RNA–Protein interactions for RNA: ENST00000380833.8

CLCN4-202, Transcript of chloride voltage-gated channel 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLCN4, Length 6,750 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN4-202ENST00000380833 A8MU10 97 aa6.62□□□□□ -1.35
CLCN4-202ENST00000380833 CR1P17927 2039 aa6.62□□□□□ -1.35
CLCN4-202ENST00000380833 HECTD1Q9ULT8 2610 aa6.61□□□□□ -1.35
CLCN4-202ENST00000380833 Q5W150 140 aa6.61□□□□□ -1.35
CLCN4-202ENST00000380833 PCNTO95613 3336 aa6.6□□□□□ -1.35
CLCN4-202ENST00000380833 C20orf166-AS1Q96NR2 134 aa6.6□□□□□ -1.35
CLCN4-202ENST00000380833 KRTAP1-3Q8IUG1 177 aa6.59□□□□□ -1.35
CLCN4-202ENST00000380833 CEP350Q5VT06 3117 aa6.59□□□□□ -1.35
CLCN4-202ENST00000380833 DNAH12Q6ZR08 3092 aa6.57□□□□□ -1.36
CLCN4-202ENST00000380833 R4GN34 69 aa6.57□□□□□ -1.36
CLCN4-202ENST00000380833 A8MUU9 505 aa6.55□□□□□ -1.36
CLCN4-202ENST00000380833 KRTAP1-1Q07627 177 aa6.55□□□□□ -1.36
CLCN4-202ENST00000380833 PLAC4Q8WY50 150 aa6.55□□□□□ -1.36
CLCN4-202ENST00000380833 FLNBO75369 2602 aaKnown RBP6.54□□□□□ -1.36
CLCN4-202ENST00000380833 LINC00472Q9H8W2 130 aa6.54□□□□□ -1.36
CLCN4-202ENST00000380833 KRTAP21-3Q3LHN1 58 aa6.51□□□□□ -1.37
CLCN4-202ENST00000380833 EPG5Q9HCE0 2579 aa6.51□□□□□ -1.37
CLCN4-202ENST00000380833 C5orf42Q9H799 3197 aa6.5□□□□□ -1.37
CLCN4-202ENST00000380833 LCE6AA0A183 80 aa6.5□□□□□ -1.37
CLCN4-202ENST00000380833 ATRQ13535 2644 aa6.49□□□□□ -1.37
CLCN4-202ENST00000380833 PANO1I0J062 215 aa6.49□□□□□ -1.37
CLCN4-202ENST00000380833 M0QZ58 72 aa6.48□□□□□ -1.37
CLCN4-202ENST00000380833 KRTAP10-2P60368 255 aa6.47□□□□□ -1.37
CLCN4-202ENST00000380833 KRTAP29-1A8MX34 341 aaPredicted RBP6.45□□□□□ -1.38
CLCN4-202ENST00000380833 KRTAP10-1P60331 282 aa6.45□□□□□ -1.38
CLCN4-202ENST00000380833 KRTAP26-1Q6PEX3 210 aa6.42□□□□□ -1.38
CLCN4-202ENST00000380833 FLG2Q5D862 2391 aaPredicted RBP6.42□□□□□ -1.38
CLCN4-202ENST00000380833 PRRC2CQ9Y520 2896 aaKnown RBP6.42□□□□□ -1.38
CLCN4-202ENST00000380833 Q8NDZ9 215 aa6.41□□□□□ -1.38
CLCN4-202ENST00000380833 SPRR1AP35321 89 aa6.41□□□□□ -1.38
CLCN4-202ENST00000380833 NOTCH2NLQ7Z3S9 236 aa6.4□□□□□ -1.38
