RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 PRB2P02812 416 aaPredicted RBP10.31□□□□□ -0.76
SDC4-201ENST00000372733 DNAH3Q8TD57 4116 aa10.31□□□□□ -0.76
SDC4-201ENST00000372733 DNAH10Q8IVF4 4471 aa10.3□□□□□ -0.76
SDC4-201ENST00000372733 RPL37AP61513 92 aaKnown RBP10.3□□□□□ -0.76
SDC4-201ENST00000372733 COL6A5A8TX70 2615 aa10.29□□□□□ -0.76
SDC4-201ENST00000372733 KRTAP24-1Q3LI83 254 aa10.29□□□□□ -0.76
SDC4-201ENST00000372733 IGLV8-61A0A075B6I0 122 aa10.25□□□□□ -0.77
SDC4-201ENST00000372733 KRTAP1-5Q9BYS1 174 aa10.25□□□□□ -0.77
SDC4-201ENST00000372733 UBE2AP49459 152 aa10.24□□□□□ -0.77
SDC4-201ENST00000372733 C16orf90A8MZG2 172 aa10.24□□□□□ -0.77
SDC4-201ENST00000372733 NBEAL1Q6ZS30 2694 aa10.24□□□□□ -0.77
SDC4-201ENST00000372733 SRRM2Q9UQ35 2752 aaKnown RBP10.23□□□□□ -0.77
SDC4-201ENST00000372733 CYP4F30PQ9H0H9 118 aa10.23□□□□□ -0.77
SDC4-201ENST00000372733 HUWE1Q7Z6Z7 4374 aaKnown RBP10.23□□□□□ -0.77
SDC4-201ENST00000372733 KRTAP11-1Q8IUC1 163 aa10.23□□□□□ -0.77
SDC4-201ENST00000372733 MP68P56378 58 aa10.22□□□□□ -0.77
SDC4-201ENST00000372733 Q1T7F1 81 aa10.22□□□□□ -0.77
SDC4-201ENST00000372733 LINC00208Q96KT6 92 aa10.22□□□□□ -0.77
SDC4-201ENST00000372733 TRAV22A0A0B4J277 110 aa10.21□□□□□ -0.78
SDC4-201ENST00000372733 KRTAP29-1A8MX34 341 aaPredicted RBP10.21□□□□□ -0.78
SDC4-201ENST00000372733 CHTF8P0CG12 524 aa10.21□□□□□ -0.78
SDC4-201ENST00000372733 PSPHP1O15172 72 aa10.2□□□□□ -0.78
SDC4-201ENST00000372733 LYSTQ99698 3801 aa10.2□□□□□ -0.78
SDC4-201ENST00000372733 PHF5AQ7RTV0 110 aaKnown RBP10.2□□□□□ -0.78
SDC4-201ENST00000372733 NDUFB1O75438 58 aa10.19□□□□□ -0.78
SDC4-201ENST00000372733 CNBPP62633 177 aaKnown RBP10.18□□□□□ -0.78
SDC4-201ENST00000372733 CASC2Q6XLA1 102 aa10.18□□□□□ -0.78
SDC4-201ENST00000372733 H0Y9P7 68 aa10.17□□□□□ -0.78
SDC4-201ENST00000372733 C1orf195Q5TG92 126 aa10.17□□□□□ -0.78
SDC4-201ENST00000372733 DNAH9Q9NYC9 4486 aa10.16□□□□□ -0.78
SDC4-201ENST00000372733 PRR15Q8IV56 129 aa10.16□□□□□ -0.78
SDC4-201ENST00000372733 B9D2Q9BPU9 175 aa10.14□□□□□ -0.79
SDC4-201ENST00000372733 A8MWP4 228 aa10.13□□□□□ -0.79
SDC4-201ENST00000372733 LINC00472Q9H8W2 130 aa10.13□□□□□ -0.79
SDC4-201ENST00000372733 K7EIL1 84 aa10.12□□□□□ -0.79
SDC4-201ENST00000372733 SPRR1BP22528 89 aa10.11□□□□□ -0.79
SDC4-201ENST00000372733 A8MUN3 132 aa10.1□□□□□ -0.79
SDC4-201ENST00000372733 STAB2Q8WWQ8 2551 aa10.09□□□□□ -0.79
SDC4-201ENST00000372733 MGAM2Q2M2H8 2515 aa10.09□□□□□ -0.79
SDC4-201ENST00000372733 CSMD3Q7Z407 3707 aa10.08□□□□□ -0.8
SDC4-201ENST00000372733 H0Y9J4 135 aa10.07□□□□□ -0.8
SDC4-201ENST00000372733 UBE2DNLQ8IWF7 75 aa10.07□□□□□ -0.8
SDC4-201ENST00000372733 SPANXA2-OT1Q8N9U9 137 aa10.06□□□□□ -0.8
SDC4-201ENST00000372733 H3BPC8 53 aa10.05□□□□□ -0.8
SDC4-201ENST00000372733 MMP24-AS1A0A0U1RRL7 71 aa10.05□□□□□ -0.8
SDC4-201ENST00000372733 C9orf163Q8N9P6 203 aa10.03□□□□□ -0.8
SDC4-201ENST00000372733 PANO1I0J062 215 aa10.03□□□□□ -0.8
SDC4-201ENST00000372733 C14orf177Q52M58 125 aa10.03□□□□□ -0.8
SDC4-201ENST00000372733 Q5VV11 94 aa10.02□□□□□ -0.81
SDC4-201ENST00000372733 V9GYY9 64 aa10.02□□□□□ -0.81
