RNA–Protein interactions for RNA: ENST00000372146.4

GTF3C4-201, Transcript of general transcription factor IIIC subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GTF3C4, Length 9,043 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3C4-201ENST00000372146 CHD6Q8TD26 2715 aa9.62□□□□□ -0.87
GTF3C4-201ENST00000372146 R4GN34 69 aa9.62□□□□□ -0.87
GTF3C4-201ENST00000372146 RPL37P61927 97 aaKnown RBP9.61□□□□□ -0.87
GTF3C4-201ENST00000372146 CHD7Q9P2D1 2997 aa9.59□□□□□ -0.87
GTF3C4-201ENST00000372146 ASB16-AS1Q495Z4 193 aa9.58□□□□□ -0.88
GTF3C4-201ENST00000372146 A0A0C4DFX4 3053 aa9.58□□□□□ -0.88
GTF3C4-201ENST00000372146 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.57□□□□□ -0.88
GTF3C4-201ENST00000372146 MMP24-AS1A0A0U1RRL7 71 aa9.55□□□□□ -0.88
GTF3C4-201ENST00000372146 BRCA2P51587 3418 aa9.55□□□□□ -0.88
GTF3C4-201ENST00000372146 Q5W150 140 aa9.54□□□□□ -0.88
GTF3C4-201ENST00000372146 ZCCHC13Q8WW36 166 aaKnown RBP9.54□□□□□ -0.88
GTF3C4-201ENST00000372146 HELZ2Q9BYK8 2649 aaKnown RBP9.54□□□□□ -0.88
GTF3C4-201ENST00000372146 LINC00612Q8N6U2 182 aa9.54□□□□□ -0.88
GTF3C4-201ENST00000372146 CASC10Q5T4H9 136 aa9.53□□□□□ -0.88
GTF3C4-201ENST00000372146 WWC2-AS2Q96NR7 200 aa9.52□□□□□ -0.89
GTF3C4-201ENST00000372146 KRTAP10-11P60412 298 aa9.51□□□□□ -0.89
GTF3C4-201ENST00000372146 NDUFAF8A1L188 74 aa9.51□□□□□ -0.89
GTF3C4-201ENST00000372146 FLNAP21333 2647 aaKnown RBP9.51□□□□□ -0.89
GTF3C4-201ENST00000372146 ITPR3Q14573 2671 aa9.5□□□□□ -0.89
GTF3C4-201ENST00000372146 GCN1Q92616 2671 aaKnown RBP9.5□□□□□ -0.89
GTF3C4-201ENST00000372146 UNC79Q9P2D8 2635 aa9.49□□□□□ -0.89
GTF3C4-201ENST00000372146 XIRP2A4UGR9 3374 aa9.49□□□□□ -0.89
GTF3C4-201ENST00000372146 COL6A5A8TX70 2615 aa9.48□□□□□ -0.89
GTF3C4-201ENST00000372146 A0A096LNT2 108 aa9.47□□□□□ -0.89
GTF3C4-201ENST00000372146 LAMA3Q16787 3333 aa9.46□□□□□ -0.89
GTF3C4-201ENST00000372146 PLAC4Q8WY50 150 aa9.46□□□□□ -0.9
GTF3C4-201ENST00000372146 SPATA8Q6RVD6 105 aa9.46□□□□□ -0.9
GTF3C4-201ENST00000372146 KLK9Q2XQG4 91 aa9.45□□□□□ -0.9
GTF3C4-201ENST00000372146 KRTAP24-1Q3LI83 254 aa9.45□□□□□ -0.9
GTF3C4-201ENST00000372146 KRTAP25-1Q3LHN0 102 aa9.43□□□□□ -0.9
