RNA–Protein interactions for RNA: ENST00000463727.1

PTPRE-205, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

TSL 1 (best)

Gene PTPRE, Length 3,944 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-205ENST00000463727 CHTF8P0CG12 524 aa6.68□□□□□ -1.34
PTPRE-205ENST00000463727 SPRR1AP35321 89 aa6.67□□□□□ -1.34
PTPRE-205ENST00000463727 Q5XG85 94 aa6.67□□□□□ -1.34
PTPRE-205ENST00000463727 EPM2AB3EWF7 344 aa6.67□□□□□ -1.34
PTPRE-205ENST00000463727 H0Y9P7 68 aa6.66□□□□□ -1.34
PTPRE-205ENST00000463727 RPL37AP61513 92 aaKnown RBP6.66□□□□□ -1.34
PTPRE-205ENST00000463727 SPRR4Q96PI1 79 aa6.66□□□□□ -1.34
PTPRE-205ENST00000463727 K7EIL1 84 aa6.66□□□□□ -1.34
PTPRE-205ENST00000463727 TRRAPQ9Y4A5 3859 aa6.65□□□□□ -1.34
PTPRE-205ENST00000463727 LINC00336Q6ZUF6 198 aa6.65□□□□□ -1.35
PTPRE-205ENST00000463727 DSCR10P59022 87 aa6.64□□□□□ -1.35
PTPRE-205ENST00000463727 hDV103S1A0JD37 113 aa6.63□□□□□ -1.35
PTPRE-205ENST00000463727 PSPHP1O15172 72 aa6.62□□□□□ -1.35
PTPRE-205ENST00000463727 KRTAP4-16G5E9R7 235 aaPredicted RBP6.61□□□□□ -1.35
PTPRE-205ENST00000463727 ZNF706Q9Y5V0 76 aaPredicted RBP6.61□□□□□ -1.35
PTPRE-205ENST00000463727 CNBPP62633 177 aaKnown RBP6.6□□□□□ -1.35
PTPRE-205ENST00000463727 C1orf64Q8NEQ6 169 aa6.6□□□□□ -1.35
PTPRE-205ENST00000463727 NUPR2A6NF83 97 aa6.6□□□□□ -1.35
PTPRE-205ENST00000463727 TNP2Q05952 138 aa6.6□□□□□ -1.35
PTPRE-205ENST00000463727 NBEAL1Q6ZS30 2694 aa6.59□□□□□ -1.35
PTPRE-205ENST00000463727 FP248Q71RG6 208 aaPredicted RBP6.59□□□□□ -1.35
PTPRE-205ENST00000463727 A8MWP4 228 aa6.58□□□□□ -1.36
PTPRE-205ENST00000463727 SPINK6Q6UWN8 80 aa6.58□□□□□ -1.36
PTPRE-205ENST00000463727 MDFIQ99750 246 aa6.58□□□□□ -1.36
PTPRE-205ENST00000463727 PRR15Q8IV56 129 aa6.58□□□□□ -1.36
PTPRE-205ENST00000463727 IGHV6-1A0A0B4J1U7 121 aa6.57□□□□□ -1.36
PTPRE-205ENST00000463727 NBDYA0A0U1RRE5 68 aa6.57□□□□□ -1.36
PTPRE-205ENST00000463727 C9orf163Q8N9P6 203 aa6.57□□□□□ -1.36
PTPRE-205ENST00000463727 H3BPC8 53 aa6.57□□□□□ -1.36
PTPRE-205ENST00000463727 PCOTHQ58A44 107 aa6.57□□□□□ -1.36
PTPRE-205ENST00000463727 TRAV22A0A0B4J277 110 aa6.55□□□□□ -1.36
PTPRE-205ENST00000463727 FBN1P35555 2871 aaKnown RBP6.55□□□□□ -1.36
PTPRE-205ENST00000463727 CHKB-CPT1BH3BT56 60 aa6.55□□□□□ -1.36
PTPRE-205ENST00000463727 FAM229BQ4G0N7 80 aa6.54□□□□□ -1.36
PTPRE-205ENST00000463727 TENM3Q9P273 2699 aa6.53□□□□□ -1.36
PTPRE-205ENST00000463727 KRTAP7-1Q8IUC3 87 aa6.53□□□□□ -1.36
PTPRE-205ENST00000463727 KRTAP1-5Q9BYS1 174 aa6.53□□□□□ -1.36
PTPRE-205ENST00000463727 PKD1L1Q8TDX9 2849 aa6.52□□□□□ -1.37
PTPRE-205ENST00000463727 APLNQ9ULZ1 77 aa6.52□□□□□ -1.37
PTPRE-205ENST00000463727 MOBPQ13875 183 aa6.52□□□□□ -1.37
PTPRE-205ENST00000463727 PRR15LQ9BU68 103 aa6.52□□□□□ -1.37
PTPRE-205ENST00000463727 SPTSSBQ8NFR3 76 aa6.52□□□□□ -1.37
PTPRE-205ENST00000463727 TP53AIP1Q9HCN2 124 aa6.52□□□□□ -1.37
PTPRE-205ENST00000463727 IGLV8-61A0A075B6I0 122 aa6.5□□□□□ -1.37
PTPRE-205ENST00000463727 A6NED7 52 aa6.5□□□□□ -1.37
PTPRE-205ENST00000463727 CIRBP-AS1Q8TBR5 109 aa6.49□□□□□ -1.37
PTPRE-205ENST00000463727 LIMD2Q9BT23 127 aa6.49□□□□□ -1.37
PTPRE-205ENST00000463727 IGLV5-52A0A0A0MRZ9 124 aa6.49□□□□□ -1.37
PTPRE-205ENST00000463727 A8MUN3 132 aa6.48□□□□□ -1.37
PTPRE-205ENST00000463727 PMAIP1Q13794 54 aa6.47□□□□□ -1.37
PTPRE-205ENST00000463727 CYP4F30PQ9H0H9 118 aa6.47□□□□□ -1.37
PTPRE-205ENST00000463727 STAB2Q8WWQ8 2551 aa6.47□□□□□ -1.37
PTPRE-205ENST00000463727 RTL8CO15255 209 aa6.46□□□□□ -1.38
PTPRE-205ENST00000463727 SPRR1BP22528 89 aa6.46□□□□□ -1.38
PTPRE-205ENST00000463727 LY6G6CO95867 125 aa6.45□□□□□ -1.38
PTPRE-205ENST00000463727 SPANXA2-OT1Q8N9U9 137 aa6.45□□□□□ -1.38
PTPRE-205ENST00000463727 C8orf17Q9NRJ1 99 aa6.44□□□□□ -1.38
PTPRE-205ENST00000463727 LINC00472Q9H8W2 130 aa6.44□□□□□ -1.38
PTPRE-205ENST00000463727 Q1T7F1 81 aa6.44□□□□□ -1.38
PTPRE-205ENST00000463727 ANK2Q01484 3957 aa6.44□□□□□ -1.38
PTPRE-205ENST00000463727 CMYA5Q8N3K9 4069 aa6.44□□□□□ -1.38
PTPRE-205ENST00000463727 C1orf134Q5TEV5 83 aa6.44□□□□□ -1.38
PTPRE-205ENST00000463727 ZCCHC13Q8WW36 166 aaKnown RBP6.43□□□□□ -1.38
PTPRE-205ENST00000463727 A0A087WTM6 91 aa6.43□□□□□ -1.38
PTPRE-205ENST00000463727 LCE6AA0A183 80 aa6.42□□□□□ -1.38
PTPRE-205ENST00000463727 COA5Q86WW8 74 aa6.42□□□□□ -1.38
PTPRE-205ENST00000463727 ANAPC11Q9NYG5 84 aa6.42□□□□□ -1.38
