RNA–Protein interactions for RNA: ENST00000458268.5

USP39-209, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 751 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-209ENST00000458268 TMEM238LA0A1B0GVL6 79 aa10.45□□□□□ -0.74
USP39-209ENST00000458268 A6NJY4 79 aa10.45□□□□□ -0.74
USP39-209ENST00000458268 FXYD2P54710 66 aa10.44□□□□□ -0.74
USP39-209ENST00000458268 CD164Q04900 197 aa10.42□□□□□ -0.74
USP39-209ENST00000458268 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP10.42□□□□□ -0.74
USP39-209ENST00000458268 PRO1854Q9UHT4 67 aa10.41□□□□□ -0.74
USP39-209ENST00000458268 SNHG12Q9BXW3 62 aa10.4□□□□□ -0.74
USP39-209ENST00000458268 SNCGO76070 127 aa10.39□□□□□ -0.75
USP39-209ENST00000458268 HSD52Q0P140 79 aa10.39□□□□□ -0.75
USP39-209ENST00000458268 C9orf92A6NGG3 77 aa10.37□□□□□ -0.75
USP39-209ENST00000458268 H0YGX0 51 aa10.37□□□□□ -0.75
USP39-209ENST00000458268 K7ERJ3 54 aa10.37□□□□□ -0.75
USP39-209ENST00000458268 FAM218AQ96MZ4 157 aa10.37□□□□□ -0.75
USP39-209ENST00000458268 UQCR10Q9UDW1 63 aa10.36□□□□□ -0.75
USP39-209ENST00000458268 H3BUT2 72 aa10.35□□□□□ -0.75
USP39-209ENST00000458268 OCIAD2Q56VL3 154 aa10.35□□□□□ -0.75
USP39-209ENST00000458268 PSMB2P49721 201 aa10.34□□□□□ -0.75
USP39-209ENST00000458268 Q6JHZ5 121 aa10.34□□□□□ -0.75
USP39-209ENST00000458268 IGFL1Q6UW32 110 aa10.34□□□□□ -0.75
USP39-209ENST00000458268 A0A0U1RQV1 116 aa10.33□□□□□ -0.76
USP39-209ENST00000458268 TRIAP1O43715 76 aa10.33□□□□□ -0.76
USP39-209ENST00000458268 CLEC2BQ92478 149 aa10.33□□□□□ -0.76
USP39-209ENST00000458268 TCL1BO95988 128 aa10.32□□□□□ -0.76
USP39-209ENST00000458268 PPDPFLQ8WWR9 84 aa10.32□□□□□ -0.76
USP39-209ENST00000458268 XP32Q5T750 250 aa10.31□□□□□ -0.76
USP39-209ENST00000458268 C1orf195Q5TG92 126 aa10.31□□□□□ -0.76
USP39-209ENST00000458268 FABP2P12104 132 aa10.3□□□□□ -0.76
USP39-209ENST00000458268 SEC61BP60468 96 aaKnown RBP10.29□□□□□ -0.76
USP39-209ENST00000458268 MUC2Q02817 5179 aa10.28□□□□□ -0.76
USP39-209ENST00000458268 MUC17Q685J3 4493 aa10.28□□□□□ -0.76
USP39-209ENST00000458268 IGLV8-61A0A075B6I0 122 aa10.28□□□□□ -0.76
USP39-209ENST00000458268 ASB16-AS1Q495Z4 193 aa10.27□□□□□ -0.77
USP39-209ENST00000458268 Q5XG85 94 aa10.27□□□□□ -0.77
USP39-209ENST00000458268 TRBV7-7A0A0K0K1E9 115 aa10.26□□□□□ -0.77
USP39-209ENST00000458268 NDUFV3P56181 108 aaKnown RBP10.26□□□□□ -0.77
USP39-209ENST00000458268 A0A1B0GV72 72 aa10.25□□□□□ -0.77
USP39-209ENST00000458268 DNAL4O96015 105 aa10.25□□□□□ -0.77
USP39-209ENST00000458268 A0A1B0GX51 115 aa10.23□□□□□ -0.77
USP39-209ENST00000458268 COX6CP09669 75 aa10.23□□□□□ -0.77
USP39-209ENST00000458268 H3BMG7 143 aa10.21□□□□□ -0.77
USP39-209ENST00000458268 GHRHP01286 108 aa10.21□□□□□ -0.77
USP39-209ENST00000458268 SCGB1C2P0DMR2 95 aa10.19□□□□□ -0.78
USP39-209ENST00000458268 ORMDL1Q9P0S3 153 aa10.19□□□□□ -0.78
USP39-209ENST00000458268 KRTAP4-1Q9BYQ7 146 aa10.17□□□□□ -0.78
USP39-209ENST00000458268 PCOTHQ58A44 107 aa10.16□□□□□ -0.78
USP39-209ENST00000458268 LST1O00453 97 aa10.15□□□□□ -0.78
USP39-209ENST00000458268 TEN1Q86WV5 123 aa10.14□□□□□ -0.79
USP39-209ENST00000458268 A0A087WSZ3 146 aa10.13□□□□□ -0.79
USP39-209ENST00000458268 SMIM6P0DI80 62 aa10.13□□□□□ -0.79