GTF3C4-201ENST00000372146 TEP1Q99973 2627 aaKnown RBP9.43□□□□□ -0.9
GTF3C4-201ENST00000372146 M0QZ58 72 aa9.42□□□□□ -0.9
GTF3C4-201ENST00000372146 C20orf166-AS1Q96NR2 134 aa9.42□□□□□ -0.9
GTF3C4-201ENST00000372146 TNP2Q05952 138 aa9.42□□□□□ -0.9
GTF3C4-201ENST00000372146 HTTP42858 3142 aa9.41□□□□□ -0.9
GTF3C4-201ENST00000372146 RANBP2P49792 3224 aaKnown RBP9.41□□□□□ -0.9
GTF3C4-201ENST00000372146 K7EIL1 84 aa9.38□□□□□ -0.91
GTF3C4-201ENST00000372146 PRUNE2Q8WUY3 3088 aa9.36□□□□□ -0.91
GTF3C4-201ENST00000372146 A6NN06 94 aa9.35□□□□□ -0.91
GTF3C4-201ENST00000372146 UTP20O75691 2785 aaKnown RBP9.35□□□□□ -0.91
GTF3C4-201ENST00000372146 Q8NDZ9 215 aa9.35□□□□□ -0.91
GTF3C4-201ENST00000372146 REV3LO60673 3130 aa9.34□□□□□ -0.91
GTF3C4-201ENST00000372146 FREM2Q5SZK8 3169 aa9.34□□□□□ -0.91
GTF3C4-201ENST00000372146 LINC00472Q9H8W2 130 aa9.33□□□□□ -0.92
GTF3C4-201ENST00000372146 ADM2Q7Z4H4 148 aa9.33□□□□□ -0.92
GTF3C4-201ENST00000372146 DSPP15924 2871 aaKnown RBP9.32□□□□□ -0.92
GTF3C4-201ENST00000372146 APCP25054 2843 aa9.32□□□□□ -0.92
GTF3C4-201ENST00000372146 DNAH14Q0VDD8 3507 aa9.31□□□□□ -0.92
GTF3C4-201ENST00000372146 SEC61BP60468 96 aaKnown RBP9.31□□□□□ -0.92
GTF3C4-201ENST00000372146 CDH23Q9H251 3354 aa9.3□□□□□ -0.92
GTF3C4-201ENST00000372146 TEX15Q9BXT5 2789 aa9.3□□□□□ -0.92
GTF3C4-201ENST00000372146 TRIOO75962 3097 aa9.27□□□□□ -0.93
GTF3C4-201ENST00000372146 ITPR2Q14571 2701 aa9.27□□□□□ -0.93
GTF3C4-201ENST00000372146 TRANK1O15050 2925 aa9.26□□□□□ -0.93
GTF3C4-201ENST00000372146 CELSR3Q9NYQ7 3312 aa9.26□□□□□ -0.93
GTF3C4-201ENST00000372146 CHD9Q3L8U1 2897 aa9.24□□□□□ -0.93
GTF3C4-201ENST00000372146 UNC80Q8N2C7 3258 aa9.23□□□□□ -0.93
GTF3C4-201ENST00000372146 Q6ZR54 194 aa9.22□□□□□ -0.93
GTF3C4-201ENST00000372146 VPS13AQ96RL7 3174 aa9.21□□□□□ -0.93
GTF3C4-201ENST00000372146 MAP1AP78559 2803 aaPredicted RBP9.2□□□□□ -0.94
GTF3C4-201ENST00000372146 KRTAP26-1Q6PEX3 210 aa9.2□□□□□ -0.94
GTF3C4-201ENST00000372146 MGAQ8IWI9 3026 aa9.19□□□□□ -0.94
GTF3C4-201ENST00000372146 KRTAP10-3P60369 221 aa9.18□□□□□ -0.94
GTF3C4-201ENST00000372146 IGSF10Q6WRI0 2623 aa9.18□□□□□ -0.94
GTF3C4-201ENST00000372146 WDFY4Q6ZS81 3184 aa9.14□□□□□ -0.95
GTF3C4-201ENST00000372146 C10orf95Q9H7T3 257 aa9.13□□□□□ -0.95
GTF3C4-201ENST00000372146 PANO1I0J062 215 aa9.13□□□□□ -0.95
GTF3C4-201ENST00000372146 SPRR1AP35321 89 aa9.12□□□□□ -0.95
GTF3C4-201ENST00000372146 A8MU10 97 aa9.12□□□□□ -0.95
GTF3C4-201ENST00000372146 NBEAL2Q6ZNJ1 2754 aa9.09□□□□□ -0.95
GTF3C4-201ENST00000372146 ITPR1Q14643 2758 aa9.07□□□□□ -0.96
GTF3C4-201ENST00000372146 FLNBO75369 2602 aaKnown RBP9.07□□□□□ -0.96
GTF3C4-201ENST00000372146 PLAC8Q9NZF1 115 aa9.07□□□□□ -0.96
GTF3C4-201ENST00000372146 LAMA1P25391 3075 aa9.06□□□□□ -0.96
GTF3C4-201ENST00000372146 LRBAP50851 2863 aa9.05□□□□□ -0.96
GTF3C4-201ENST00000372146 A8MUU9 505 aa9.03□□□□□ -0.96
GTF3C4-201ENST00000372146 VCANP13611 3396 aa9.02□□□□□ -0.97
GTF3C4-201ENST00000372146 KMT2BQ9UMN6 2715 aaPredicted RBP9.02□□□□□ -0.97
GTF3C4-201ENST00000372146 UBR5O95071 2799 aaPredicted RBP9□□□□□ -0.97
GTF3C4-201ENST00000372146 FRYQ5TBA9 3013 aa9□□□□□ -0.97
GTF3C4-201ENST00000372146 SPRR1BP22528 89 aa8.99□□□□□ -0.97
GTF3C4-201ENST00000372146 SZT2Q5T011 3432 aa8.99□□□□□ -0.97
GTF3C4-201ENST00000372146 SETXQ7Z333 2677 aaKnown RBP8.97□□□□□ -0.97
GTF3C4-201ENST00000372146 ZNF292O60281 2723 aa8.96□□□□□ -0.97
GTF3C4-201ENST00000372146 KRTAP1-3Q8IUG1 177 aa8.95□□□□□ -0.98
GTF3C4-201ENST00000372146 KALRNO60229 2985 aa8.95□□□□□ -0.98
GTF3C4-201ENST00000372146 KRTAP29-1A8MX34 341 aaPredicted RBP8.94□□□□□ -0.98
GTF3C4-201ENST00000372146 KRTAP1-1Q07627 177 aa8.86□□□□□ -0.99
GTF3C4-201ENST00000372146 KRTAP11-1Q8IUC1 163 aa8.84□□□□□ -1
GTF3C4-201ENST00000372146 ASH1LQ9NR48 2969 aaKnown RBP8.82□□□□□ -1
GTF3C4-201ENST00000372146 COL6A3P12111 3177 aa8.82□□□□□ -1
GTF3C4-201ENST00000372146 KRTAP4-16G5E9R7 235 aaPredicted RBP8.82□□□□□ -1
GTF3C4-201ENST00000372146 A0A087X002 238 aa8.81□□□□□ -1
GTF3C4-201ENST00000372146 NOTCH2NLQ7Z3S9 236 aa8.81□□□□□ -1
GTF3C4-201ENST00000372146 SPTBN5Q9NRC6 3674 aaKnown RBP8.8□□□□□ -1
GTF3C4-201ENST00000372146 TNP1P09430 55 aa8.79□□□□□ -1
GTF3C4-201ENST00000372146 Q5VSD8 79 aa8.79□□□□□ -1
GTF3C4-201ENST00000372146 FRYLO94915 3013 aa8.77□□□□□ -1.01
GTF3C4-201ENST00000372146 COL12A1Q99715 3063 aa8.74□□□□□ -1.01
GTF3C4-201ENST00000372146 BOD1L1Q8NFC6 3051 aa8.73□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 64.7 ms