RNA–Protein interactions for RNA: ENST00000441222.7

USP46-201, Transcript of ubiquitin specific peptidase 46, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP46, Length 7,954 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP46-201ENST00000441222 NOTCH1P46531 2555 aa4.16□□□□□ -1.74
USP46-201ENST00000441222 PLAC8Q9NZF1 115 aa4.15□□□□□ -1.75
USP46-201ENST00000441222 STAB2Q8WWQ8 2551 aa4.15□□□□□ -1.75
USP46-201ENST00000441222 COL6A5A8TX70 2615 aa4.14□□□□□ -1.75
USP46-201ENST00000441222 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP4.14□□□□□ -1.75
USP46-201ENST00000441222 MMP24-AS1A0A0U1RRL7 71 aa4.13□□□□□ -1.75
USP46-201ENST00000441222 SPINK7P58062 85 aa4.13□□□□□ -1.75
USP46-201ENST00000441222 C5orf42Q9H799 3197 aa4.13□□□□□ -1.75
USP46-201ENST00000441222 RPL37P61927 97 aaKnown RBP4.13□□□□□ -1.75
USP46-201ENST00000441222 ASB16-AS1Q495Z4 193 aa4.13□□□□□ -1.75
USP46-201ENST00000441222 SPRR1AP35321 89 aa4.12□□□□□ -1.75
USP46-201ENST00000441222 ROMO1P60602 79 aa4.12□□□□□ -1.75
USP46-201ENST00000441222 Q5W150 140 aa4.11□□□□□ -1.75
USP46-201ENST00000441222 SPRR1BP22528 89 aa4.11□□□□□ -1.75
USP46-201ENST00000441222 PLAC4Q8WY50 150 aa4.1□□□□□ -1.75
USP46-201ENST00000441222 TEP1Q99973 2627 aaKnown RBP4.1□□□□□ -1.75
USP46-201ENST00000441222 LINC00472Q9H8W2 130 aa4.1□□□□□ -1.75
USP46-201ENST00000441222 Q5VV11 94 aa4.09□□□□□ -1.76
USP46-201ENST00000441222 KRTAP1-3Q8IUG1 177 aa4.08□□□□□ -1.76
USP46-201ENST00000441222 GCN1Q92616 2671 aaKnown RBP4.07□□□□□ -1.76
USP46-201ENST00000441222 GOLGB1Q14789 3259 aaKnown RBP4.07□□□□□ -1.76
USP46-201ENST00000441222 FP248Q71RG6 208 aaPredicted RBP4.07□□□□□ -1.76
USP46-201ENST00000441222 CFAP54Q96N23 3096 aa4.06□□□□□ -1.76
USP46-201ENST00000441222 H1FX-AS1Q4G0G2 97 aa4.06□□□□□ -1.76
USP46-201ENST00000441222 Q5XG85 94 aa4.05□□□□□ -1.76
USP46-201ENST00000441222 ITPR2Q14571 2701 aa4.05□□□□□ -1.76
USP46-201ENST00000441222 KRTAP1-1Q07627 177 aa4.05□□□□□ -1.76
USP46-201ENST00000441222 SETXQ7Z333 2677 aaKnown RBP4.05□□□□□ -1.76
USP46-201ENST00000441222 BAHCC1Q9P281 2608 aa4.04□□□□□ -1.76
USP46-201ENST00000441222 M0QZ58 72 aa4.04□□□□□ -1.76
USP46-201ENST00000441222 OXTP01178 125 aa4.04□□□□□ -1.76
USP46-201ENST00000441222 PRAC1Q96KF2 57 aa4.03□□□□□ -1.76
USP46-201ENST00000441222 PCNTO95613 3336 aa4.02□□□□□ -1.77
USP46-201ENST00000441222 Q6ZR54 194 aa4.02□□□□□ -1.77
USP46-201ENST00000441222 ZNF292O60281 2723 aa4.01□□□□□ -1.77
USP46-201ENST00000441222 A0A0C4DFX4 3053 aa3.99□□□□□ -1.77
USP46-201ENST00000441222 Q5VSD8 79 aa3.99□□□□□ -1.77
USP46-201ENST00000441222 KRTAP26-1Q6PEX3 210 aa3.99□□□□□ -1.77
USP46-201ENST00000441222 APCP25054 2843 aa3.98□□□□□ -1.77
USP46-201ENST00000441222 KRTAP16-1A8MUX0 517 aa3.98□□□□□ -1.77
USP46-201ENST00000441222 ADM2Q7Z4H4 148 aa3.97□□□□□ -1.77
USP46-201ENST00000441222 PANO1I0J062 215 aa3.97□□□□□ -1.77
USP46-201ENST00000441222 NSD1Q96L73 2696 aaPredicted RBP3.95□□□□□ -1.78
USP46-201ENST00000441222 Q8NDZ9 215 aa3.95□□□□□ -1.78
USP46-201ENST00000441222 RPS29P62273 56 aaKnown RBP3.95□□□□□ -1.78
USP46-201ENST00000441222 LCE6AA0A183 80 aa3.94□□□□□ -1.78
USP46-201ENST00000441222 SPATA8Q6RVD6 105 aa3.94□□□□□ -1.78
USP46-201ENST00000441222 CYSTM1Q9H1C7 97 aa3.94□□□□□ -1.78
USP46-201ENST00000441222 NDUFAF8A1L188 74 aa3.93□□□□□ -1.78
