RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 M0R143 59 aa6.86□□□□□ -1.31
SQSTM1-206ENST00000466342 C9orf153Q5TBE3 101 aa6.85□□□□□ -1.31
SQSTM1-206ENST00000466342 Q6ZQY7 126 aa6.85□□□□□ -1.31
SQSTM1-206ENST00000466342 SSBP3-AS1Q7Z2R9 100 aa6.85□□□□□ -1.31
SQSTM1-206ENST00000466342 Q8NBF4 154 aa6.85□□□□□ -1.31
SQSTM1-206ENST00000466342 LAMTOR3Q9UHA4 124 aa6.85□□□□□ -1.31
SQSTM1-206ENST00000466342 TRIAP1O43715 76 aa6.84□□□□□ -1.31
SQSTM1-206ENST00000466342 SPAG11AQ6PDA7 123 aa6.84□□□□□ -1.31
SQSTM1-206ENST00000466342 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP6.84□□□□□ -1.31
SQSTM1-206ENST00000466342 CDIP1Q9H305 208 aa6.84□□□□□ -1.31
SQSTM1-206ENST00000466342 PCP4L1A6NKN8 68 aa6.83□□□□□ -1.32
SQSTM1-206ENST00000466342 SMIM29Q86T20 159 aa6.83□□□□□ -1.32
SQSTM1-206ENST00000466342 Q8N377 158 aa6.83□□□□□ -1.32
SQSTM1-206ENST00000466342 FAM218AQ96MZ4 157 aa6.83□□□□□ -1.32
SQSTM1-206ENST00000466342 SNCGO76070 127 aa6.82□□□□□ -1.32
SQSTM1-206ENST00000466342 PSMB2P49721 201 aa6.82□□□□□ -1.32
SQSTM1-206ENST00000466342 A0A1B0GX51 115 aa6.81□□□□□ -1.32
SQSTM1-206ENST00000466342 KRTAP9-7A8MTY7 169 aa6.81□□□□□ -1.32
SQSTM1-206ENST00000466342 C4orf48Q5BLP8 95 aa6.81□□□□□ -1.32
SQSTM1-206ENST00000466342 COX6CP09669 75 aa6.8□□□□□ -1.32
SQSTM1-206ENST00000466342 PPDPFLQ8WWR9 84 aa6.8□□□□□ -1.32
SQSTM1-206ENST00000466342 SPINK1P00995 79 aa6.79□□□□□ -1.32
SQSTM1-206ENST00000466342 TPRXLQ17RH7 258 aa6.79□□□□□ -1.32
SQSTM1-206ENST00000466342 OCIAD2Q56VL3 154 aa6.79□□□□□ -1.32
SQSTM1-206ENST00000466342 CLEC2BQ92478 149 aa6.79□□□□□ -1.32
SQSTM1-206ENST00000466342 RETNLBQ9BQ08 111 aa6.78□□□□□ -1.32
SQSTM1-206ENST00000466342 F8WEM9 126 aa6.77□□□□□ -1.33
SQSTM1-206ENST00000466342 RPS29P62273 56 aaKnown RBP6.76□□□□□ -1.33
SQSTM1-206ENST00000466342 IGLV7-46A0A075B6I9 117 aa6.75□□□□□ -1.33
SQSTM1-206ENST00000466342 GHRHP01286 108 aa6.75□□□□□ -1.33
SQSTM1-206ENST00000466342 BATFQ16520 125 aa6.75□□□□□ -1.33
SQSTM1-206ENST00000466342 DNAL4O96015 105 aa6.74□□□□□ -1.33
SQSTM1-206ENST00000466342 SCGB1C2P0DMR2 95 aa6.74□□□□□ -1.33
SQSTM1-206ENST00000466342 SNHG12Q9BXW3 62 aa6.74□□□□□ -1.33
SQSTM1-206ENST00000466342 IGLV8-61A0A075B6I0 122 aa6.73□□□□□ -1.33
SQSTM1-206ENST00000466342 CD164Q04900 197 aa6.73□□□□□ -1.33
SQSTM1-206ENST00000466342 LST1O00453 97 aa6.72□□□□□ -1.33
SQSTM1-206ENST00000466342 HRCT1Q6UXD1 115 aa6.72□□□□□ -1.33
SQSTM1-206ENST00000466342 NAA38Q9BRA0 125 aaKnown RBP6.72□□□□□ -1.33
SQSTM1-206ENST00000466342 ORMDL1Q9P0S3 153 aa6.72□□□□□ -1.33
SQSTM1-206ENST00000466342 A0A0G2JQZ4 141 aa6.71□□□□□ -1.34
SQSTM1-206ENST00000466342 TRACP01848 142 aa6.71□□□□□ -1.34
SQSTM1-206ENST00000466342 NDUFV3P56181 108 aaKnown RBP6.71□□□□□ -1.34
SQSTM1-206ENST00000466342 Q6JHZ5 121 aa6.71□□□□□ -1.34
SQSTM1-206ENST00000466342 FP248Q71RG6 208 aaPredicted RBP6.71□□□□□ -1.34
SQSTM1-206ENST00000466342 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.7□□□□□ -1.34
SQSTM1-206ENST00000466342 H3BQ85 93 aa6.7□□□□□ -1.34
SQSTM1-206ENST00000466342 FABP2P12104 132 aa6.7□□□□□ -1.34
SQSTM1-206ENST00000466342 LIMD2Q9BT23 127 aa6.7□□□□□ -1.34
SQSTM1-206ENST00000466342 IGFL1Q6UW32 110 aa6.69□□□□□ -1.34
SQSTM1-206ENST00000466342 H3BUT2 72 aa6.68□□□□□ -1.34
SQSTM1-206ENST00000466342 TMEM256-PLSCR3K7ERE1 68 aa6.68□□□□□ -1.34
SQSTM1-206ENST00000466342 LYRM7Q5U5X0 104 aa6.68□□□□□ -1.34
SQSTM1-206ENST00000466342 TCL1BO95988 128 aa6.67□□□□□ -1.34
SQSTM1-206ENST00000466342 ATXN8Q156A1 80 aa6.67□□□□□ -1.34
SQSTM1-206ENST00000466342 KRTAP4-1Q9BYQ7 146 aa6.67□□□□□ -1.34
SQSTM1-206ENST00000466342 C9orf118A6NHY6 69 aa6.66□□□□□ -1.34
SQSTM1-206ENST00000466342 H3BMG7 143 aa6.66□□□□□ -1.34
SQSTM1-206ENST00000466342 TAX1BP3O14907 124 aa6.66□□□□□ -1.34
SQSTM1-206ENST00000466342 ASB16-AS1Q495Z4 193 aa6.66□□□□□ -1.34
SQSTM1-206ENST00000466342 Q5XG85 94 aa6.66□□□□□ -1.34
SQSTM1-206ENST00000466342 UBE2V1Q13404 147 aa6.65□□□□□ -1.34
SQSTM1-206ENST00000466342 TRBV20-1A0A075B6N2 111 aa6.64□□□□□ -1.35
SQSTM1-206ENST00000466342 TRBV7-7A0A0K0K1E9 115 aa6.63□□□□□ -1.35
SQSTM1-206ENST00000466342 KRTAP13-3Q3SY46 172 aa6.63□□□□□ -1.35
SQSTM1-206ENST00000466342 LCE2CQ5TA81 110 aa6.63□□□□□ -1.35
SQSTM1-206ENST00000466342 A0A1W2PPM0 123 aa6.62□□□□□ -1.35
SQSTM1-206ENST00000466342 BAALC-AS2P0C853 105 aa6.62□□□□□ -1.35
SQSTM1-206ENST00000466342 Q6Q795 121 aa6.62□□□□□ -1.35
SQSTM1-206ENST00000466342 COL5A1-AS1Q5SY13 56 aa6.61□□□□□ -1.35
SQSTM1-206ENST00000466342 A0A1B0GV72 72 aa6.6□□□□□ -1.35
SQSTM1-206ENST00000466342 TEN1Q86WV5 123 aa6.6□□□□□ -1.35
SQSTM1-206ENST00000466342 ANKRD29Q8N6D5 301 aa6.6□□□□□ -1.35
SQSTM1-206ENST00000466342 SEC61BP60468 96 aaKnown RBP6.59□□□□□ -1.35
SQSTM1-206ENST00000466342 A0A1W2PNM2 257 aa6.58□□□□□ -1.36
SQSTM1-206ENST00000466342 C9JAW5 83 aa6.58□□□□□ -1.36
SQSTM1-206ENST00000466342 LORP23490 312 aaPredicted RBP6.58□□□□□ -1.36
SQSTM1-206ENST00000466342 MT1HP80294 61 aa6.58□□□□□ -1.36
SQSTM1-206ENST00000466342 C1orf195Q5TG92 126 aa6.58□□□□□ -1.36
SQSTM1-206ENST00000466342 RBM3P98179 157 aaKnown RBP6.57□□□□□ -1.36
SQSTM1-206ENST00000466342 TRBV7-4A0A0J9YYF1 115 aa6.56□□□□□ -1.36
SQSTM1-206ENST00000466342 SS18L2Q9UHA2 77 aa6.56□□□□□ -1.36
SQSTM1-206ENST00000466342 A0A087WSZ3 146 aa6.55□□□□□ -1.36
SQSTM1-206ENST00000466342 KRTAP10-6P60371 365 aaPredicted RBP6.55□□□□□ -1.36
SQSTM1-206ENST00000466342 SPCS1Q9Y6A9 102 aa6.55□□□□□ -1.36
SQSTM1-206ENST00000466342 JMJD7-PLA2G4BH0Y9G9 81 aa6.54□□□□□ -1.36
SQSTM1-206ENST00000466342 CCKP06307 115 aa6.54□□□□□ -1.36
SQSTM1-206ENST00000466342 DSCR8Q96T75 97 aa6.54□□□□□ -1.36
SQSTM1-206ENST00000466342 H3BT86 120 aa6.53□□□□□ -1.36
SQSTM1-206ENST00000466342 KRTAP19-2Q3LHN2 52 aa6.53□□□□□ -1.36
SQSTM1-206ENST00000466342 XP32Q5T750 250 aa6.51□□□□□ -1.37
SQSTM1-206ENST00000466342 MTURNQ8N3F0 131 aa6.51□□□□□ -1.37
SQSTM1-206ENST00000466342 A0A1B0GV90 55 aa6.5□□□□□ -1.37
SQSTM1-206ENST00000466342 OBSCN-AS1Q96MR7 158 aa6.5□□□□□ -1.37
SQSTM1-206ENST00000466342 VPS25Q9BRG1 176 aa6.5□□□□□ -1.37
SQSTM1-206ENST00000466342 LOC110117498A0A087WWA1 95 aa6.49□□□□□ -1.37
SQSTM1-206ENST00000466342 K7EP34 96 aa6.49□□□□□ -1.37
SQSTM1-206ENST00000466342 C9orf92A6NGG3 77 aa6.48□□□□□ -1.37
SQSTM1-206ENST00000466342 PDE6GP18545 87 aa6.48□□□□□ -1.37
SQSTM1-206ENST00000466342 Q6ZQT0 140 aa6.48□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 9.4 ms