RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 TP53AIP1Q9HCN2 124 aa4.7□□□□□ -1.66
SYNE1-213ENST00000448038 LINC00304Q8N9R0 145 aa4.69□□□□□ -1.66
SYNE1-213ENST00000448038 A8MWP4 228 aa4.68□□□□□ -1.66
SYNE1-213ENST00000448038 K7EQZ3 153 aa4.67□□□□□ -1.66
SYNE1-213ENST00000448038 SPAG11AQ6PDA7 123 aa4.67□□□□□ -1.66
SYNE1-213ENST00000448038 KRTAP26-1Q6PEX3 210 aa4.67□□□□□ -1.66
SYNE1-213ENST00000448038 Q96NJ1 140 aa4.67□□□□□ -1.66
SYNE1-213ENST00000448038 SERP1Q9Y6X1 66 aa4.66□□□□□ -1.66
SYNE1-213ENST00000448038 RELNP78509 3460 aa4.65□□□□□ -1.66
SYNE1-213ENST00000448038 C8orf87E5RJ46 101 aa4.65□□□□□ -1.66
SYNE1-213ENST00000448038 Q8NDZ9 215 aa4.65□□□□□ -1.66
SYNE1-213ENST00000448038 SPINK1P00995 79 aa4.65□□□□□ -1.67
SYNE1-213ENST00000448038 DCHS1Q96JQ0 3298 aa4.64□□□□□ -1.67
SYNE1-213ENST00000448038 A0A1W2PNM2 257 aa4.64□□□□□ -1.67
SYNE1-213ENST00000448038 PLAC8Q9NZF1 115 aa4.64□□□□□ -1.67
SYNE1-213ENST00000448038 TRAV22A0A0B4J277 110 aa4.64□□□□□ -1.67
SYNE1-213ENST00000448038 DMDP11532 3685 aa4.64□□□□□ -1.67
SYNE1-213ENST00000448038 NIPBLQ6KC79 2804 aaeCLIP4.64□□□□□ -1.67
SYNE1-213ENST00000448038 MRPL34Q9BQ48 92 aaKnown RBP4.63□□□□□ -1.67
SYNE1-213ENST00000448038 TENM4Q6N022 2769 aa4.63□□□□□ -1.67
SYNE1-213ENST00000448038 LCE6AA0A183 80 aa4.63□□□□□ -1.67
SYNE1-213ENST00000448038 IGLV5-48A0A075B6I7 105 aa4.63□□□□□ -1.67
SYNE1-213ENST00000448038 PRR15Q8IV56 129 aa4.63□□□□□ -1.67
SYNE1-213ENST00000448038 DCHS2Q6V1P9 2916 aa4.63□□□□□ -1.67
SYNE1-213ENST00000448038 LAMA5O15230 3695 aa4.63□□□□□ -1.67
SYNE1-213ENST00000448038 DSCR10P59022 87 aa4.62□□□□□ -1.67
SYNE1-213ENST00000448038 ATP11AUNQ6ZP68 121 aa4.62□□□□□ -1.67
SYNE1-213ENST00000448038 C8orf17Q9NRJ1 99 aa4.62□□□□□ -1.67
SYNE1-213ENST00000448038 A0A1B0GVX0 72 aa4.61□□□□□ -1.67
SYNE1-213ENST00000448038 NF1P21359 2839 aa4.61□□□□□ -1.67
SYNE1-213ENST00000448038 SMIM26A0A096LP01 95 aa4.61□□□□□ -1.67
SYNE1-213ENST00000448038 ASH1LQ9NR48 2969 aaKnown RBP4.61□□□□□ -1.67
SYNE1-213ENST00000448038 C7orf65Q6ZTY9 151 aa4.61□□□□□ -1.67
SYNE1-213ENST00000448038 H3BPC8 53 aa4.61□□□□□ -1.67
SYNE1-213ENST00000448038 WDFY3Q8IZQ1 3526 aa4.61□□□□□ -1.67
SYNE1-213ENST00000448038 KRTAP21-3Q3LHN1 58 aa4.6□□□□□ -1.67
SYNE1-213ENST00000448038 OBSCN-AS1Q96MR7 158 aa4.6□□□□□ -1.67
SYNE1-213ENST00000448038 SPRR1AP35321 89 aa4.6□□□□□ -1.67
SYNE1-213ENST00000448038 FBN2P35556 2912 aa4.6□□□□□ -1.67
SYNE1-213ENST00000448038 C9orf92A6NGG3 77 aa4.6□□□□□ -1.67
SYNE1-213ENST00000448038 A6NED7 52 aa4.59□□□□□ -1.67
SYNE1-213ENST00000448038 KRTAP10-2P60368 255 aa4.59□□□□□ -1.67
SYNE1-213ENST00000448038 Q6ZR54 194 aa4.59□□□□□ -1.68
SYNE1-213ENST00000448038 ASPMQ8IZT6 3477 aa4.58□□□□□ -1.68
SYNE1-213ENST00000448038 PRR26Q8N8Z3 221 aa4.58□□□□□ -1.68
SYNE1-213ENST00000448038 STAB2Q8WWQ8 2551 aa4.57□□□□□ -1.68
SYNE1-213ENST00000448038 KRTAP10-1P60331 282 aa4.57□□□□□ -1.68
SYNE1-213ENST00000448038 LOC101927531A0A1B0GV80 90 aa4.57□□□□□ -1.68
SYNE1-213ENST00000448038 ACYP2P14621 99 aa4.57□□□□□ -1.68
SYNE1-213ENST00000448038 LINC01600Q96MT4 127 aa4.56□□□□□ -1.68
SYNE1-213ENST00000448038 CD164Q04900 197 aa4.55□□□□□ -1.68