CLCN4-202ENST00000380833 KRTAP11-1Q8IUC1 163 aa6.4□□□□□ -1.39
CLCN4-202ENST00000380833 MAST4O15021 2626 aa6.39□□□□□ -1.39
CLCN4-202ENST00000380833 PLAC8Q9NZF1 115 aa6.38□□□□□ -1.39
CLCN4-202ENST00000380833 KRTAP1-5Q9BYS1 174 aa6.37□□□□□ -1.39
CLCN4-202ENST00000380833 SPRR1BP22528 89 aa6.37□□□□□ -1.39
CLCN4-202ENST00000380833 KRTAP4-16G5E9R7 235 aaPredicted RBP6.32□□□□□ -1.4
CLCN4-202ENST00000380833 ITPR3Q14573 2671 aa6.3□□□□□ -1.4
CLCN4-202ENST00000380833 FLNAP21333 2647 aaKnown RBP6.28□□□□□ -1.4
CLCN4-202ENST00000380833 CFAP46Q8IYW2 2715 aa6.26□□□□□ -1.41
CLCN4-202ENST00000380833 C10orf95Q9H7T3 257 aa6.26□□□□□ -1.41
CLCN4-202ENST00000380833 HELZ2Q9BYK8 2649 aaKnown RBP6.24□□□□□ -1.41
CLCN4-202ENST00000380833 XIRP2A4UGR9 3374 aa6.24□□□□□ -1.41
CLCN4-202ENST00000380833 CFAP54Q96N23 3096 aa6.23□□□□□ -1.41
CLCN4-202ENST00000380833 HTTP42858 3142 aa6.23□□□□□ -1.41
CLCN4-202ENST00000380833 CHD7Q9P2D1 2997 aa6.22□□□□□ -1.41
CLCN4-202ENST00000380833 MKI67P46013 3256 aaKnown RBP6.22□□□□□ -1.41
CLCN4-202ENST00000380833 BRCA2P51587 3418 aa6.2□□□□□ -1.42
CLCN4-202ENST00000380833 PP632Q6XCG6 107 aa6.19□□□□□ -1.42
CLCN4-202ENST00000380833 A0A0C4DFX4 3053 aa6.18□□□□□ -1.42
CLCN4-202ENST00000380833 STAB1Q9NY15 2570 aa6.18□□□□□ -1.42
CLCN4-202ENST00000380833 BAHCC1Q9P281 2608 aa6.16□□□□□ -1.42
CLCN4-202ENST00000380833 P0C880 135 aa6.16□□□□□ -1.42
CLCN4-202ENST00000380833 AKAP13Q12802 2813 aa6.16□□□□□ -1.42
CLCN4-202ENST00000380833 SETXQ7Z333 2677 aaKnown RBP6.15□□□□□ -1.43
CLCN4-202ENST00000380833 TEX15Q9BXT5 2789 aa6.14□□□□□ -1.43
CLCN4-202ENST00000380833 TEP1Q99973 2627 aaKnown RBP6.14□□□□□ -1.43
CLCN4-202ENST00000380833 A0A1B0GVY2 172 aa6.14□□□□□ -1.43
CLCN4-202ENST00000380833 FREM2Q5SZK8 3169 aa6.14□□□□□ -1.43
CLCN4-202ENST00000380833 CHD9Q3L8U1 2897 aa6.12□□□□□ -1.43
CLCN4-202ENST00000380833 LAMA3Q16787 3333 aa6.12□□□□□ -1.43
CLCN4-202ENST00000380833 LAMA2P24043 3122 aaKnown RBP6.11□□□□□ -1.43
CLCN4-202ENST00000380833 RANBP2P49792 3224 aaKnown RBP6.09□□□□□ -1.43
CLCN4-202ENST00000380833 CHD6Q8TD26 2715 aa6.09□□□□□ -1.43
CLCN4-202ENST00000380833 CELSR3Q9NYQ7 3312 aa6.08□□□□□ -1.44
CLCN4-202ENST00000380833 TRANK1O15050 2925 aa6.08□□□□□ -1.44
CLCN4-202ENST00000380833 NBEAL1Q6ZS30 2694 aa6.08□□□□□ -1.44
CLCN4-202ENST00000380833 CENPEQ02224 2701 aa6.05□□□□□ -1.44
CLCN4-202ENST00000380833 DMBT1Q9UGM3 2413 aaPredicted RBP6.05□□□□□ -1.44
CLCN4-202ENST00000380833 DNAH14Q0VDD8 3507 aa6.05□□□□□ -1.44
CLCN4-202ENST00000380833 CDH23Q9H251 3354 aa6.03□□□□□ -1.44
CLCN4-202ENST00000380833 STAB2Q8WWQ8 2551 aa6.02□□□□□ -1.45
CLCN4-202ENST00000380833 UNC80Q8N2C7 3258 aa6.01□□□□□ -1.45
CLCN4-202ENST00000380833 FRYQ5TBA9 3013 aa6.01□□□□□ -1.45
CLCN4-202ENST00000380833 TRIOO75962 3097 aa6.01□□□□□ -1.45
CLCN4-202ENST00000380833 MGAQ8IWI9 3026 aa6.01□□□□□ -1.45
CLCN4-202ENST00000380833 PRUNE2Q8WUY3 3088 aa6□□□□□ -1.45
CLCN4-202ENST00000380833 SZT2Q5T011 3432 aa6□□□□□ -1.45
CLCN4-202ENST00000380833 H0YAA0 97 aa6□□□□□ -1.45
CLCN4-202ENST00000380833 CRYBG3Q68DQ2 2970 aa5.99□□□□□ -1.45
CLCN4-202ENST00000380833 TNP1P09430 55 aa5.99□□□□□ -1.45
CLCN4-202ENST00000380833 KRTAP10-8P60410 259 aa5.97□□□□□ -1.45
CLCN4-202ENST00000380833 WDFY4Q6ZS81 3184 aa5.97□□□□□ -1.45
CLCN4-202ENST00000380833 COL6A5A8TX70 2615 aa5.94□□□□□ -1.46
CLCN4-202ENST00000380833 UNC79Q9P2D8 2635 aa5.94□□□□□ -1.46
CLCN4-202ENST00000380833 REV3LO60673 3130 aa5.93□□□□□ -1.46
CLCN4-202ENST00000380833 VPS13AQ96RL7 3174 aa5.89□□□□□ -1.47
CLCN4-202ENST00000380833 KRTAP13-2Q52LG2 175 aa5.88□□□□□ -1.47
CLCN4-202ENST00000380833 ZNF292O60281 2723 aa5.87□□□□□ -1.47
CLCN4-202ENST00000380833 NBEAL2Q6ZNJ1 2754 aa5.85□□□□□ -1.47
CLCN4-202ENST00000380833 CFAP47Q6ZTR5 3102 aa5.85□□□□□ -1.47
CLCN4-202ENST00000380833 VCANP13611 3396 aa5.85□□□□□ -1.47
CLCN4-202ENST00000380833 GCN1Q92616 2671 aaKnown RBP5.85□□□□□ -1.47
CLCN4-202ENST00000380833 NOTCH1P46531 2555 aa5.85□□□□□ -1.47
CLCN4-202ENST00000380833 KMT2BQ9UMN6 2715 aaPredicted RBP5.84□□□□□ -1.47
CLCN4-202ENST00000380833 KRTAP10-10P60014 251 aa5.81□□□□□ -1.48
CLCN4-202ENST00000380833 MAP1AP78559 2803 aaPredicted RBP5.81□□□□□ -1.48
CLCN4-202ENST00000380833 Q6ZRN7 208 aaPredicted RBP5.8□□□□□ -1.48
CLCN4-202ENST00000380833 COL6A3P12111 3177 aa5.78□□□□□ -1.48
CLCN4-202ENST00000380833 KRTAP7-1Q8IUC3 87 aa5.76□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms