RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 PDE4DIPQ5VU43 2346 aa1.79□□□□□ -2.12
CCDC88A-210ENST00000468534 A0A0D9SG42 100 aa1.78□□□□□ -2.12
CCDC88A-210ENST00000468534 WNK2Q9Y3S1 2297 aa1.77□□□□□ -2.13
CCDC88A-210ENST00000468534 S4R3F8 94 aa1.77□□□□□ -2.13
CCDC88A-210ENST00000468534 PTPRZ1P23471 2315 aaPredicted RBP1.76□□□□□ -2.13
CCDC88A-210ENST00000468534 PRLHP81277 87 aa1.76□□□□□ -2.13
CCDC88A-210ENST00000468534 DEFB109BQ30KR1 87 aa1.76□□□□□ -2.13
CCDC88A-210ENST00000468534 CLPSL2Q6UWE3 100 aa1.74□□□□□ -2.13
CCDC88A-210ENST00000468534 A8MTW9 85 aa1.72□□□□□ -2.13
CCDC88A-210ENST00000468534 J3QKU1 62 aa1.71□□□□□ -2.14
CCDC88A-210ENST00000468534 KNL1Q8NG31 2342 aa1.71□□□□□ -2.14
CCDC88A-210ENST00000468534 PCNX1Q96RV3 2341 aa1.7□□□□□ -2.14
CCDC88A-210ENST00000468534 TPRP12270 2363 aaKnown RBP1.7□□□□□ -2.14
CCDC88A-210ENST00000468534 ROS1P08922 2347 aa1.69□□□□□ -2.14
CCDC88A-210ENST00000468534 USF3Q68DE3 2245 aa1.69□□□□□ -2.14
CCDC88A-210ENST00000468534 DEFB106AQ8N104 65 aa1.69□□□□□ -2.14
CCDC88A-210ENST00000468534 TOMM7Q9P0U1 55 aa1.69□□□□□ -2.14
CCDC88A-210ENST00000468534 IGF2RP11717 2491 aa1.68□□□□□ -2.14
CCDC88A-210ENST00000468534 ZNF462Q96JM2 2506 aa1.68□□□□□ -2.14
CCDC88A-210ENST00000468534 PLCE1Q9P212 2302 aa1.67□□□□□ -2.14
CCDC88A-210ENST00000468534 TMEM167AQ8TBQ9 72 aa1.65□□□□□ -2.15
CCDC88A-210ENST00000468534 DEFB104AQ8WTQ1 72 aa1.65□□□□□ -2.15
CCDC88A-210ENST00000468534 NOP10Q9NPE3 64 aaKnown RBP1.65□□□□□ -2.15
CCDC88A-210ENST00000468534 C2CD3Q4AC94 2353 aa1.65□□□□□ -2.15
CCDC88A-210ENST00000468534 PKDREJQ9NTG1 2253 aa1.65□□□□□ -2.15
CCDC88A-210ENST00000468534 K7EIM0 57 aa1.64□□□□□ -2.15
CCDC88A-210ENST00000468534 KRTAP10-4P60372 401 aaPredicted RBP1.63□□□□□ -2.15
CCDC88A-210ENST00000468534 SPINK1P00995 79 aa1.62□□□□□ -2.15
CCDC88A-210ENST00000468534 HMCN1Q96RW7 5635 aa1.62□□□□□ -2.15
CCDC88A-210ENST00000468534 RP1L1Q8IWN7 2480 aaPredicted RBP1.61□□□□□ -2.15
CCDC88A-210ENST00000468534 FCGBPQ9Y6R7 5405 aaPredicted RBP1.6□□□□□ -2.15
CCDC88A-210ENST00000468534 MUC6Q6W4X9 2439 aa1.59□□□□□ -2.16
CCDC88A-210ENST00000468534 KRTAP21-3Q3LHN1 58 aa1.58□□□□□ -2.16
CCDC88A-210ENST00000468534 SPTBN2O15020 2390 aa1.58□□□□□ -2.16
CCDC88A-210ENST00000468534 RPL39P5Q59GN2 51 aa1.56□□□□□ -2.16
CCDC88A-210ENST00000468534 SPTBN1Q01082 2364 aaKnown RBP1.56□□□□□ -2.16
CCDC88A-210ENST00000468534 DSPP15924 2871 aaKnown RBP1.53□□□□□ -2.16
CCDC88A-210ENST00000468534 ABCA2Q9BZC7 2435 aa1.52□□□□□ -2.17
CCDC88A-210ENST00000468534 REV3LO60673 3130 aa1.52□□□□□ -2.17
CCDC88A-210ENST00000468534 MEGF8Q7Z7M0 2845 aa1.52□□□□□ -2.17
CCDC88A-210ENST00000468534 CACNA1HO95180 2353 aa1.52□□□□□ -2.17
CCDC88A-210ENST00000468534 CSPG4Q6UVK1 2322 aa1.51□□□□□ -2.17
CCDC88A-210ENST00000468534 ASH1LQ9NR48 2969 aaKnown RBP1.51□□□□□ -2.17
CCDC88A-210ENST00000468534 FBN3Q75N90 2809 aa1.5□□□□□ -2.17
CCDC88A-210ENST00000468534 DEFB108AA8MXU0 73 aa1.5□□□□□ -2.17
CCDC88A-210ENST00000468534 M0QZ58 72 aa1.48□□□□□ -2.17
CCDC88A-210ENST00000468534 TTC28Q96AY4 2481 aa1.47□□□□□ -2.17
CCDC88A-210ENST00000468534 CELSR2Q9HCU4 2923 aa1.47□□□□□ -2.17
CCDC88A-210ENST00000468534 GVINP1Q7Z2Y8 2422 aa1.47□□□□□ -2.17
CCDC88A-210ENST00000468534 F8P00451 2351 aa1.46□□□□□ -2.18
CCDC88A-210ENST00000468534 ABCA12Q86UK0 2595 aa1.45□□□□□ -2.18
CCDC88A-210ENST00000468534 H0YGG7 62 aa1.43□□□□□ -2.18
CCDC88A-210ENST00000468534 DEFB135Q30KP9 77 aa1.42□□□□□ -2.18
CCDC88A-210ENST00000468534 ZNF292O60281 2723 aa1.4□□□□□ -2.19
CCDC88A-210ENST00000468534 EP300Q09472 2414 aaPredicted RBP1.39□□□□□ -2.19
CCDC88A-210ENST00000468534 TRANK1O15050 2925 aa1.39□□□□□ -2.19
CCDC88A-210ENST00000468534 POLQO75417 2590 aa1.39□□□□□ -2.19
CCDC88A-210ENST00000468534 PKD1L2Q7Z442 2459 aa1.38□□□□□ -2.19
CCDC88A-210ENST00000468534 WNK1Q9H4A3 2382 aa1.37□□□□□ -2.19
CCDC88A-210ENST00000468534 AKAP6Q13023 2319 aa1.37□□□□□ -2.19
CCDC88A-210ENST00000468534 M0R2T5 61 aa1.37□□□□□ -2.19
CCDC88A-210ENST00000468534 KRTAP2-3P0C7H8 128 aa1.36□□□□□ -2.19
CCDC88A-210ENST00000468534 SMR3AQ99954 134 aa1.36□□□□□ -2.19
CCDC88A-210ENST00000468534 KRTAP2-4Q9BYR9 128 aa1.36□□□□□ -2.19
CCDC88A-210ENST00000468534 KRTAP2-1Q9BYU5 128 aa1.36□□□□□ -2.19
CCDC88A-210ENST00000468534 PRRC2CQ9Y520 2896 aaKnown RBP1.36□□□□□ -2.19
CCDC88A-210ENST00000468534 CEP290O15078 2479 aa1.34□□□□□ -2.19
CCDC88A-210ENST00000468534 CSMD3Q7Z407 3707 aa1.33□□□□□ -2.2
CCDC88A-210ENST00000468534 TENM1Q9UKZ4 2725 aa1.33□□□□□ -2.2
CCDC88A-210ENST00000468534 HECTD1Q9ULT8 2610 aa1.32□□□□□ -2.2
CCDC88A-210ENST00000468534 TNP1P09430 55 aa1.32□□□□□ -2.2
CCDC88A-210ENST00000468534 TENM4Q6N022 2769 aa1.31□□□□□ -2.2
CCDC88A-210ENST00000468534 APELAP0DMC3 54 aa1.31□□□□□ -2.2
CCDC88A-210ENST00000468534 SPINK6Q6UWN8 80 aa1.31□□□□□ -2.2
CCDC88A-210ENST00000468534 A0A0C4DFX4 3053 aa1.31□□□□□ -2.2
CCDC88A-210ENST00000468534 H3BUX3 64 aa1.3□□□□□ -2.2
CCDC88A-210ENST00000468534 AKAP13Q12802 2813 aa1.29□□□□□ -2.2
CCDC88A-210ENST00000468534 C9orf92A6NGG3 77 aa1.29□□□□□ -2.2
CCDC88A-210ENST00000468534 DEFB1P60022 68 aa1.28□□□□□ -2.2
CCDC88A-210ENST00000468534 NCOR1O75376 2440 aa1.27□□□□□ -2.21
CCDC88A-210ENST00000468534 SPTA1P02549 2419 aa1.27□□□□□ -2.21
CCDC88A-210ENST00000468534 CELSR1Q9NYQ6 3014 aa1.26□□□□□ -2.21
CCDC88A-210ENST00000468534 DMBT1Q9UGM3 2413 aaPredicted RBP1.26□□□□□ -2.21
CCDC88A-210ENST00000468534 CHD9Q3L8U1 2897 aa1.26□□□□□ -2.21
CCDC88A-210ENST00000468534 ATRQ13535 2644 aa1.25□□□□□ -2.21
CCDC88A-210ENST00000468534 SPART-AS1P0CW21 52 aa1.25□□□□□ -2.21
CCDC88A-210ENST00000468534 CHD7Q9P2D1 2997 aa1.24□□□□□ -2.21
CCDC88A-210ENST00000468534 DNAH11Q96DT5 4516 aa1.24□□□□□ -2.21
CCDC88A-210ENST00000468534 NAV2Q8IVL1 2488 aa1.24□□□□□ -2.21
CCDC88A-210ENST00000468534 COL6A5A8TX70 2615 aa1.24□□□□□ -2.21
CCDC88A-210ENST00000468534 VPS13DQ5THJ4 4388 aa1.24□□□□□ -2.21
CCDC88A-210ENST00000468534 MYCBP2O75592 4640 aa1.24□□□□□ -2.21
CCDC88A-210ENST00000468534 SRRM2Q9UQ35 2752 aaKnown RBP1.24□□□□□ -2.21
CCDC88A-210ENST00000468534 RHPN1-AS1Q9BWJ2 59 aa1.23□□□□□ -2.21
CCDC88A-210ENST00000468534 ACACAQ13085 2346 aa1.23□□□□□ -2.21
CCDC88A-210ENST00000468534 VWFP04275 2813 aa1.22□□□□□ -2.21
CCDC88A-210ENST00000468534 TENM2Q9NT68 2774 aa1.22□□□□□ -2.21
CCDC88A-210ENST00000468534 PIEZO1Q92508 2521 aa1.22□□□□□ -2.21
CCDC88A-210ENST00000468534 CHD6Q8TD26 2715 aa1.21□□□□□ -2.22
CCDC88A-210ENST00000468534 OTOGQ6ZRI0 2925 aa1.21□□□□□ -2.22
Retrieved 100 of 20,778 RNA–protein pairs in 73.6 ms