RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 SPATA8Q6RVD6 105 aa8.09□□□□□ -1.11
COL6A3-206ENST00000409809 LINC00472Q9H8W2 130 aa8.09□□□□□ -1.11
COL6A3-206ENST00000409809 SPRR1AP35321 89 aa8.09□□□□□ -1.12
COL6A3-206ENST00000409809 A6NN06 94 aa8.08□□□□□ -1.12
COL6A3-206ENST00000409809 ZCCHC13Q8WW36 166 aaKnown RBP8.08□□□□□ -1.12
COL6A3-206ENST00000409809 SPRR1BP22528 89 aa8.08□□□□□ -1.12
COL6A3-206ENST00000409809 A0A087WTM6 91 aa8.06□□□□□ -1.12
COL6A3-206ENST00000409809 ITPR2Q14571 2701 aa8.05□□□□□ -1.12
COL6A3-206ENST00000409809 SEC61BP60468 96 aaKnown RBP8.05□□□□□ -1.12
COL6A3-206ENST00000409809 C9orf92A6NGG3 77 aa8.04□□□□□ -1.12
COL6A3-206ENST00000409809 Q5W150 140 aa8.03□□□□□ -1.12
COL6A3-206ENST00000409809 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.03□□□□□ -1.12
COL6A3-206ENST00000409809 S4R3F8 94 aa8.03□□□□□ -1.12
COL6A3-206ENST00000409809 A0A1W2PNN7 141 aa8.01□□□□□ -1.13
COL6A3-206ENST00000409809 NSD1Q96L73 2696 aaPredicted RBP8.01□□□□□ -1.13
COL6A3-206ENST00000409809 H1FX-AS1Q4G0G2 97 aa8.01□□□□□ -1.13
COL6A3-206ENST00000409809 ZNF575Q86XF7 245 aa8.01□□□□□ -1.13
COL6A3-206ENST00000409809 A0A0G2JQZ4 141 aa8□□□□□ -1.13
COL6A3-206ENST00000409809 KRTAP25-1Q3LHN0 102 aa7.99□□□□□ -1.13
COL6A3-206ENST00000409809 KRTAP24-1Q3LI83 254 aa7.97□□□□□ -1.13
COL6A3-206ENST00000409809 MAP1AP78559 2803 aaPredicted RBP7.97□□□□□ -1.13
COL6A3-206ENST00000409809 BAHCC1Q9P281 2608 aa7.95□□□□□ -1.14
COL6A3-206ENST00000409809 LCE6AA0A183 80 aa7.94□□□□□ -1.14
COL6A3-206ENST00000409809 R4GN34 69 aa7.92□□□□□ -1.14
COL6A3-206ENST00000409809 Q6ZSA8 131 aa7.92□□□□□ -1.14
COL6A3-206ENST00000409809 APCP25054 2843 aa7.91□□□□□ -1.14
COL6A3-206ENST00000409809 TRANK1O15050 2925 aa7.91□□□□□ -1.14
COL6A3-206ENST00000409809 ITPR1Q14643 2758 aa7.89□□□□□ -1.15
COL6A3-206ENST00000409809 ANAPC11Q9NYG5 84 aa7.85□□□□□ -1.15
COL6A3-206ENST00000409809 KRTAP29-1A8MX34 341 aaPredicted RBP7.85□□□□□ -1.15
COL6A3-206ENST00000409809 IGSF10Q6WRI0 2623 aa7.84□□□□□ -1.15
COL6A3-206ENST00000409809 PLAC8Q9NZF1 115 aa7.83□□□□□ -1.16
COL6A3-206ENST00000409809 UTP20O75691 2785 aaKnown RBP7.82□□□□□ -1.16
COL6A3-206ENST00000409809 K7EIL1 84 aa7.82□□□□□ -1.16
COL6A3-206ENST00000409809 SMR3BP02814 79 aaPredicted RBP7.81□□□□□ -1.16
COL6A3-206ENST00000409809 DNAH12Q6ZR08 3092 aa7.81□□□□□ -1.16
COL6A3-206ENST00000409809 KRTAP26-1Q6PEX3 210 aa7.81□□□□□ -1.16
COL6A3-206ENST00000409809 CEP350Q5VT06 3117 aa7.79□□□□□ -1.16
COL6A3-206ENST00000409809 UBR5O95071 2799 aaPredicted RBP7.78□□□□□ -1.16
COL6A3-206ENST00000409809 KRTAP10-11P60412 298 aa7.78□□□□□ -1.16
COL6A3-206ENST00000409809 PANO1I0J062 215 aa7.76□□□□□ -1.17
COL6A3-206ENST00000409809 M0QZ58 72 aa7.76□□□□□ -1.17
COL6A3-206ENST00000409809 SRCAPQ6ZRS2 3230 aa7.75□□□□□ -1.17
COL6A3-206ENST00000409809 NDUFAF8A1L188 74 aa7.74□□□□□ -1.17
COL6A3-206ENST00000409809 M0R2T5 61 aa7.73□□□□□ -1.17
COL6A3-206ENST00000409809 FLNCQ14315 2725 aa7.72□□□□□ -1.17
COL6A3-206ENST00000409809 NBEAL2Q6ZNJ1 2754 aa7.72□□□□□ -1.17
COL6A3-206ENST00000409809 CASC10Q5T4H9 136 aa7.71□□□□□ -1.17
COL6A3-206ENST00000409809 PLAC4Q8WY50 150 aa7.71□□□□□ -1.18
COL6A3-206ENST00000409809 Q8NDZ9 215 aa7.7□□□□□ -1.18
COL6A3-206ENST00000409809 A0A0C4DFX4 3053 aa7.7□□□□□ -1.18
COL6A3-206ENST00000409809 DSPP15924 2871 aaKnown RBP7.7□□□□□ -1.18
COL6A3-206ENST00000409809 KRTAP4-16G5E9R7 235 aaPredicted RBP7.69□□□□□ -1.18
COL6A3-206ENST00000409809 RPS29P62273 56 aaKnown RBP7.67□□□□□ -1.18
COL6A3-206ENST00000409809 NOTCH2NLQ7Z3S9 236 aa7.67□□□□□ -1.18
COL6A3-206ENST00000409809 PP632Q6XCG6 107 aa7.65□□□□□ -1.19
COL6A3-206ENST00000409809 KRTAP1-3Q8IUG1 177 aa7.61□□□□□ -1.19
COL6A3-206ENST00000409809 MGAQ8IWI9 3026 aa7.6□□□□□ -1.19
COL6A3-206ENST00000409809 NIPBLQ6KC79 2804 aaeCLIP7.59□□□□□ -1.19
COL6A3-206ENST00000409809 KRTAP1-1Q07627 177 aa7.58□□□□□ -1.2
COL6A3-206ENST00000409809 C20orf166-AS1Q96NR2 134 aa7.58□□□□□ -1.2
COL6A3-206ENST00000409809 CHD7Q9P2D1 2997 aa7.58□□□□□ -1.2
COL6A3-206ENST00000409809 GOLGB1Q14789 3259 aaKnown RBP7.56□□□□□ -1.2
COL6A3-206ENST00000409809 ADM2Q7Z4H4 148 aa7.55□□□□□ -1.2
COL6A3-206ENST00000409809 A8MUU9 505 aa7.55□□□□□ -1.2
COL6A3-206ENST00000409809 KRTAP11-1Q8IUC1 163 aa7.54□□□□□ -1.2
COL6A3-206ENST00000409809 KRTAP10-3P60369 221 aa7.54□□□□□ -1.2
COL6A3-206ENST00000409809 CHD9Q3L8U1 2897 aa7.53□□□□□ -1.2
COL6A3-206ENST00000409809 HIVEP1P15822 2718 aa7.51□□□□□ -1.21
COL6A3-206ENST00000409809 LRBAP50851 2863 aa7.51□□□□□ -1.21
COL6A3-206ENST00000409809 CFAP54Q96N23 3096 aa7.46□□□□□ -1.21
COL6A3-206ENST00000409809 C5orf42Q9H799 3197 aa7.42□□□□□ -1.22
COL6A3-206ENST00000409809 PCNTO95613 3336 aa7.41□□□□□ -1.22
COL6A3-206ENST00000409809 TNP1P09430 55 aa7.39□□□□□ -1.23
COL6A3-206ENST00000409809 FRYLO94915 3013 aa7.35□□□□□ -1.23
COL6A3-206ENST00000409809 A8MU10 97 aa7.32□□□□□ -1.24
COL6A3-206ENST00000409809 LAMA2P24043 3122 aaKnown RBP7.29□□□□□ -1.24
COL6A3-206ENST00000409809 FRYQ5TBA9 3013 aa7.29□□□□□ -1.24
COL6A3-206ENST00000409809 TENM3Q9P273 2699 aa7.28□□□□□ -1.24
COL6A3-206ENST00000409809 P0C880 135 aa7.28□□□□□ -1.24
COL6A3-206ENST00000409809 C10orf95Q9H7T3 257 aa7.27□□□□□ -1.25
COL6A3-206ENST00000409809 VPS13AQ96RL7 3174 aa7.26□□□□□ -1.25
COL6A3-206ENST00000409809 RANBP2P49792 3224 aaKnown RBP7.25□□□□□ -1.25
COL6A3-206ENST00000409809 KALRNO60229 2985 aa7.25□□□□□ -1.25
COL6A3-206ENST00000409809 NF1P21359 2839 aa7.23□□□□□ -1.25
COL6A3-206ENST00000409809 KRTAP1-5Q9BYS1 174 aa7.23□□□□□ -1.25
COL6A3-206ENST00000409809 TENM1Q9UKZ4 2725 aa7.23□□□□□ -1.25
COL6A3-206ENST00000409809 TGP01266 2768 aa7.22□□□□□ -1.25
COL6A3-206ENST00000409809 Q5VSD8 79 aa7.2□□□□□ -1.26
COL6A3-206ENST00000409809 KRTAP13-1Q8IUC0 172 aa7.2□□□□□ -1.26
COL6A3-206ENST00000409809 CELSR2Q9HCU4 2923 aa7.17□□□□□ -1.26
COL6A3-206ENST00000409809 PRUNE2Q8WUY3 3088 aa7.17□□□□□ -1.26
COL6A3-206ENST00000409809 TENM4Q6N022 2769 aa7.17□□□□□ -1.26
COL6A3-206ENST00000409809 ZZEF1O43149 2961 aa7.16□□□□□ -1.26
COL6A3-206ENST00000409809 Q6ZRN7 208 aaPredicted RBP7.16□□□□□ -1.26
COL6A3-206ENST00000409809 WDFY4Q6ZS81 3184 aa7.15□□□□□ -1.26
COL6A3-206ENST00000409809 ASH1LQ9NR48 2969 aaKnown RBP7.14□□□□□ -1.27
COL6A3-206ENST00000409809 TRIOO75962 3097 aa7.14□□□□□ -1.27
COL6A3-206ENST00000409809 H0YAA0 97 aa7.13□□□□□ -1.27
COL6A3-206ENST00000409809 ZANQ9Y493 2812 aa7.1□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 62.1 ms