USP46-201ENST00000441222 MAP1AP78559 2803 aaPredicted RBP3.93□□□□□ -1.78
USP46-201ENST00000441222 IGSF10Q6WRI0 2623 aa3.92□□□□□ -1.78
USP46-201ENST00000441222 LAMA2P24043 3122 aaKnown RBP3.92□□□□□ -1.78
USP46-201ENST00000441222 NBEAL2Q6ZNJ1 2754 aa3.92□□□□□ -1.78
USP46-201ENST00000441222 MGAQ8IWI9 3026 aa3.91□□□□□ -1.78
USP46-201ENST00000441222 KRTAP10-1P60331 282 aa3.9□□□□□ -1.78
USP46-201ENST00000441222 KRTAP29-1A8MX34 341 aaPredicted RBP3.9□□□□□ -1.78
USP46-201ENST00000441222 KRTAP4-16G5E9R7 235 aaPredicted RBP3.89□□□□□ -1.79
USP46-201ENST00000441222 C20orf166-AS1Q96NR2 134 aa3.88□□□□□ -1.79
USP46-201ENST00000441222 KRTAP1-5Q9BYS1 174 aa3.88□□□□□ -1.79
USP46-201ENST00000441222 A8MUU9 505 aa3.88□□□□□ -1.79
USP46-201ENST00000441222 KRTAP25-1Q3LHN0 102 aa3.88□□□□□ -1.79
USP46-201ENST00000441222 UTRNP46939 3433 aa3.87□□□□□ -1.79
USP46-201ENST00000441222 UTP20O75691 2785 aaKnown RBP3.87□□□□□ -1.79
USP46-201ENST00000441222 KRTAP10-2P60368 255 aa3.86□□□□□ -1.79
USP46-201ENST00000441222 ITPR1Q14643 2758 aa3.85□□□□□ -1.79
USP46-201ENST00000441222 TNP1P09430 55 aa3.84□□□□□ -1.79
USP46-201ENST00000441222 A0A087X002 238 aa3.84□□□□□ -1.79
USP46-201ENST00000441222 FRYQ5TBA9 3013 aa3.84□□□□□ -1.79
USP46-201ENST00000441222 UBR5O95071 2799 aaPredicted RBP3.84□□□□□ -1.8
USP46-201ENST00000441222 CHD7Q9P2D1 2997 aa3.83□□□□□ -1.8
USP46-201ENST00000441222 TRANK1O15050 2925 aa3.82□□□□□ -1.8
USP46-201ENST00000441222 VPS13AQ96RL7 3174 aa3.81□□□□□ -1.8
USP46-201ENST00000441222 A6NN06 94 aa3.81□□□□□ -1.8
USP46-201ENST00000441222 FRYLO94915 3013 aa3.8□□□□□ -1.8
USP46-201ENST00000441222 NOTCH2NLQ7Z3S9 236 aa3.8□□□□□ -1.8
USP46-201ENST00000441222 PP632Q6XCG6 107 aa3.8□□□□□ -1.8
USP46-201ENST00000441222 TRIOO75962 3097 aa3.79□□□□□ -1.8
USP46-201ENST00000441222 WDFY4Q6ZS81 3184 aa3.79□□□□□ -1.8
USP46-201ENST00000441222 KALRNO60229 2985 aa3.78□□□□□ -1.8
USP46-201ENST00000441222 DSPP15924 2871 aaKnown RBP3.76□□□□□ -1.81
USP46-201ENST00000441222 FREM2Q5SZK8 3169 aa3.75□□□□□ -1.81
USP46-201ENST00000441222 PRUNE2Q8WUY3 3088 aa3.75□□□□□ -1.81
USP46-201ENST00000441222 A8MU10 97 aa3.75□□□□□ -1.81
USP46-201ENST00000441222 REV3LO60673 3130 aa3.74□□□□□ -1.81
USP46-201ENST00000441222 Q6ZRN7 208 aaPredicted RBP3.73□□□□□ -1.81
USP46-201ENST00000441222 ASH1LQ9NR48 2969 aaKnown RBP3.73□□□□□ -1.81
USP46-201ENST00000441222 C10orf95Q9H7T3 257 aa3.72□□□□□ -1.81
USP46-201ENST00000441222 CRYBG3Q68DQ2 2970 aa3.71□□□□□ -1.81
USP46-201ENST00000441222 KRTAP11-1Q8IUC1 163 aa3.71□□□□□ -1.81
USP46-201ENST00000441222 LRBAP50851 2863 aa3.71□□□□□ -1.82
USP46-201ENST00000441222 DMXL2Q8TDJ6 3036 aa3.7□□□□□ -1.82
USP46-201ENST00000441222 MKI67P46013 3256 aaKnown RBP3.7□□□□□ -1.82
USP46-201ENST00000441222 TENM1Q9UKZ4 2725 aa3.69□□□□□ -1.82
USP46-201ENST00000441222 KRTAP13-1Q8IUC0 172 aa3.69□□□□□ -1.82
USP46-201ENST00000441222 CELSR3Q9NYQ7 3312 aa3.69□□□□□ -1.82
USP46-201ENST00000441222 COL12A1Q99715 3063 aa3.68□□□□□ -1.82
USP46-201ENST00000441222 FLNCQ14315 2725 aa3.68□□□□□ -1.82
USP46-201ENST00000441222 UNC80Q8N2C7 3258 aa3.67□□□□□ -1.82
USP46-201ENST00000441222 KRTAP13-2Q52LG2 175 aa3.67□□□□□ -1.82
USP46-201ENST00000441222 XIRP2A4UGR9 3374 aa3.66□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 94.1 ms