RNA–Protein interactions for RNA: ENST00000404008.6

USP42-202, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 2

Gene USP42, Length 1,380 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-202ENST00000404008 C9orf153Q5TBE3 101 aa17.1■□□□□ 0.33
USP42-202ENST00000404008 PCP4L1A6NKN8 68 aa17.09■□□□□ 0.33
USP42-202ENST00000404008 OCIAD2Q56VL3 154 aa17.08■□□□□ 0.32
USP42-202ENST00000404008 SSBP3-AS1Q7Z2R9 100 aa17.08■□□□□ 0.32
USP42-202ENST00000404008 LINC00304Q8N9R0 145 aa17.08■□□□□ 0.32
USP42-202ENST00000404008 Q8NBF4 154 aa17.08■□□□□ 0.32
USP42-202ENST00000404008 PPDPFLQ8WWR9 84 aa17.08■□□□□ 0.32
USP42-202ENST00000404008 LST1O00453 97 aa17.04■□□□□ 0.32
USP42-202ENST00000404008 TAX1BP3O14907 124 aa17.04■□□□□ 0.32
USP42-202ENST00000404008 DNAL4O96015 105 aa17.03■□□□□ 0.32
USP42-202ENST00000404008 TRACP01848 142 aa17.01■□□□□ 0.31
USP42-202ENST00000404008 C9orf118A6NHY6 69 aa17■□□□□ 0.31
USP42-202ENST00000404008 H3BUT2 72 aa17■□□□□ 0.31
USP42-202ENST00000404008 GHRHP01286 108 aa16.99■□□□□ 0.31
USP42-202ENST00000404008 SPAG11AQ6PDA7 123 aa16.97■□□□□ 0.31
USP42-202ENST00000404008 F8WEM9 126 aa16.96■□□□□ 0.31
USP42-202ENST00000404008 TCL1BO95988 128 aa16.96■□□□□ 0.31
USP42-202ENST00000404008 LYRM7Q5U5X0 104 aa16.96■□□□□ 0.31
USP42-202ENST00000404008 ORMDL1Q9P0S3 153 aa16.96■□□□□ 0.31
USP42-202ENST00000404008 C4orf48Q5BLP8 95 aa16.95■□□□□ 0.3
USP42-202ENST00000404008 COL5A1-AS1Q5SY13 56 aa16.95■□□□□ 0.3
USP42-202ENST00000404008 ATXN8Q156A1 80 aa16.93■□□□□ 0.3
USP42-202ENST00000404008 FABP2P12104 132 aa16.91■□□□□ 0.3
USP42-202ENST00000404008 IGLV8-61A0A075B6I0 122 aa16.9■□□□□ 0.3
USP42-202ENST00000404008 H3BQ85 93 aa16.9■□□□□ 0.3
USP42-202ENST00000404008 A0A1W2PPM0 123 aa16.89■□□□□ 0.3
USP42-202ENST00000404008 SPINK1P00995 79 aa16.89■□□□□ 0.3
USP42-202ENST00000404008 NDUFV3P56181 108 aaKnown RBP16.89■□□□□ 0.29
USP42-202ENST00000404008 TRBV20-1A0A075B6N2 111 aa16.88■□□□□ 0.29
USP42-202ENST00000404008 TMEM256-PLSCR3K7ERE1 68 aa16.87■□□□□ 0.29
USP42-202ENST00000404008 A0A0G2JQZ4 141 aa16.85■□□□□ 0.29
USP42-202ENST00000404008 Q6JHZ5 121 aa16.83■□□□□ 0.28
USP42-202ENST00000404008 RPS29P62273 56 aaKnown RBP16.82■□□□□ 0.28
USP42-202ENST00000404008 CD164Q04900 197 aa16.81■□□□□ 0.28
USP42-202ENST00000404008 IGFL1Q6UW32 110 aa16.8■□□□□ 0.28
USP42-202ENST00000404008 HRCT1Q6UXD1 115 aa16.8■□□□□ 0.28
USP42-202ENST00000404008 HMCN2Q8NDA2 5059 aa16.79■□□□□ 0.28
USP42-202ENST00000404008 H3BMG7 143 aa16.78■□□□□ 0.28
USP42-202ENST00000404008 BAALC-AS2P0C853 105 aa16.78■□□□□ 0.28
USP42-202ENST00000404008 UBE2V1Q13404 147 aa16.78■□□□□ 0.28
USP42-202ENST00000404008 C9JAW5 83 aa16.71■□□□□ 0.27
USP42-202ENST00000404008 ANKRD29Q8N6D5 301 aa16.71■□□□□ 0.27
USP42-202ENST00000404008 RETNLBQ9BQ08 111 aa16.71■□□□□ 0.27
USP42-202ENST00000404008 SPCS1Q9Y6A9 102 aa16.71■□□□□ 0.27
USP42-202ENST00000404008 A0A1B0GV72 72 aa16.69■□□□□ 0.26
USP42-202ENST00000404008 LIMD2Q9BT23 127 aa16.68■□□□□ 0.26
USP42-202ENST00000404008 PRR4Q16378 134 aa16.65■□□□□ 0.26
USP42-202ENST00000404008 Q5XG85 94 aa16.63■□□□□ 0.25
USP42-202ENST00000404008 TRBV7-7A0A0K0K1E9 115 aa16.62■□□□□ 0.25
USP42-202ENST00000404008 Q6Q795 121 aa16.61■□□□□ 0.25
USP42-202ENST00000404008 RBM3P98179 157 aaKnown RBP16.6■□□□□ 0.25
USP42-202ENST00000404008 TEN1Q86WV5 123 aa16.6■□□□□ 0.25
USP42-202ENST00000404008 K7EP34 96 aa16.59■□□□□ 0.25
USP42-202ENST00000404008 H3BT86 120 aa16.58■□□□□ 0.24
USP42-202ENST00000404008 MTURNQ8N3F0 131 aa16.58■□□□□ 0.24
USP42-202ENST00000404008 TRBV7-4A0A0J9YYF1 115 aa16.56■□□□□ 0.24
USP42-202ENST00000404008 A0A1W2PNM2 257 aa16.55■□□□□ 0.24
USP42-202ENST00000404008 FP248Q71RG6 208 aaPredicted RBP16.54■□□□□ 0.24
USP42-202ENST00000404008 JMJD7-PLA2G4BH0Y9G9 81 aa16.53■□□□□ 0.24
USP42-202ENST00000404008 DSCR8Q96T75 97 aa16.53■□□□□ 0.24
USP42-202ENST00000404008 IGLV7-46A0A075B6I9 117 aa16.5■□□□□ 0.23
USP42-202ENST00000404008 CCKP06307 115 aa16.49■□□□□ 0.23
USP42-202ENST00000404008 OBSCN-AS1Q96MR7 158 aa16.49■□□□□ 0.23
USP42-202ENST00000404008 LPAP08519 4548 aa16.48■□□□□ 0.23
USP42-202ENST00000404008 ASB16-AS1Q495Z4 193 aa16.48■□□□□ 0.23
USP42-202ENST00000404008 GTF2H5Q6ZYL4 71 aa16.48■□□□□ 0.23
USP42-202ENST00000404008 C1orf195Q5TG92 126 aa16.46■□□□□ 0.23
USP42-202ENST00000404008 PRO0461Q9UI25 63 aa16.45■□□□□ 0.22
USP42-202ENST00000404008 A0A087WSZ3 146 aa16.44■□□□□ 0.22
USP42-202ENST00000404008 SMCPP49901 116 aaPredicted RBP16.44■□□□□ 0.22
USP42-202ENST00000404008 SS18L2Q9UHA2 77 aa16.43■□□□□ 0.22
USP42-202ENST00000404008 LRP2P98164 4655 aa16.43■□□□□ 0.22
USP42-202ENST00000404008 LOC110117498A0A087WWA1 95 aa16.42■□□□□ 0.22
USP42-202ENST00000404008 C14orf132Q9NPU4 83 aa16.41■□□□□ 0.22
USP42-202ENST00000404008 Q6ZQT0 140 aa16.4■□□□□ 0.22
USP42-202ENST00000404008 VPS25Q9BRG1 176 aa16.4■□□□□ 0.22
USP42-202ENST00000404008 TPRXLQ17RH7 258 aa16.38■□□□□ 0.21
USP42-202ENST00000404008 PDE6GP18545 87 aa16.37■□□□□ 0.21
USP42-202ENST00000404008 KRTAP13-3Q3SY46 172 aa16.32■□□□□ 0.2
USP42-202ENST00000404008 F8W1H4 67 aa16.28■□□□□ 0.2
USP42-202ENST00000404008 Q96NJ1 140 aa16.27■□□□□ 0.2
USP42-202ENST00000404008 C21orf62-AS1Q17RA5 79 aa16.26■□□□□ 0.19
USP42-202ENST00000404008 A0A1B0GW54 56 aa16.25■□□□□ 0.19
USP42-202ENST00000404008 CDIP1Q9H305 208 aa16.22■□□□□ 0.19
USP42-202ENST00000404008 A0A1B0GV90 55 aa16.2■□□□□ 0.18
USP42-202ENST00000404008 UBR4Q5T4S7 5183 aa16.18■□□□□ 0.18
USP42-202ENST00000404008 LINC00472Q9H8W2 130 aa16.18■□□□□ 0.18
USP42-202ENST00000404008 C9orf92A6NGG3 77 aa16.13■□□□□ 0.17
USP42-202ENST00000404008 ETDBQ3ZM63 59 aa16.13■□□□□ 0.17
USP42-202ENST00000404008 IGKV4-1P06312 121 aa16.1■□□□□ 0.17
USP42-202ENST00000404008 DEFB116Q30KQ4 102 aa16.1■□□□□ 0.17
USP42-202ENST00000404008 SIGMAR1Q99720 223 aa16.09■□□□□ 0.17
USP42-202ENST00000404008 XP32Q5T750 250 aa16.06■□□□□ 0.16
USP42-202ENST00000404008 NREPQ16612 68 aa16■□□□□ 0.15
USP42-202ENST00000404008 J3KT08 172 aa16■□□□□ 0.15
USP42-202ENST00000404008 MUC17Q685J3 4493 aa15.92■□□□□ 0.14
USP42-202ENST00000404008 DSCR10P59022 87 aa15.88■□□□□ 0.13
USP42-202ENST00000404008 Q6ZVQ6 151 aa15.88■□□□□ 0.13
USP42-202ENST00000404008 LINC00846Q9NV44 126 aa15.88■□□□□ 0.13
USP42-202ENST00000404008 IGHV6-1A0A0B4J1U7 121 aa15.87■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 95.1 ms