USP39-209ENST00000458268 SS18L2Q9UHA2 77 aa10.13□□□□□ -0.79
USP39-209ENST00000458268 M0R143 59 aa10.11□□□□□ -0.79
USP39-209ENST00000458268 NAA38Q9BRA0 125 aaKnown RBP10.11□□□□□ -0.79
USP39-209ENST00000458268 ANKRD29Q8N6D5 301 aa10.1□□□□□ -0.79
USP39-209ENST00000458268 TMEM256-PLSCR3K7ERE1 68 aa10.09□□□□□ -0.79
USP39-209ENST00000458268 Q6Q795 121 aa10.09□□□□□ -0.79
USP39-209ENST00000458268 H3BQ85 93 aa10.07□□□□□ -0.8
USP39-209ENST00000458268 OBSCN-AS1Q96MR7 158 aa10.07□□□□□ -0.8
USP39-209ENST00000458268 A0A1W2PNM2 257 aa10.06□□□□□ -0.8
USP39-209ENST00000458268 TRACP01848 142 aa10.06□□□□□ -0.8
USP39-209ENST00000458268 BATFQ16520 125 aa10.06□□□□□ -0.8
USP39-209ENST00000458268 RPL37P61927 97 aaKnown RBP10.05□□□□□ -0.8
USP39-209ENST00000458268 VPS25Q9BRG1 176 aa10.05□□□□□ -0.8
USP39-209ENST00000458268 FAT4Q6V0I7 4981 aa10.04□□□□□ -0.8
USP39-209ENST00000458268 TSTD3H0UI37 97 aa10.04□□□□□ -0.8
USP39-209ENST00000458268 SIGMAR1Q99720 223 aa10.04□□□□□ -0.8
USP39-209ENST00000458268 CCKP06307 115 aa10.01□□□□□ -0.81
USP39-209ENST00000458268 UBE2V1Q13404 147 aa10□□□□□ -0.81
USP39-209ENST00000458268 Q96NJ1 140 aa10□□□□□ -0.81
USP39-209ENST00000458268 BAALC-AS2P0C853 105 aa9.99□□□□□ -0.81
USP39-209ENST00000458268 LCE2AQ5TA79 106 aaPredicted RBP9.99□□□□□ -0.81
USP39-209ENST00000458268 LOC105371267A0A1B0GV96 52 aa9.98□□□□□ -0.81
USP39-209ENST00000458268 TRBV7-4A0A0J9YYF1 115 aa9.97□□□□□ -0.81
USP39-209ENST00000458268 ATXN8Q156A1 80 aa9.97□□□□□ -0.81
USP39-209ENST00000458268 RBM3P98179 157 aaKnown RBP9.96□□□□□ -0.82
USP39-209ENST00000458268 IGKV4-1P06312 121 aa9.95□□□□□ -0.82
USP39-209ENST00000458268 DSCR10P59022 87 aa9.95□□□□□ -0.82
USP39-209ENST00000458268 DEFB116Q30KQ4 102 aa9.95□□□□□ -0.82
USP39-209ENST00000458268 DSCR8Q96T75 97 aa9.95□□□□□ -0.82
USP39-209ENST00000458268 ATP11AUNQ6ZP68 121 aa9.92□□□□□ -0.82
USP39-209ENST00000458268 LYRM7Q5U5X0 104 aa9.9□□□□□ -0.82
USP39-209ENST00000458268 C9JAW5 83 aa9.89□□□□□ -0.83
USP39-209ENST00000458268 Q75L30 129 aa9.89□□□□□ -0.83
USP39-209ENST00000458268 IGHV6-1A0A0B4J1U7 121 aa9.84□□□□□ -0.83
USP39-209ENST00000458268 LINC00313P59037 77 aa9.84□□□□□ -0.83
USP39-209ENST00000458268 COX6B2Q6YFQ2 88 aa9.84□□□□□ -0.83
USP39-209ENST00000458268 LINC00472Q9H8W2 130 aa9.83□□□□□ -0.84
USP39-209ENST00000458268 TRBV20-1A0A075B6N2 111 aa9.81□□□□□ -0.84
USP39-209ENST00000458268 JMJD7-PLA2G4BH0Y9G9 81 aa9.81□□□□□ -0.84
USP39-209ENST00000458268 LCE2CQ5TA81 110 aa9.81□□□□□ -0.84
USP39-209ENST00000458268 C14orf132Q9NPU4 83 aa9.81□□□□□ -0.84
USP39-209ENST00000458268 KRTAP19-2Q3LHN2 52 aa9.8□□□□□ -0.84
USP39-209ENST00000458268 C20orf166-AS1Q96NR2 134 aa9.8□□□□□ -0.84
USP39-209ENST00000458268 C9orf118A6NHY6 69 aa9.79□□□□□ -0.84
USP39-209ENST00000458268 A8MUU9 505 aa9.79□□□□□ -0.84
USP39-209ENST00000458268 MTURNQ8N3F0 131 aa9.79□□□□□ -0.84
USP39-209ENST00000458268 TAX1BP3O14907 124 aa9.78□□□□□ -0.84
USP39-209ENST00000458268 NOTCH2NLQ7Z3S9 236 aa9.78□□□□□ -0.84
USP39-209ENST00000458268 Q6ZQT0 140 aa9.77□□□□□ -0.85
USP39-209ENST00000458268 A0A1W2PPM0 123 aa9.76□□□□□ -0.85
USP39-209ENST00000458268 LOC110117498A0A087WWA1 95 aa9.74□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 143.2 ms