SYNE1-213ENST00000448038 FAM229BQ4G0N7 80 aa4.55□□□□□ -1.68
SYNE1-213ENST00000448038 MXRA5Q9NR99 2828 aa4.54□□□□□ -1.68
SYNE1-213ENST00000448038 PANO1I0J062 215 aa4.53□□□□□ -1.68
SYNE1-213ENST00000448038 PSPHP1O15172 72 aa4.53□□□□□ -1.68
SYNE1-213ENST00000448038 SPRR1BP22528 89 aa4.52□□□□□ -1.69
SYNE1-213ENST00000448038 C1orf195Q5TG92 126 aa4.51□□□□□ -1.69
SYNE1-213ENST00000448038 Q6ZRN7 208 aaPredicted RBP4.51□□□□□ -1.69
SYNE1-213ENST00000448038 A0A0U1RQV1 116 aa4.49□□□□□ -1.69
SYNE1-213ENST00000448038 Q5VSD8 79 aa4.49□□□□□ -1.69
SYNE1-213ENST00000448038 PDZD2O15018 2839 aa4.49□□□□□ -1.69
SYNE1-213ENST00000448038 ZFHX4Q86UP3 3567 aa4.49□□□□□ -1.69
SYNE1-213ENST00000448038 IGLV8-61A0A075B6I0 122 aa4.48□□□□□ -1.69
SYNE1-213ENST00000448038 IGLV7-46A0A075B6I9 117 aa4.48□□□□□ -1.69
SYNE1-213ENST00000448038 A0A1B0GU69 56 aa4.48□□□□□ -1.69
SYNE1-213ENST00000448038 COX6B2Q6YFQ2 88 aa4.48□□□□□ -1.69
SYNE1-213ENST00000448038 KRTAP4-16G5E9R7 235 aaPredicted RBP4.47□□□□□ -1.69
SYNE1-213ENST00000448038 KLKP1Q107X0 134 aa4.47□□□□□ -1.69
SYNE1-213ENST00000448038 COA5Q86WW8 74 aa4.44□□□□□ -1.7
SYNE1-213ENST00000448038 RPS28P62857 69 aaKnown RBP4.44□□□□□ -1.7
SYNE1-213ENST00000448038 LINC00483Q53H64 154 aa4.43□□□□□ -1.7
SYNE1-213ENST00000448038 OCR1Q9BZK8 76 aa4.43□□□□□ -1.7
SYNE1-213ENST00000448038 LINC00472Q9H8W2 130 aa4.43□□□□□ -1.7
SYNE1-213ENST00000448038 KRTAP11-1Q8IUC1 163 aa4.42□□□□□ -1.7
SYNE1-213ENST00000448038 H7BZZ5 65 aa4.42□□□□□ -1.7
SYNE1-213ENST00000448038 NBPF19A0A087WUL8 3843 aa4.42□□□□□ -1.7
SYNE1-213ENST00000448038 KRTAP7-1Q8IUC3 87 aa4.42□□□□□ -1.7
SYNE1-213ENST00000448038 RBM12B-AS1Q9P1G2 102 aa4.42□□□□□ -1.7
SYNE1-213ENST00000448038 MMP24-AS1A0A0U1RRL7 71 aa4.41□□□□□ -1.7
SYNE1-213ENST00000448038 CELSR1Q9NYQ6 3014 aa4.41□□□□□ -1.7
SYNE1-213ENST00000448038 SMG1Q96Q15 3661 aaKnown RBP4.41□□□□□ -1.7
SYNE1-213ENST00000448038 OTOGQ6ZRI0 2925 aa4.4□□□□□ -1.7
SYNE1-213ENST00000448038 Q6ZSA8 131 aa4.4□□□□□ -1.71
SYNE1-213ENST00000448038 Q8N1X5 172 aa4.4□□□□□ -1.71
SYNE1-213ENST00000448038 A0A087X002 238 aa4.39□□□□□ -1.71
SYNE1-213ENST00000448038 PMAIP1Q13794 54 aa4.39□□□□□ -1.71
SYNE1-213ENST00000448038 SPANXA2-OT1Q8N9U9 137 aa4.37□□□□□ -1.71
SYNE1-213ENST00000448038 DMBT1Q9UGM3 2413 aaPredicted RBP4.37□□□□□ -1.71
SYNE1-213ENST00000448038 TENM1Q9UKZ4 2725 aa4.36□□□□□ -1.71
SYNE1-213ENST00000448038 C4orf26Q17RF5 130 aa4.36□□□□□ -1.71
SYNE1-213ENST00000448038 ZCCHC13Q8WW36 166 aaKnown RBP4.36□□□□□ -1.71
SYNE1-213ENST00000448038 TENM3Q9P273 2699 aa4.34□□□□□ -1.71
SYNE1-213ENST00000448038 A8MUN3 132 aa4.34□□□□□ -1.71
SYNE1-213ENST00000448038 HRES1P13985 223 aa4.33□□□□□ -1.72
SYNE1-213ENST00000448038 KRTAP13-1Q8IUC0 172 aa4.33□□□□□ -1.72
SYNE1-213ENST00000448038 Q8N9P0 234 aaPredicted RBP4.32□□□□□ -1.72
SYNE1-213ENST00000448038 LINC01554Q52M75 96 aa4.32□□□□□ -1.72
SYNE1-213ENST00000448038 CYP4F30PQ9H0H9 118 aa4.31□□□□□ -1.72
SYNE1-213ENST00000448038 Q5W150 140 aa4.31□□□□□ -1.72
SYNE1-213ENST00000448038 ZFHX3Q15911 3703 aa4.31□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms