RNA–Protein interactions for RNA: ENST00000395898.3

VPS13C-204, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13C, Length 11,012 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-204ENST00000395898 KRTAP1-1Q07627 177 aa3.45□□□□□ -1.86
VPS13C-204ENST00000395898 SPEGQ15772 3267 aa3.45□□□□□ -1.86
VPS13C-204ENST00000395898 Q1T7F1 81 aa3.45□□□□□ -1.86
VPS13C-204ENST00000395898 OCR1Q9BZK8 76 aa3.45□□□□□ -1.86
VPS13C-204ENST00000395898 TEX15Q9BXT5 2789 aa3.45□□□□□ -1.86
VPS13C-204ENST00000395898 FAM229BQ4G0N7 80 aa3.45□□□□□ -1.86
VPS13C-204ENST00000395898 CASC10Q5T4H9 136 aa3.44□□□□□ -1.86
VPS13C-204ENST00000395898 MYO15AQ9UKN7 3530 aa3.44□□□□□ -1.86
VPS13C-204ENST00000395898 Q6ZSA8 131 aa3.44□□□□□ -1.86
VPS13C-204ENST00000395898 LCA10Q71F78 164 aa3.44□□□□□ -1.86
VPS13C-204ENST00000395898 IGLV7-46A0A075B6I9 117 aa3.43□□□□□ -1.86
VPS13C-204ENST00000395898 LUZP6Q538Z0 58 aa3.43□□□□□ -1.86
VPS13C-204ENST00000395898 LINC01554Q52M75 96 aa3.43□□□□□ -1.86
VPS13C-204ENST00000395898 SPTBN5Q9NRC6 3674 aaKnown RBP3.43□□□□□ -1.86
VPS13C-204ENST00000395898 Q8N1X5 172 aa3.43□□□□□ -1.86
VPS13C-204ENST00000395898 TNP2Q05952 138 aa3.42□□□□□ -1.86
VPS13C-204ENST00000395898 BOD1L1Q8NFC6 3051 aa3.42□□□□□ -1.86
VPS13C-204ENST00000395898 KALRNO60229 2985 aa3.42□□□□□ -1.86
VPS13C-204ENST00000395898 NBEAL1Q6ZS30 2694 aa3.41□□□□□ -1.86
VPS13C-204ENST00000395898 A0A0D9SG42 100 aa3.41□□□□□ -1.86
VPS13C-204ENST00000395898 PLAC8Q9NZF1 115 aa3.41□□□□□ -1.86
VPS13C-204ENST00000395898 DSPP15924 2871 aaKnown RBP3.41□□□□□ -1.86
VPS13C-204ENST00000395898 FRYLO94915 3013 aa3.4□□□□□ -1.87
VPS13C-204ENST00000395898 EYSQ5T1H1 3165 aa3.39□□□□□ -1.87
VPS13C-204ENST00000395898 SPRR1AP35321 89 aa3.39□□□□□ -1.87
VPS13C-204ENST00000395898 MAP1AP78559 2803 aaPredicted RBP3.39□□□□□ -1.87
VPS13C-204ENST00000395898 CFAP47Q6ZTR5 3102 aa3.39□□□□□ -1.87
VPS13C-204ENST00000395898 A0A1B0GU33 70 aa3.39□□□□□ -1.87
VPS13C-204ENST00000395898 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP3.39□□□□□ -1.87
VPS13C-204ENST00000395898 ADGRG4Q8IZF6 3080 aa3.39□□□□□ -1.87
VPS13C-204ENST00000395898 Q75L30 129 aa3.38□□□□□ -1.87
VPS13C-204ENST00000395898 PRR26Q8N8Z3 221 aa3.38□□□□□ -1.87
VPS13C-204ENST00000395898 CAMK2N1Q7Z7J9 78 aa3.37□□□□□ -1.87
VPS13C-204ENST00000395898 UNC79Q9P2D8 2635 aa3.37□□□□□ -1.87
VPS13C-204ENST00000395898 LINC00483Q53H64 154 aa3.37□□□□□ -1.87
VPS13C-204ENST00000395898 ZNF292O60281 2723 aa3.37□□□□□ -1.87
VPS13C-204ENST00000395898 DMAC1Q96GE9 116 aa3.37□□□□□ -1.87
VPS13C-204ENST00000395898 STAB1Q9NY15 2570 aa3.37□□□□□ -1.87
VPS13C-204ENST00000395898 LRBAP50851 2863 aa3.37□□□□□ -1.87
VPS13C-204ENST00000395898 HRES1P13985 223 aa3.37□□□□□ -1.87
VPS13C-204ENST00000395898 GCN1Q92616 2671 aaKnown RBP3.36□□□□□ -1.87
VPS13C-204ENST00000395898 ITPR2Q14571 2701 aa3.36□□□□□ -1.87
VPS13C-204ENST00000395898 ZCCHC13Q8WW36 166 aaKnown RBP3.36□□□□□ -1.87
VPS13C-204ENST00000395898 M0R2T5 61 aa3.36□□□□□ -1.87
VPS13C-204ENST00000395898 CSAG1Q6PB30 78 aa3.36□□□□□ -1.87
VPS13C-204ENST00000395898 WDFY3Q8IZQ1 3526 aa3.35□□□□□ -1.87
VPS13C-204ENST00000395898 SPRR1BP22528 89 aa3.35□□□□□ -1.87
VPS13C-204ENST00000395898 S4R3F8 94 aa3.35□□□□□ -1.87
VPS13C-204ENST00000395898 MMP24-AS1A0A0U1RRL7 71 aa3.35□□□□□ -1.87
VPS13C-204ENST00000395898 LINC00472Q9H8W2 130 aa3.34□□□□□ -1.87
VPS13C-204ENST00000395898 ASH1LQ9NR48 2969 aaKnown RBP3.34□□□□□ -1.87
VPS13C-204ENST00000395898 TEP1Q99973 2627 aaKnown RBP3.34□□□□□ -1.87
VPS13C-204ENST00000395898 LINC01558Q9Y6Z2 57 aa3.33□□□□□ -1.88
VPS13C-204ENST00000395898 SEC61BP60468 96 aaKnown RBP3.32□□□□□ -1.88
VPS13C-204ENST00000395898 Q8N9P0 234 aaPredicted RBP3.32□□□□□ -1.88
VPS13C-204ENST00000395898 DMXL2Q8TDJ6 3036 aa3.32□□□□□ -1.88
VPS13C-204ENST00000395898 COL6A5A8TX70 2615 aa3.32□□□□□ -1.88
VPS13C-204ENST00000395898 LOC400499M0QZD8 3231 aa3.32□□□□□ -1.88
VPS13C-204ENST00000395898 COL12A1Q99715 3063 aa3.31□□□□□ -1.88
VPS13C-204ENST00000395898 R4GN34 69 aa3.31□□□□□ -1.88
VPS13C-204ENST00000395898 SPINK7P58062 85 aa3.31□□□□□ -1.88
VPS13C-204ENST00000395898 Q5W150 140 aa3.31□□□□□ -1.88
VPS13C-204ENST00000395898 Q8NDZ9 215 aa3.3□□□□□ -1.88
VPS13C-204ENST00000395898 ASPMQ8IZT6 3477 aa3.3□□□□□ -1.88
VPS13C-204ENST00000395898 APCP25054 2843 aa3.3□□□□□ -1.88
VPS13C-204ENST00000395898 DCHS1Q96JQ0 3298 aa3.29□□□□□ -1.88
VPS13C-204ENST00000395898 NBEAL2Q6ZNJ1 2754 aa3.29□□□□□ -1.88
VPS13C-204ENST00000395898 DMBT1Q9UGM3 2413 aaPredicted RBP3.29□□□□□ -1.88
VPS13C-204ENST00000395898 NBEAQ8NFP9 2946 aa3.29□□□□□ -1.88
VPS13C-204ENST00000395898 SETXQ7Z333 2677 aaKnown RBP3.28□□□□□ -1.88
VPS13C-204ENST00000395898 ATMQ13315 3056 aa3.28□□□□□ -1.88
VPS13C-204ENST00000395898 KRTAP26-1Q6PEX3 210 aa3.28□□□□□ -1.89
VPS13C-204ENST00000395898 TACC2O95359 2948 aa3.27□□□□□ -1.89
VPS13C-204ENST00000395898 NOTCH1P46531 2555 aa3.27□□□□□ -1.89
VPS13C-204ENST00000395898 FP248Q71RG6 208 aaPredicted RBP3.27□□□□□ -1.89
VPS13C-204ENST00000395898 Q5VSD8 79 aa3.27□□□□□ -1.89
VPS13C-204ENST00000395898 Q5VV11 94 aa3.26□□□□□ -1.89
VPS13C-204ENST00000395898 CRYBG3Q68DQ2 2970 aa3.26□□□□□ -1.89
VPS13C-204ENST00000395898 Q5XG85 94 aa3.26□□□□□ -1.89
VPS13C-204ENST00000395898 KRTAP1-5Q9BYS1 174 aa3.26□□□□□ -1.89
VPS13C-204ENST00000395898 Q6ZR54 194 aa3.26□□□□□ -1.89
VPS13C-204ENST00000395898 ZZEF1O43149 2961 aa3.25□□□□□ -1.89
VPS13C-204ENST00000395898 RPL37P61927 97 aaKnown RBP3.25□□□□□ -1.89
VPS13C-204ENST00000395898 STAB2Q8WWQ8 2551 aa3.25□□□□□ -1.89
VPS13C-204ENST00000395898 DMXL1Q9Y485 3027 aa3.25□□□□□ -1.89
VPS13C-204ENST00000395898 UTP20O75691 2785 aaKnown RBP3.25□□□□□ -1.89
VPS13C-204ENST00000395898 LCE6AA0A183 80 aa3.24□□□□□ -1.89
VPS13C-204ENST00000395898 KRTAP4-16G5E9R7 235 aaPredicted RBP3.24□□□□□ -1.89
VPS13C-204ENST00000395898 OXTP01178 125 aa3.24□□□□□ -1.89
VPS13C-204ENST00000395898 IGSF10Q6WRI0 2623 aa3.24□□□□□ -1.89
VPS13C-204ENST00000395898 BAHCC1Q9P281 2608 aa3.23□□□□□ -1.89
VPS13C-204ENST00000395898 ROMO1P60602 79 aa3.23□□□□□ -1.89
VPS13C-204ENST00000395898 CYSTM1Q9H1C7 97 aa3.23□□□□□ -1.89
VPS13C-204ENST00000395898 ASB16-AS1Q495Z4 193 aa3.23□□□□□ -1.89
VPS13C-204ENST00000395898 KRTAP10-1P60331 282 aa3.22□□□□□ -1.89
VPS13C-204ENST00000395898 NSD1Q96L73 2696 aaPredicted RBP3.22□□□□□ -1.89
VPS13C-204ENST00000395898 TNRC18O15417 2968 aaPredicted RBP3.22□□□□□ -1.89
VPS13C-204ENST00000395898 RPS29P62273 56 aaKnown RBP3.22□□□□□ -1.89
VPS13C-204ENST00000395898 KRTAP10-2P60368 255 aa3.22□□□□□ -1.89
VPS13C-204ENST00000395898 A0A0A0MQY5 61 aa3.21□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 167.1 ms