RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 JMJD7-PLA2G4BH0Y9G9 81 aa2.45□□□□□ -2.02
HMGB3-203ENST00000430118 H7C2G1 150 aa2.45□□□□□ -2.02
HMGB3-203ENST00000430118 CMC4P56277 68 aaPredicted RBP2.45□□□□□ -2.02
HMGB3-203ENST00000430118 ERHP84090 104 aaKnown RBP2.45□□□□□ -2.02
HMGB3-203ENST00000430118 DEFB114Q30KQ6 69 aa2.45□□□□□ -2.02
HMGB3-203ENST00000430118 Q5VSD8 79 aa2.45□□□□□ -2.02
HMGB3-203ENST00000430118 SND1-IT1Q9HBX3 110 aa2.45□□□□□ -2.02
HMGB3-203ENST00000430118 S4R3C0 116 aa2.45□□□□□ -2.02
HMGB3-203ENST00000430118 DSCAML1Q8TD84 2053 aa2.45□□□□□ -2.02
HMGB3-203ENST00000430118 RNF213Q63HN8 5207 aa2.44□□□□□ -2.02
HMGB3-203ENST00000430118 IGKV2D-24A0A075B6R9 120 aa2.44□□□□□ -2.02
HMGB3-203ENST00000430118 DEFB131BA0A096LNP1 70 aa2.44□□□□□ -2.02
HMGB3-203ENST00000430118 FUSP35637 526 aaKnown RBP eCLIP2.44□□□□□ -2.02
HMGB3-203ENST00000430118 CIRBPQ14011 172 aaKnown RBP2.44□□□□□ -2.02
HMGB3-203ENST00000430118 FAM229BQ4G0N7 80 aa2.44□□□□□ -2.02
HMGB3-203ENST00000430118 LINC00483Q53H64 154 aa2.44□□□□□ -2.02
HMGB3-203ENST00000430118 TMEM254Q8TBM7 123 aa2.44□□□□□ -2.02
HMGB3-203ENST00000430118 RMI2Q96E14 147 aa2.44□□□□□ -2.02
HMGB3-203ENST00000430118 UBL5Q9BZL1 73 aa2.44□□□□□ -2.02
HMGB3-203ENST00000430118 TNCP24821 2201 aa2.44□□□□□ -2.02
HMGB3-203ENST00000430118 FAT1Q14517 4588 aa2.43□□□□□ -2.02
HMGB3-203ENST00000430118 TRAV23DV6A0A075B6W5 121 aa2.43□□□□□ -2.02
HMGB3-203ENST00000430118 IGHV3-43A0A0B4J1X8 118 aa2.43□□□□□ -2.02
HMGB3-203ENST00000430118 H0YGX0 51 aa2.43□□□□□ -2.02
HMGB3-203ENST00000430118 H3BRN7 92 aa2.43□□□□□ -2.02
HMGB3-203ENST00000430118 CGB3P0DN86 165 aa2.43□□□□□ -2.02
HMGB3-203ENST00000430118 CGB7P0DN87 165 aa2.43□□□□□ -2.02
HMGB3-203ENST00000430118 SPANXN1Q5VSR9 72 aa2.43□□□□□ -2.02
HMGB3-203ENST00000430118 SOSTDC1Q6X4U4 206 aa2.43□□□□□ -2.02
HMGB3-203ENST00000430118 MIR7-3HGQ8N6C7 128 aa2.43□□□□□ -2.02
HMGB3-203ENST00000430118 ST20-AS1Q8NBB2 130 aa2.43□□□□□ -2.02
HMGB3-203ENST00000430118 NDUFA4L2Q9NRX3 87 aa2.43□□□□□ -2.02
HMGB3-203ENST00000430118 MRPL36Q9P0J6 103 aaKnown RBP2.43□□□□□ -2.02
HMGB3-203ENST00000430118 TRAV22A0A0B4J277 110 aa2.42□□□□□ -2.02
HMGB3-203ENST00000430118 TRBV6-5A0A0K0K1A5 114 aa2.42□□□□□ -2.02
HMGB3-203ENST00000430118 GNRH2O43555 120 aa2.42□□□□□ -2.02
HMGB3-203ENST00000430118 CTSGP08311 255 aa2.42□□□□□ -2.02
HMGB3-203ENST00000430118 SAA1P0DJI8 122 aaPredicted RBP2.42□□□□□ -2.02
HMGB3-203ENST00000430118 SAA2P0DJI9 122 aaPredicted RBP2.42□□□□□ -2.02
HMGB3-203ENST00000430118 KRTAP5-1Q6L8H4 278 aa2.42□□□□□ -2.02
HMGB3-203ENST00000430118 GPHB5Q86YW7 130 aa2.42□□□□□ -2.02
HMGB3-203ENST00000430118 LINC00269Q8N2A0 174 aa2.42□□□□□ -2.02
HMGB3-203ENST00000430118 LIMD2Q9BT23 127 aa2.42□□□□□ -2.02
HMGB3-203ENST00000430118 NDUFA1O15239 70 aa2.41□□□□□ -2.02
HMGB3-203ENST00000430118 IGHV3-30-3P0DP02 117 aa2.41□□□□□ -2.02
HMGB3-203ENST00000430118 KRTAP10-5P60370 271 aa2.41□□□□□ -2.02
HMGB3-203ENST00000430118 LINC01554Q52M75 96 aa2.41□□□□□ -2.02
HMGB3-203ENST00000430118 Q5VV11 94 aa2.41□□□□□ -2.02
HMGB3-203ENST00000430118 ENHOQ6UWT2 76 aa2.41□□□□□ -2.02
HMGB3-203ENST00000430118 KRTAP11-1Q8IUC1 163 aa2.41□□□□□ -2.02
