RNA–Protein interactions for RNA: ENST00000359759.8

COL18A1-203, Transcript of collagen type XVIII alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL18A1, Length 6,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-203ENST00000359759 KRTAP26-1Q6PEX3 210 aa9.65□□□□□ -0.87
COL18A1-203ENST00000359759 ADM2Q7Z4H4 148 aa9.6□□□□□ -0.87
COL18A1-203ENST00000359759 DNAH12Q6ZR08 3092 aa9.6□□□□□ -0.87
COL18A1-203ENST00000359759 SPRR1BP22528 89 aa9.53□□□□□ -0.88
COL18A1-203ENST00000359759 MGAM2Q2M2H8 2515 aa9.53□□□□□ -0.88
COL18A1-203ENST00000359759 Q5VSD8 79 aa9.53□□□□□ -0.88
COL18A1-203ENST00000359759 SEC61BP60468 96 aaKnown RBP9.52□□□□□ -0.89
COL18A1-203ENST00000359759 KRTAP1-5Q9BYS1 174 aa9.51□□□□□ -0.89
COL18A1-203ENST00000359759 USP24Q9UPU5 2620 aa9.51□□□□□ -0.89
COL18A1-203ENST00000359759 CEP350Q5VT06 3117 aa9.5□□□□□ -0.89
COL18A1-203ENST00000359759 Q6ZR54 194 aa9.5□□□□□ -0.89
COL18A1-203ENST00000359759 PLAC4Q8WY50 150 aa9.49□□□□□ -0.89
COL18A1-203ENST00000359759 BPTFQ12830 3046 aa9.49□□□□□ -0.89
COL18A1-203ENST00000359759 HELZ2Q9BYK8 2649 aaKnown RBP9.46□□□□□ -0.9
COL18A1-203ENST00000359759 KRTAP10-1P60331 282 aa9.46□□□□□ -0.9
COL18A1-203ENST00000359759 KRTAP16-1A8MUX0 517 aa9.45□□□□□ -0.9
COL18A1-203ENST00000359759 KRTAP10-2P60368 255 aa9.44□□□□□ -0.9
COL18A1-203ENST00000359759 C5orf42Q9H799 3197 aa9.42□□□□□ -0.9
COL18A1-203ENST00000359759 A8MU10 97 aa9.39□□□□□ -0.91
COL18A1-203ENST00000359759 C20orf166-AS1Q96NR2 134 aa9.38□□□□□ -0.91
COL18A1-203ENST00000359759 PANO1I0J062 215 aa9.36□□□□□ -0.91
COL18A1-203ENST00000359759 A0A087X002 238 aa9.35□□□□□ -0.91
COL18A1-203ENST00000359759 NOTCH2NLQ7Z3S9 236 aa9.35□□□□□ -0.91
COL18A1-203ENST00000359759 KRTAP25-1Q3LHN0 102 aa9.34□□□□□ -0.91
COL18A1-203ENST00000359759 KRTAP29-1A8MX34 341 aaPredicted RBP9.32□□□□□ -0.92
COL18A1-203ENST00000359759 PCNTO95613 3336 aa9.31□□□□□ -0.92
COL18A1-203ENST00000359759 ITPR3Q14573 2671 aa9.31□□□□□ -0.92
COL18A1-203ENST00000359759 LCE6AA0A183 80 aa9.31□□□□□ -0.92
COL18A1-203ENST00000359759 ASB16-AS1Q495Z4 193 aa9.31□□□□□ -0.92
COL18A1-203ENST00000359759 FLNAP21333 2647 aaKnown RBP9.3□□□□□ -0.92
COL18A1-203ENST00000359759 CFAP46Q8IYW2 2715 aa9.29□□□□□ -0.92
COL18A1-203ENST00000359759 A6NN06 94 aa9.26□□□□□ -0.93
COL18A1-203ENST00000359759 MAST4O15021 2626 aa9.26□□□□□ -0.93
COL18A1-203ENST00000359759 NDUFAF8A1L188 74 aa9.26□□□□□ -0.93
COL18A1-203ENST00000359759 KRTAP4-16G5E9R7 235 aaPredicted RBP9.25□□□□□ -0.93
COL18A1-203ENST00000359759 ATRQ13535 2644 aa9.24□□□□□ -0.93
COL18A1-203ENST00000359759 PRRC2CQ9Y520 2896 aaKnown RBP9.23□□□□□ -0.93
COL18A1-203ENST00000359759 A8MUU9 505 aa9.2□□□□□ -0.94
COL18A1-203ENST00000359759 BAHCC1Q9P281 2608 aa9.18□□□□□ -0.94
COL18A1-203ENST00000359759 KRTAP11-1Q8IUC1 163 aa9.14□□□□□ -0.95
COL18A1-203ENST00000359759 FLG2Q5D862 2391 aaPredicted RBP9.12□□□□□ -0.95
COL18A1-203ENST00000359759 CHD7Q9P2D1 2997 aa9.11□□□□□ -0.95
COL18A1-203ENST00000359759 SETXQ7Z333 2677 aaKnown RBP9.1□□□□□ -0.95
COL18A1-203ENST00000359759 C10orf95Q9H7T3 257 aa9.1□□□□□ -0.95
COL18A1-203ENST00000359759 TEP1Q99973 2627 aaKnown RBP9.09□□□□□ -0.95
COL18A1-203ENST00000359759 MKI67P46013 3256 aaKnown RBP9.09□□□□□ -0.95
COL18A1-203ENST00000359759 LAMA3Q16787 3333 aa9.05□□□□□ -0.96
COL18A1-203ENST00000359759 RANBP2P49792 3224 aaKnown RBP9.02□□□□□ -0.96
COL18A1-203ENST00000359759 BRCA2P51587 3418 aa8.97□□□□□ -0.97
COL18A1-203ENST00000359759 KRTAP7-1Q8IUC3 87 aa8.95□□□□□ -0.98
COL18A1-203ENST00000359759 TEX15Q9BXT5 2789 aa8.95□□□□□ -0.98
COL18A1-203ENST00000359759 TNP1P09430 55 aa8.94□□□□□ -0.98
COL18A1-203ENST00000359759 KRTAP13-2Q52LG2 175 aa8.92□□□□□ -0.98
COL18A1-203ENST00000359759 PRUNE2Q8WUY3 3088 aa8.92□□□□□ -0.98
COL18A1-203ENST00000359759 CENPEQ02224 2701 aa8.92□□□□□ -0.98
COL18A1-203ENST00000359759 HTTP42858 3142 aa8.91□□□□□ -0.98
COL18A1-203ENST00000359759 CFAP54Q96N23 3096 aa8.91□□□□□ -0.98
COL18A1-203ENST00000359759 MGAQ8IWI9 3026 aa8.88□□□□□ -0.99
COL18A1-203ENST00000359759 DMBT1Q9UGM3 2413 aaPredicted RBP8.88□□□□□ -0.99
COL18A1-203ENST00000359759 STAB1Q9NY15 2570 aa8.87□□□□□ -0.99
COL18A1-203ENST00000359759 RPS29P62273 56 aaKnown RBP8.87□□□□□ -0.99
COL18A1-203ENST00000359759 CHD9Q3L8U1 2897 aa8.83□□□□□ -1
COL18A1-203ENST00000359759 Q6ZRN7 208 aaPredicted RBP8.82□□□□□ -1
COL18A1-203ENST00000359759 XIRP2A4UGR9 3374 aa8.78□□□□□ -1
COL18A1-203ENST00000359759 A0A0C4DFX4 3053 aa8.78□□□□□ -1
COL18A1-203ENST00000359759 NBEAL1Q6ZS30 2694 aa8.77□□□□□ -1.01
COL18A1-203ENST00000359759 COL6A5A8TX70 2615 aa8.76□□□□□ -1.01
COL18A1-203ENST00000359759 KRTAP13-1Q8IUC0 172 aa8.76□□□□□ -1.01
COL18A1-203ENST00000359759 AKAP13Q12802 2813 aa8.76□□□□□ -1.01
COL18A1-203ENST00000359759 WDFY4Q6ZS81 3184 aa8.75□□□□□ -1.01
COL18A1-203ENST00000359759 ZNF292O60281 2723 aa8.74□□□□□ -1.01
COL18A1-203ENST00000359759 CHD6Q8TD26 2715 aa8.74□□□□□ -1.01
COL18A1-203ENST00000359759 KRTAP21-3Q3LHN1 58 aa8.74□□□□□ -1.01
COL18A1-203ENST00000359759 A0A1B0GVY2 172 aa8.72□□□□□ -1.01
COL18A1-203ENST00000359759 KRTAP10-8P60410 259 aa8.71□□□□□ -1.01
COL18A1-203ENST00000359759 CDH23Q9H251 3354 aa8.69□□□□□ -1.02
COL18A1-203ENST00000359759 DSPP15924 2871 aaKnown RBP8.67□□□□□ -1.02
COL18A1-203ENST00000359759 IGSF10Q6WRI0 2623 aa8.65□□□□□ -1.03
COL18A1-203ENST00000359759 GCN1Q92616 2671 aaKnown RBP8.62□□□□□ -1.03
COL18A1-203ENST00000359759 UNC79Q9P2D8 2635 aa8.62□□□□□ -1.03
COL18A1-203ENST00000359759 UNC80Q8N2C7 3258 aa8.61□□□□□ -1.03
COL18A1-203ENST00000359759 TRANK1O15050 2925 aa8.6□□□□□ -1.03
COL18A1-203ENST00000359759 TRIOO75962 3097 aa8.6□□□□□ -1.03
COL18A1-203ENST00000359759 FREM2Q5SZK8 3169 aa8.59□□□□□ -1.03
COL18A1-203ENST00000359759 H0YAA0 97 aa8.58□□□□□ -1.04
COL18A1-203ENST00000359759 LAMA2P24043 3122 aaKnown RBP8.57□□□□□ -1.04
COL18A1-203ENST00000359759 FRYQ5TBA9 3013 aa8.56□□□□□ -1.04
COL18A1-203ENST00000359759 PP632Q6XCG6 107 aa8.56□□□□□ -1.04
COL18A1-203ENST00000359759 ITPR2Q14571 2701 aa8.52□□□□□ -1.05
COL18A1-203ENST00000359759 P0C880 135 aa8.52□□□□□ -1.05
COL18A1-203ENST00000359759 CRYBG3Q68DQ2 2970 aa8.51□□□□□ -1.05
COL18A1-203ENST00000359759 CELSR3Q9NYQ7 3312 aa8.51□□□□□ -1.05
COL18A1-203ENST00000359759 NBEAL2Q6ZNJ1 2754 aa8.5□□□□□ -1.05
COL18A1-203ENST00000359759 SZT2Q5T011 3432 aa8.49□□□□□ -1.05
COL18A1-203ENST00000359759 STAB2Q8WWQ8 2551 aa8.48□□□□□ -1.05
COL18A1-203ENST00000359759 NOTCH1P46531 2555 aa8.48□□□□□ -1.05
COL18A1-203ENST00000359759 REV3LO60673 3130 aa8.48□□□□□ -1.05
COL18A1-203ENST00000359759 XP32Q5T750 250 aa8.47□□□□□ -1.05
COL18A1-203ENST00000359759 COL6A3P12111 3177 aa8.38□□□□□ -1.07
COL18A1-203ENST00000359759 VPS13AQ96RL7 3174 aa8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms