RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 SNCGO76070 127 aa12.32□□□□□ -0.44
CLN3-207ENST00000395653 PPDPFLQ8WWR9 84 aa12.31□□□□□ -0.44
CLN3-207ENST00000395653 CD164Q04900 197 aa12.3□□□□□ -0.44
CLN3-207ENST00000395653 F8WEM9 126 aa12.29□□□□□ -0.44
CLN3-207ENST00000395653 K7ERJ3 54 aa12.29□□□□□ -0.44
CLN3-207ENST00000395653 FAM218AQ96MZ4 157 aa12.29□□□□□ -0.44
CLN3-207ENST00000395653 TRIAP1O43715 76 aa12.28□□□□□ -0.44
CLN3-207ENST00000395653 TPRXLQ17RH7 258 aa12.28□□□□□ -0.44
CLN3-207ENST00000395653 A0A1B0GX51 115 aa12.28□□□□□ -0.44
CLN3-207ENST00000395653 OCIAD2Q56VL3 154 aa12.28□□□□□ -0.44
CLN3-207ENST00000395653 LIMD2Q9BT23 127 aa12.28□□□□□ -0.44
CLN3-207ENST00000395653 HRCT1Q6UXD1 115 aa12.27□□□□□ -0.45
CLN3-207ENST00000395653 LOC105371267A0A1B0GV96 52 aa12.25□□□□□ -0.45
CLN3-207ENST00000395653 IGLV8-61A0A075B6I0 122 aa12.23□□□□□ -0.45
CLN3-207ENST00000395653 PSMB2P49721 201 aa12.22□□□□□ -0.45
CLN3-207ENST00000395653 SNHG12Q9BXW3 62 aa12.22□□□□□ -0.45
CLN3-207ENST00000395653 Q6JHZ5 121 aa12.21□□□□□ -0.45
CLN3-207ENST00000395653 A0A0G2JQZ4 141 aa12.2□□□□□ -0.46
CLN3-207ENST00000395653 COX6CP09669 75 aa12.2□□□□□ -0.46
CLN3-207ENST00000395653 GHRHP01286 108 aa12.2□□□□□ -0.46
CLN3-207ENST00000395653 Q5XG85 94 aa12.2□□□□□ -0.46
CLN3-207ENST00000395653 M0R143 59 aa12.19□□□□□ -0.46
CLN3-207ENST00000395653 CLEC2BQ92478 149 aa12.19□□□□□ -0.46
CLN3-207ENST00000395653 CDIP1Q9H305 208 aa12.19□□□□□ -0.46
CLN3-207ENST00000395653 TSTD3H0UI37 97 aa12.17□□□□□ -0.46
CLN3-207ENST00000395653 KRTAP13-3Q3SY46 172 aa12.16□□□□□ -0.46
CLN3-207ENST00000395653 IGFL1Q6UW32 110 aa12.15□□□□□ -0.46
CLN3-207ENST00000395653 DNAL4O96015 105 aa12.13□□□□□ -0.47
CLN3-207ENST00000395653 NDUFV3P56181 108 aaKnown RBP12.12□□□□□ -0.47
CLN3-207ENST00000395653 RNF213Q63HN8 5207 aa12.11□□□□□ -0.47
CLN3-207ENST00000395653 H3BUT2 72 aa12.11□□□□□ -0.47
CLN3-207ENST00000395653 H3BQ85 93 aa12.09□□□□□ -0.47
CLN3-207ENST00000395653 FABP2P12104 132 aa12.09□□□□□ -0.47
CLN3-207ENST00000395653 ORMDL1Q9P0S3 153 aa12.09□□□□□ -0.47
CLN3-207ENST00000395653 TCL1BO95988 128 aa12.08□□□□□ -0.48
CLN3-207ENST00000395653 SCGB1C2P0DMR2 95 aa12.08□□□□□ -0.48
CLN3-207ENST00000395653 TRBV7-7A0A0K0K1E9 115 aa12.07□□□□□ -0.48
CLN3-207ENST00000395653 LST1O00453 97 aa12.05□□□□□ -0.48
CLN3-207ENST00000395653 TRACP01848 142 aa12.05□□□□□ -0.48
CLN3-207ENST00000395653 C1orf195Q5TG92 126 aa12.05□□□□□ -0.48
CLN3-207ENST00000395653 H3BMG7 143 aa12.04□□□□□ -0.48
CLN3-207ENST00000395653 TMEM256-PLSCR3K7ERE1 68 aa12.03□□□□□ -0.48
CLN3-207ENST00000395653 ASB16-AS1Q495Z4 193 aa12.03□□□□□ -0.48
CLN3-207ENST00000395653 MUC17Q685J3 4493 aa12.02□□□□□ -0.49
CLN3-207ENST00000395653 Q6Q795 121 aa12.02□□□□□ -0.49
CLN3-207ENST00000395653 TEN1Q86WV5 123 aa11.99□□□□□ -0.49
CLN3-207ENST00000395653 UBE2V1Q13404 147 aa11.97□□□□□ -0.49
CLN3-207ENST00000395653 BATFQ16520 125 aa11.95□□□□□ -0.5
CLN3-207ENST00000395653 NAA38Q9BRA0 125 aaKnown RBP11.95□□□□□ -0.5
CLN3-207ENST00000395653 XP32Q5T750 250 aa11.94□□□□□ -0.5
CLN3-207ENST00000395653 SS18L2Q9UHA2 77 aa11.94□□□□□ -0.5
CLN3-207ENST00000395653 ATXN8Q156A1 80 aa11.93□□□□□ -0.5
CLN3-207ENST00000395653 MUC2Q02817 5179 aa11.93□□□□□ -0.5
CLN3-207ENST00000395653 ANKRD29Q8N6D5 301 aa11.92□□□□□ -0.5
CLN3-207ENST00000395653 LYRM7Q5U5X0 104 aa11.91□□□□□ -0.5
CLN3-207ENST00000395653 C9orf92A6NGG3 77 aa11.9□□□□□ -0.5
CLN3-207ENST00000395653 A0A1B0GV72 72 aa11.89□□□□□ -0.51
CLN3-207ENST00000395653 A0A1W2PNM2 257 aa11.89□□□□□ -0.51
CLN3-207ENST00000395653 A0A087WSZ3 146 aa11.88□□□□□ -0.51
CLN3-207ENST00000395653 BAALC-AS2P0C853 105 aa11.88□□□□□ -0.51
CLN3-207ENST00000395653 SEC61BP60468 96 aaKnown RBP11.87□□□□□ -0.51
CLN3-207ENST00000395653 TRBV7-4A0A0J9YYF1 115 aa11.86□□□□□ -0.51
CLN3-207ENST00000395653 TRBV20-1A0A075B6N2 111 aa11.84□□□□□ -0.51
CLN3-207ENST00000395653 RBM3P98179 157 aaKnown RBP11.83□□□□□ -0.52
CLN3-207ENST00000395653 C9orf118A6NHY6 69 aa11.82□□□□□ -0.52
CLN3-207ENST00000395653 TAX1BP3O14907 124 aa11.82□□□□□ -0.52
CLN3-207ENST00000395653 CCKP06307 115 aa11.81□□□□□ -0.52
CLN3-207ENST00000395653 DSCR8Q96T75 97 aa11.79□□□□□ -0.52
CLN3-207ENST00000395653 Q96NJ1 140 aa11.77□□□□□ -0.52
CLN3-207ENST00000395653 A0A0U1RQV1 116 aa11.76□□□□□ -0.53
CLN3-207ENST00000395653 A0A1W2PPM0 123 aa11.76□□□□□ -0.53
CLN3-207ENST00000395653 JMJD7-PLA2G4BH0Y9G9 81 aa11.75□□□□□ -0.53
CLN3-207ENST00000395653 C9JAW5 83 aa11.74□□□□□ -0.53
CLN3-207ENST00000395653 VPS25Q9BRG1 176 aa11.72□□□□□ -0.53
CLN3-207ENST00000395653 RPL37P61927 97 aaKnown RBP11.7□□□□□ -0.54
CLN3-207ENST00000395653 C21orf62-AS1Q17RA5 79 aa11.69□□□□□ -0.54
CLN3-207ENST00000395653 PCOTHQ58A44 107 aa11.69□□□□□ -0.54
CLN3-207ENST00000395653 OBSCN-AS1Q96MR7 158 aa11.69□□□□□ -0.54
CLN3-207ENST00000395653 KRTAP4-1Q9BYQ7 146 aa11.69□□□□□ -0.54
CLN3-207ENST00000395653 LOC110117498A0A087WWA1 95 aa11.67□□□□□ -0.54
CLN3-207ENST00000395653 COL5A1-AS1Q5SY13 56 aa11.67□□□□□ -0.54
CLN3-207ENST00000395653 LINC00472Q9H8W2 130 aa11.67□□□□□ -0.54
CLN3-207ENST00000395653 SIGMAR1Q99720 223 aa11.66□□□□□ -0.54
CLN3-207ENST00000395653 H3BT86 120 aa11.65□□□□□ -0.54
CLN3-207ENST00000395653 PDE6GP18545 87 aa11.65□□□□□ -0.54
CLN3-207ENST00000395653 Q6ZQT0 140 aa11.65□□□□□ -0.54
CLN3-207ENST00000395653 IGKV4-1P06312 121 aa11.64□□□□□ -0.55
CLN3-207ENST00000395653 A0A1B0GW54 56 aa11.62□□□□□ -0.55
CLN3-207ENST00000395653 SPCS1Q9Y6A9 102 aa11.62□□□□□ -0.55
CLN3-207ENST00000395653 FAT4Q6V0I7 4981 aa11.62□□□□□ -0.55
CLN3-207ENST00000395653 C14orf132Q9NPU4 83 aa11.61□□□□□ -0.55
CLN3-207ENST00000395653 Q75L30 129 aa11.6□□□□□ -0.55
CLN3-207ENST00000395653 DEFB116Q30KQ4 102 aa11.59□□□□□ -0.55
CLN3-207ENST00000395653 MTURNQ8N3F0 131 aa11.59□□□□□ -0.55
CLN3-207ENST00000395653 PCP4L1A6NKN8 68 aa11.56□□□□□ -0.56
CLN3-207ENST00000395653 DSCR10P59022 87 aa11.55□□□□□ -0.56
CLN3-207ENST00000395653 C20orf166-AS1Q96NR2 134 aa11.54□□□□□ -0.56
CLN3-207ENST00000395653 LINC00313P59037 77 aa11.52□□□□□ -0.56
CLN3-207ENST00000395653 J3KT08 172 aa11.52□□□□□ -0.57
CLN3-207ENST00000395653 A8MUU9 505 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 117.1 ms