SDC4-201ENST00000372733 COL7A1Q02388 2944 aa10.01□□□□□ -0.81
SDC4-201ENST00000372733 A8MU10 97 aa10.01□□□□□ -0.81
SDC4-201ENST00000372733 TENM2Q9NT68 2774 aa9.99□□□□□ -0.81
SDC4-201ENST00000372733 Q8N9P0 234 aaPredicted RBP9.99□□□□□ -0.81
SDC4-201ENST00000372733 IGLV9-49A0A0B4J1Y8 123 aa9.98□□□□□ -0.81
SDC4-201ENST00000372733 KRTAP13-1Q8IUC0 172 aa9.98□□□□□ -0.81
SDC4-201ENST00000372733 APLNQ9ULZ1 77 aa9.98□□□□□ -0.81
SDC4-201ENST00000372733 Q96NJ1 140 aa9.96□□□□□ -0.81
SDC4-201ENST00000372733 DNAH7Q8WXX0 4024 aa9.96□□□□□ -0.81
SDC4-201ENST00000372733 PCOTHQ58A44 107 aa9.96□□□□□ -0.82
SDC4-201ENST00000372733 COA5Q86WW8 74 aa9.95□□□□□ -0.82
SDC4-201ENST00000372733 PRR15LQ9BU68 103 aa9.95□□□□□ -0.82
SDC4-201ENST00000372733 CHKB-CPT1BH3BT56 60 aa9.93□□□□□ -0.82
SDC4-201ENST00000372733 LIMD2Q9BT23 127 aa9.92□□□□□ -0.82
SDC4-201ENST00000372733 IGLV7-46A0A075B6I9 117 aa9.91□□□□□ -0.82
SDC4-201ENST00000372733 CD164Q04900 197 aa9.91□□□□□ -0.82
SDC4-201ENST00000372733 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.91□□□□□ -0.82
SDC4-201ENST00000372733 C8orf17Q9NRJ1 99 aa9.9□□□□□ -0.82
SDC4-201ENST00000372733 PMAIP1Q13794 54 aa9.89□□□□□ -0.83
SDC4-201ENST00000372733 MOBPQ13875 183 aa9.89□□□□□ -0.83
SDC4-201ENST00000372733 ASB16-AS1Q495Z4 193 aa9.89□□□□□ -0.83
SDC4-201ENST00000372733 PLECQ15149 4684 aaKnown RBP9.89□□□□□ -0.83
SDC4-201ENST00000372733 DYNC2H1Q8NCM8 4307 aaKnown RBP9.88□□□□□ -0.83
SDC4-201ENST00000372733 IGHV6-1A0A0B4J1U7 121 aa9.87□□□□□ -0.83
SDC4-201ENST00000372733 NBDYA0A0U1RRE5 68 aa9.87□□□□□ -0.83
SDC4-201ENST00000372733 NDUFS5O43920 106 aa9.86□□□□□ -0.83
SDC4-201ENST00000372733 Q6ZRN7 208 aaPredicted RBP9.86□□□□□ -0.83
SDC4-201ENST00000372733 SPACA4Q8TDM5 124 aa9.86□□□□□ -0.83
SDC4-201ENST00000372733 TP53AIP1Q9HCN2 124 aa9.86□□□□□ -0.83
SDC4-201ENST00000372733 A0A1B0GVX0 72 aa9.83□□□□□ -0.84
SDC4-201ENST00000372733 LINC00483Q53H64 154 aa9.83□□□□□ -0.84
SDC4-201ENST00000372733 Q6ZR54 194 aa9.83□□□□□ -0.84
SDC4-201ENST00000372733 ANAPC11Q9NYG5 84 aa9.83□□□□□ -0.84
SDC4-201ENST00000372733 SEC61GP60059 68 aa9.82□□□□□ -0.84
SDC4-201ENST00000372733 Q75L30 129 aa9.82□□□□□ -0.84
SDC4-201ENST00000372733 WWC2-AS2Q96NR7 200 aa9.81□□□□□ -0.84
SDC4-201ENST00000372733 A0A087X002 238 aa9.81□□□□□ -0.84
SDC4-201ENST00000372733 NOTCH2NLQ7Z3S9 236 aa9.81□□□□□ -0.84
SDC4-201ENST00000372733 MDFIQ99750 246 aa9.81□□□□□ -0.84
SDC4-201ENST00000372733 LOC101927531A0A1B0GV80 90 aa9.8□□□□□ -0.84
SDC4-201ENST00000372733 A6NED7 52 aa9.79□□□□□ -0.84
SDC4-201ENST00000372733 LCA10Q71F78 164 aa9.79□□□□□ -0.84
SDC4-201ENST00000372733 CDK2AP2O75956 126 aa9.79□□□□□ -0.84
SDC4-201ENST00000372733 SPAG11AQ6PDA7 123 aa9.78□□□□□ -0.84
SDC4-201ENST00000372733 DNAH8Q96JB1 4490 aa9.78□□□□□ -0.84
SDC4-201ENST00000372733 MRPL34Q9BQ48 92 aaKnown RBP9.78□□□□□ -0.84
SDC4-201ENST00000372733 SPTSSBQ8NFR3 76 aa9.77□□□□□ -0.85
SDC4-201ENST00000372733 PSORS1C2Q9UIG4 136 aa9.77□□□□□ -0.85
SDC4-201ENST00000372733 FRAS1Q86XX4 4008 aa9.77□□□□□ -0.85
SDC4-201ENST00000372733 ZNF706Q9Y5V0 76 aaPredicted RBP9.76□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 72.4 ms