PTPRE-205ENST00000463727 C4orf48Q5BLP8 95 aa6.42□□□□□ -1.38
PTPRE-205ENST00000463727 MRPL34Q9BQ48 92 aaKnown RBP6.42□□□□□ -1.38
PTPRE-205ENST00000463727 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.42□□□□□ -1.38
PTPRE-205ENST00000463727 A0A1B0GVX0 72 aa6.41□□□□□ -1.38
PTPRE-205ENST00000463727 PSORS1C2Q9UIG4 136 aa6.41□□□□□ -1.38
PTPRE-205ENST00000463727 ZNF861PO60384 105 aa6.41□□□□□ -1.38
PTPRE-205ENST00000463727 SPAG11AQ6PDA7 123 aa6.4□□□□□ -1.38
PTPRE-205ENST00000463727 MMP24-AS1A0A0U1RRL7 71 aa6.4□□□□□ -1.39
PTPRE-205ENST00000463727 KRTAP11-1Q8IUC1 163 aa6.4□□□□□ -1.39
PTPRE-205ENST00000463727 KRTAP29-1A8MX34 341 aaPredicted RBP6.39□□□□□ -1.39
PTPRE-205ENST00000463727 SPACA4Q8TDM5 124 aa6.38□□□□□ -1.39
PTPRE-205ENST00000463727 PANO1I0J062 215 aa6.37□□□□□ -1.39
PTPRE-205ENST00000463727 RETNLBQ9BQ08 111 aa6.36□□□□□ -1.39
PTPRE-205ENST00000463727 LOC101927531A0A1B0GV80 90 aa6.35□□□□□ -1.39
PTPRE-205ENST00000463727 DNAH3Q8TD57 4116 aa6.34□□□□□ -1.39
PTPRE-205ENST00000463727 IGLV7-46A0A075B6I9 117 aa6.34□□□□□ -1.39
PTPRE-205ENST00000463727 Q8N9P0 234 aaPredicted RBP6.32□□□□□ -1.4
PTPRE-205ENST00000463727 ACYP2P14621 99 aa6.31□□□□□ -1.4
PTPRE-205ENST00000463727 IGLV7-43P04211 117 aa6.31□□□□□ -1.4
PTPRE-205ENST00000463727 LINC00313P59037 77 aa6.31□□□□□ -1.4
PTPRE-205ENST00000463727 SSBP3-AS1Q7Z2R9 100 aa6.3□□□□□ -1.4
PTPRE-205ENST00000463727 WWC2-AS2Q96NR7 200 aa6.3□□□□□ -1.4
PTPRE-205ENST00000463727 C8orf87E5RJ46 101 aa6.3□□□□□ -1.4
PTPRE-205ENST00000463727 CD164Q04900 197 aa6.29□□□□□ -1.4
PTPRE-205ENST00000463727 PLAC8Q9NZF1 115 aa6.28□□□□□ -1.4
PTPRE-205ENST00000463727 Q5VV11 94 aa6.27□□□□□ -1.41
PTPRE-205ENST00000463727 FAM229AH3BQW9 127 aa6.27□□□□□ -1.41
PTPRE-205ENST00000463727 LINC00483Q53H64 154 aa6.27□□□□□ -1.41
PTPRE-205ENST00000463727 Q6ZRN7 208 aaPredicted RBP6.27□□□□□ -1.41
PTPRE-205ENST00000463727 KRTAP13-1Q8IUC0 172 aa6.26□□□□□ -1.41
PTPRE-205ENST00000463727 IGKV2D-30A0A075B6S6 120 aa6.26□□□□□ -1.41
PTPRE-205ENST00000463727 IGKV2-30P06310 120 aa6.26□□□□□ -1.41
PTPRE-205ENST00000463727 KRTAP21-3Q3LHN1 58 aa6.26□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 57.9 ms