RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP8.47□□□□□ -1.05
LIMS3-201ENST00000437679 CEND1Q8N111 149 aa8.47□□□□□ -1.05
LIMS3-201ENST00000437679 TMEM238LA0A1B0GVL6 79 aa8.46□□□□□ -1.06
LIMS3-201ENST00000437679 A6NJY4 79 aa8.46□□□□□ -1.06
LIMS3-201ENST00000437679 MUC2Q02817 5179 aa8.46□□□□□ -1.06
LIMS3-201ENST00000437679 A0A0G2JQZ4 141 aa8.45□□□□□ -1.06
LIMS3-201ENST00000437679 SNCGO76070 127 aa8.45□□□□□ -1.06
LIMS3-201ENST00000437679 H0YGX0 51 aa8.43□□□□□ -1.06
LIMS3-201ENST00000437679 Q5XG85 94 aa8.43□□□□□ -1.06
LIMS3-201ENST00000437679 PPDPFLQ8WWR9 84 aa8.43□□□□□ -1.06
LIMS3-201ENST00000437679 Q6JHZ5 121 aa8.42□□□□□ -1.06
LIMS3-201ENST00000437679 PRO1854Q9UHT4 67 aa8.42□□□□□ -1.06
LIMS3-201ENST00000437679 FXYD2P54710 66 aa8.41□□□□□ -1.06
LIMS3-201ENST00000437679 SNHG12Q9BXW3 62 aa8.41□□□□□ -1.06
LIMS3-201ENST00000437679 SEC61BP60468 96 aaKnown RBP8.4□□□□□ -1.06
LIMS3-201ENST00000437679 ASB16-AS1Q495Z4 193 aa8.4□□□□□ -1.06
LIMS3-201ENST00000437679 OCIAD2Q56VL3 154 aa8.4□□□□□ -1.06
LIMS3-201ENST00000437679 IGLV8-61A0A075B6I0 122 aa8.39□□□□□ -1.07
LIMS3-201ENST00000437679 TCL1BO95988 128 aa8.39□□□□□ -1.07
LIMS3-201ENST00000437679 HSD52Q0P140 79 aa8.39□□□□□ -1.07
LIMS3-201ENST00000437679 CLEC2BQ92478 149 aa8.38□□□□□ -1.07
LIMS3-201ENST00000437679 XP32Q5T750 250 aa8.37□□□□□ -1.07
LIMS3-201ENST00000437679 C1orf195Q5TG92 126 aa8.37□□□□□ -1.07
LIMS3-201ENST00000437679 IGFL1Q6UW32 110 aa8.36□□□□□ -1.07
LIMS3-201ENST00000437679 FAM218AQ96MZ4 157 aa8.36□□□□□ -1.07
LIMS3-201ENST00000437679 UQCR10Q9UDW1 63 aa8.36□□□□□ -1.07
LIMS3-201ENST00000437679 A0A1B0GX51 115 aa8.35□□□□□ -1.07
LIMS3-201ENST00000437679 C9orf92A6NGG3 77 aa8.35□□□□□ -1.07
LIMS3-201ENST00000437679 GHRHP01286 108 aa8.34□□□□□ -1.07
LIMS3-201ENST00000437679 TRBV7-7A0A0K0K1E9 115 aa8.33□□□□□ -1.08
LIMS3-201ENST00000437679 H3BUT2 72 aa8.33□□□□□ -1.08
LIMS3-201ENST00000437679 TRIAP1O43715 76 aa8.33□□□□□ -1.08
LIMS3-201ENST00000437679 PSMB2P49721 201 aa8.31□□□□□ -1.08
LIMS3-201ENST00000437679 K7ERJ3 54 aa8.3□□□□□ -1.08
LIMS3-201ENST00000437679 NDUFV3P56181 108 aaKnown RBP8.3□□□□□ -1.08
LIMS3-201ENST00000437679 COX6CP09669 75 aa8.29□□□□□ -1.08
LIMS3-201ENST00000437679 FABP2P12104 132 aa8.29□□□□□ -1.08
LIMS3-201ENST00000437679 FAT4Q6V0I7 4981 aa8.28□□□□□ -1.08
LIMS3-201ENST00000437679 DNAL4O96015 105 aa8.27□□□□□ -1.09
LIMS3-201ENST00000437679 H3BMG7 143 aa8.26□□□□□ -1.09
LIMS3-201ENST00000437679 KRTAP4-1Q9BYQ7 146 aa8.25□□□□□ -1.09
LIMS3-201ENST00000437679 H3BQ85 93 aa8.24□□□□□ -1.09
LIMS3-201ENST00000437679 Q6Q795 121 aa8.24□□□□□ -1.09
LIMS3-201ENST00000437679 TEN1Q86WV5 123 aa8.24□□□□□ -1.09
LIMS3-201ENST00000437679 ORMDL1Q9P0S3 153 aa8.24□□□□□ -1.09
LIMS3-201ENST00000437679 LST1O00453 97 aa8.23□□□□□ -1.09
LIMS3-201ENST00000437679 PCOTHQ58A44 107 aa8.23□□□□□ -1.09
LIMS3-201ENST00000437679 SS18L2Q9UHA2 77 aa8.23□□□□□ -1.09
LIMS3-201ENST00000437679 TMEM256-PLSCR3K7ERE1 68 aa8.2□□□□□ -1.1
LIMS3-201ENST00000437679 SCGB1C2P0DMR2 95 aa8.2□□□□□ -1.1
LIMS3-201ENST00000437679 LCE2AQ5TA79 106 aaPredicted RBP8.2□□□□□ -1.1
LIMS3-201ENST00000437679 A0A087WSZ3 146 aa8.18□□□□□ -1.1
LIMS3-201ENST00000437679 RPL37P61927 97 aaKnown RBP8.18□□□□□ -1.1
LIMS3-201ENST00000437679 TRACP01848 142 aa8.17□□□□□ -1.1
LIMS3-201ENST00000437679 SMIM6P0DI80 62 aa8.17□□□□□ -1.1
LIMS3-201ENST00000437679 ANKRD29Q8N6D5 301 aa8.17□□□□□ -1.1
LIMS3-201ENST00000437679 M0R143 59 aa8.16□□□□□ -1.1
LIMS3-201ENST00000437679 A0A1B0GV72 72 aa8.15□□□□□ -1.1
LIMS3-201ENST00000437679 A0A1W2PNM2 257 aa8.15□□□□□ -1.1
LIMS3-201ENST00000437679 UBE2V1Q13404 147 aa8.14□□□□□ -1.11
LIMS3-201ENST00000437679 OBSCN-AS1Q96MR7 158 aa8.14□□□□□ -1.11
LIMS3-201ENST00000437679 TRBV7-4A0A0J9YYF1 115 aa8.11□□□□□ -1.11
LIMS3-201ENST00000437679 CCKP06307 115 aa8.09□□□□□ -1.11
LIMS3-201ENST00000437679 Q96NJ1 140 aa8.09□□□□□ -1.11
LIMS3-201ENST00000437679 TSTD3H0UI37 97 aa8.08□□□□□ -1.12
LIMS3-201ENST00000437679 Q75L30 129 aa8.08□□□□□ -1.12
LIMS3-201ENST00000437679 BAALC-AS2P0C853 105 aa8.07□□□□□ -1.12
LIMS3-201ENST00000437679 RBM3P98179 157 aaKnown RBP8.07□□□□□ -1.12
LIMS3-201ENST00000437679 SIGMAR1Q99720 223 aa8.07□□□□□ -1.12
LIMS3-201ENST00000437679 ATXN8Q156A1 80 aa8.06□□□□□ -1.12
LIMS3-201ENST00000437679 ATP11AUNQ6ZP68 121 aa8.06□□□□□ -1.12
LIMS3-201ENST00000437679 DSCR8Q96T75 97 aa8.06□□□□□ -1.12
LIMS3-201ENST00000437679 NAA38Q9BRA0 125 aaKnown RBP8.05□□□□□ -1.12
LIMS3-201ENST00000437679 VPS25Q9BRG1 176 aa8.04□□□□□ -1.12
LIMS3-201ENST00000437679 IGKV4-1P06312 121 aa8.03□□□□□ -1.12
LIMS3-201ENST00000437679 LCE2DQ5TA82 110 aaPredicted RBP8.03□□□□□ -1.12
LIMS3-201ENST00000437679 LCE2CQ5TA81 110 aa8.02□□□□□ -1.13
LIMS3-201ENST00000437679 LYRM7Q5U5X0 104 aa8.02□□□□□ -1.13
LIMS3-201ENST00000437679 LOC105371267A0A1B0GV96 52 aa8.01□□□□□ -1.13
LIMS3-201ENST00000437679 DSCR10P59022 87 aa8.01□□□□□ -1.13
LIMS3-201ENST00000437679 BATFQ16520 125 aa8.01□□□□□ -1.13
LIMS3-201ENST00000437679 KRTAP19-2Q3LHN2 52 aa8.01□□□□□ -1.13
LIMS3-201ENST00000437679 C20orf166-AS1Q96NR2 134 aa8.01□□□□□ -1.13
LIMS3-201ENST00000437679 C9JAW5 83 aa8□□□□□ -1.13
LIMS3-201ENST00000437679 LINC00472Q9H8W2 130 aa8□□□□□ -1.13
LIMS3-201ENST00000437679 A8MUU9 505 aa7.98□□□□□ -1.13
LIMS3-201ENST00000437679 LINC00313P59037 77 aa7.98□□□□□ -1.13
LIMS3-201ENST00000437679 C21orf62-AS1Q17RA5 79 aa7.98□□□□□ -1.13
LIMS3-201ENST00000437679 DEFB116Q30KQ4 102 aa7.98□□□□□ -1.13
LIMS3-201ENST00000437679 JMJD7-PLA2G4BH0Y9G9 81 aa7.97□□□□□ -1.13
LIMS3-201ENST00000437679 TRBV20-1A0A075B6N2 111 aa7.96□□□□□ -1.14
LIMS3-201ENST00000437679 COX6B2Q6YFQ2 88 aa7.96□□□□□ -1.14
LIMS3-201ENST00000437679 IGHV6-1A0A0B4J1U7 121 aa7.93□□□□□ -1.14
LIMS3-201ENST00000437679 MT1HP80294 61 aa7.93□□□□□ -1.14
LIMS3-201ENST00000437679 KRTAP9-2Q9BYQ4 174 aa7.93□□□□□ -1.14
LIMS3-201ENST00000437679 PDE6GP18545 87 aa7.92□□□□□ -1.14
LIMS3-201ENST00000437679 LOC110117498A0A087WWA1 95 aa7.91□□□□□ -1.14
LIMS3-201ENST00000437679 C9orf118A6NHY6 69 aa7.91□□□□□ -1.14
LIMS3-201ENST00000437679 J3KT08 172 aa7.91□□□□□ -1.14
LIMS3-201ENST00000437679 Q6ZQT0 140 aa7.91□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 95.2 ms