HMGB3-203ENST00000430118 TMEM167AQ8TBQ9 72 aa2.41□□□□□ -2.02
HMGB3-203ENST00000430118 LINC00167Q96N53 147 aa2.41□□□□□ -2.02
HMGB3-203ENST00000430118 C14orf132Q9NPU4 83 aa2.41□□□□□ -2.02
HMGB3-203ENST00000430118 NDUFA12Q9UI09 145 aa2.41□□□□□ -2.02
HMGB3-203ENST00000430118 SNURFQ9Y675 71 aa2.41□□□□□ -2.02
HMGB3-203ENST00000430118 VPS13BQ7Z7G8 4022 aa2.41□□□□□ -2.02
HMGB3-203ENST00000430118 IGKV2-28A0A075B6P5 120 aa2.4□□□□□ -2.03
HMGB3-203ENST00000430118 TRBV6-8A0A0A6YYG3 113 aa2.4□□□□□ -2.03
HMGB3-203ENST00000430118 NBDYA0A0U1RRE5 68 aa2.4□□□□□ -2.03
HMGB3-203ENST00000430118 H3BQ85 93 aa2.4□□□□□ -2.03
HMGB3-203ENST00000430118 DEFB4AO15263 64 aa2.4□□□□□ -2.03
HMGB3-203ENST00000430118 IGKV2D-28P01615 120 aa2.4□□□□□ -2.03
HMGB3-203ENST00000430118 PDE6GP18545 87 aa2.4□□□□□ -2.03
HMGB3-203ENST00000430118 S100A4P26447 101 aaKnown RBP2.4□□□□□ -2.03
HMGB3-203ENST00000430118 POLR2KP53803 58 aaKnown RBP2.4□□□□□ -2.03
HMGB3-203ENST00000430118 CCL18P55774 89 aa2.4□□□□□ -2.03
HMGB3-203ENST00000430118 MP68P56378 58 aa2.4□□□□□ -2.03
HMGB3-203ENST00000430118 ELOF1P60002 83 aaKnown RBP2.4□□□□□ -2.03
HMGB3-203ENST00000430118 NREPQ16612 68 aa2.4□□□□□ -2.03
HMGB3-203ENST00000430118 FAM19A3Q7Z5A8 133 aa2.4□□□□□ -2.03
HMGB3-203ENST00000430118 Q8NAQ8 132 aa2.4□□□□□ -2.03
HMGB3-203ENST00000430118 CDC42SE1Q9NRR8 79 aa2.4□□□□□ -2.03
HMGB3-203ENST00000430118 LENEPQ9Y5L5 61 aa2.4□□□□□ -2.03
HMGB3-203ENST00000430118 LOC110117498A0A087WWA1 95 aa2.39□□□□□ -2.03
HMGB3-203ENST00000430118 LOC101927531A0A1B0GV80 90 aa2.39□□□□□ -2.03
HMGB3-203ENST00000430118 SPART-AS1P0CW21 52 aa2.39□□□□□ -2.03
HMGB3-203ENST00000430118 LINC00313P59037 77 aa2.39□□□□□ -2.03
HMGB3-203ENST00000430118 LINC00308Q8TCZ7 52 aa2.39□□□□□ -2.03
HMGB3-203ENST00000430118 DEFB104AQ8WTQ1 72 aa2.39□□□□□ -2.03
HMGB3-203ENST00000430118 ZNF625Q96I27 306 aaPredicted RBP2.39□□□□□ -2.03
HMGB3-203ENST00000430118 ORMDL1Q9P0S3 153 aa2.39□□□□□ -2.03
HMGB3-203ENST00000430118 IGHV3OR16-8A0A075B7F1 116 aa2.38□□□□□ -2.03
HMGB3-203ENST00000430118 TRAV12-3A0A0B4J271 114 aa2.38□□□□□ -2.03
HMGB3-203ENST00000430118 PSCAO43653 123 aa2.38□□□□□ -2.03
HMGB3-203ENST00000430118 CRPP02741 224 aa2.38□□□□□ -2.03
HMGB3-203ENST00000430118 IGLV7-43P04211 117 aa2.38□□□□□ -2.03
HMGB3-203ENST00000430118 IGKV1-16P04430 117 aa2.38□□□□□ -2.03
HMGB3-203ENST00000430118 APELAP0DMC3 54 aa2.38□□□□□ -2.03
HMGB3-203ENST00000430118 WT1-ASQ06250 92 aa2.38□□□□□ -2.03
HMGB3-203ENST00000430118 RPL39P5Q59GN2 51 aa2.38□□□□□ -2.03
HMGB3-203ENST00000430118 Q9BRP9 147 aa2.38□□□□□ -2.03
HMGB3-203ENST00000430118 ZNF706Q9Y5V0 76 aaPredicted RBP2.38□□□□□ -2.03
HMGB3-203ENST00000430118 IGHV3-21A0A0B4J1V1 117 aa2.37□□□□□ -2.03
HMGB3-203ENST00000430118 LRCOL1A6NCL2 159 aa2.37□□□□□ -2.03
HMGB3-203ENST00000430118 HCG22E2RYF7 251 aa2.37□□□□□ -2.03
HMGB3-203ENST00000430118 NDUFA4O00483 81 aa2.37□□□□□ -2.03
HMGB3-203ENST00000430118 NDUFB1O75438 58 aa2.37□□□□□ -2.03
HMGB3-203ENST00000430118 HTN3P15516 51 aa2.37□□□□□ -2.03
HMGB3-203ENST00000430118 C1orf64Q8NEQ6 169 aa2.37□□□□□ -2.03
HMGB3-203ENST00000430118 CDC42SE2Q9NRR3 84 aa2.37□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms