RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 LCE6AA0A183 80 aa7.91□□□□□ -1.14
COL6A3-203ENST00000353578 ITPR1Q14643 2758 aa7.9□□□□□ -1.14
COL6A3-203ENST00000353578 KRTAP25-1Q3LHN0 102 aa7.89□□□□□ -1.15
COL6A3-203ENST00000353578 BAHCC1Q9P281 2608 aa7.88□□□□□ -1.15
COL6A3-203ENST00000353578 Q5W150 140 aa7.86□□□□□ -1.15
COL6A3-203ENST00000353578 APCP25054 2843 aa7.86□□□□□ -1.15
COL6A3-203ENST00000353578 ZNF575Q86XF7 245 aa7.86□□□□□ -1.15
COL6A3-203ENST00000353578 PSORS1C2Q9UIG4 136 aa7.85□□□□□ -1.15
COL6A3-203ENST00000353578 H1FX-AS1Q4G0G2 97 aa7.85□□□□□ -1.15
COL6A3-203ENST00000353578 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.84□□□□□ -1.15
COL6A3-203ENST00000353578 TEP1Q99973 2627 aaKnown RBP7.83□□□□□ -1.16
COL6A3-203ENST00000353578 UTP20O75691 2785 aaKnown RBP7.82□□□□□ -1.16
COL6A3-203ENST00000353578 S4R3F8 94 aa7.8□□□□□ -1.16
COL6A3-203ENST00000353578 A0A087WTM6 91 aa7.79□□□□□ -1.16
COL6A3-203ENST00000353578 ZNF292O60281 2723 aa7.78□□□□□ -1.16
COL6A3-203ENST00000353578 NSD1Q96L73 2696 aaPredicted RBP7.78□□□□□ -1.16
COL6A3-203ENST00000353578 SETXQ7Z333 2677 aaKnown RBP7.76□□□□□ -1.17
COL6A3-203ENST00000353578 A0A1W2PNN7 141 aa7.75□□□□□ -1.17
COL6A3-203ENST00000353578 NOTCH2NLQ7Z3S9 236 aa7.75□□□□□ -1.17
COL6A3-203ENST00000353578 A0A0G2JQZ4 141 aa7.74□□□□□ -1.17
COL6A3-203ENST00000353578 KRTAP10-9P60411 292 aa7.74□□□□□ -1.17
COL6A3-203ENST00000353578 KRTAP29-1A8MX34 341 aaPredicted RBP7.74□□□□□ -1.17
COL6A3-203ENST00000353578 C9orf92A6NGG3 77 aa7.73□□□□□ -1.17
COL6A3-203ENST00000353578 ITPR2Q14571 2701 aa7.73□□□□□ -1.17
COL6A3-203ENST00000353578 R4GN34 69 aa7.68□□□□□ -1.18
COL6A3-203ENST00000353578 ANAPC11Q9NYG5 84 aa7.68□□□□□ -1.18
COL6A3-203ENST00000353578 J3QL48 77 aa7.68□□□□□ -1.18
COL6A3-203ENST00000353578 IGSF10Q6WRI0 2623 aa7.66□□□□□ -1.18
COL6A3-203ENST00000353578 NBEAL2Q6ZNJ1 2754 aa7.66□□□□□ -1.18
COL6A3-203ENST00000353578 KRTAP26-1Q6PEX3 210 aa7.65□□□□□ -1.19
COL6A3-203ENST00000353578 NDUFAF8A1L188 74 aa7.63□□□□□ -1.19
COL6A3-203ENST00000353578 Q6ZSA8 131 aa7.63□□□□□ -1.19
COL6A3-203ENST00000353578 UBR5O95071 2799 aaPredicted RBP7.62□□□□□ -1.19
COL6A3-203ENST00000353578 M0QZ58 72 aa7.62□□□□□ -1.19
COL6A3-203ENST00000353578 PLAC8Q9NZF1 115 aa7.62□□□□□ -1.19
COL6A3-203ENST00000353578 PANO1I0J062 215 aa7.61□□□□□ -1.19
COL6A3-203ENST00000353578 WWC2-AS2Q96NR7 200 aa7.61□□□□□ -1.19
COL6A3-203ENST00000353578 KRTAP4-16G5E9R7 235 aaPredicted RBP7.56□□□□□ -1.2
COL6A3-203ENST00000353578 PP632Q6XCG6 107 aa7.55□□□□□ -1.2
COL6A3-203ENST00000353578 Q8NDZ9 215 aa7.53□□□□□ -1.2
COL6A3-203ENST00000353578 C20orf166-AS1Q96NR2 134 aa7.52□□□□□ -1.21
COL6A3-203ENST00000353578 RPS29P62273 56 aaKnown RBP7.52□□□□□ -1.21
COL6A3-203ENST00000353578 PLAC4Q8WY50 150 aa7.52□□□□□ -1.21
COL6A3-203ENST00000353578 KRTAP10-11P60412 298 aa7.48□□□□□ -1.21
COL6A3-203ENST00000353578 LRBAP50851 2863 aa7.48□□□□□ -1.21
COL6A3-203ENST00000353578 K7EIL1 84 aa7.47□□□□□ -1.21
COL6A3-203ENST00000353578 A8MUU9 505 aa7.46□□□□□ -1.22
COL6A3-203ENST00000353578 CASC10Q5T4H9 136 aa7.45□□□□□ -1.22
COL6A3-203ENST00000353578 KRTAP11-1Q8IUC1 163 aa7.44□□□□□ -1.22
COL6A3-203ENST00000353578 KRTAP24-1Q3LI83 254 aa7.41□□□□□ -1.22
COL6A3-203ENST00000353578 NIPBLQ6KC79 2804 aaeCLIP7.37□□□□□ -1.23
COL6A3-203ENST00000353578 SMR3BP02814 79 aaPredicted RBP7.34□□□□□ -1.23
COL6A3-203ENST00000353578 ADM2Q7Z4H4 148 aa7.34□□□□□ -1.23
COL6A3-203ENST00000353578 TRANK1O15050 2925 aa7.26□□□□□ -1.25
COL6A3-203ENST00000353578 DSPP15924 2871 aaKnown RBP7.26□□□□□ -1.25
COL6A3-203ENST00000353578 HIVEP1P15822 2718 aa7.24□□□□□ -1.25
COL6A3-203ENST00000353578 M0R2T5 61 aa7.24□□□□□ -1.25
COL6A3-203ENST00000353578 EP400Q96L91 3159 aa7.23□□□□□ -1.25
COL6A3-203ENST00000353578 TNP1P09430 55 aa7.23□□□□□ -1.25
COL6A3-203ENST00000353578 CHD9Q3L8U1 2897 aa7.23□□□□□ -1.25
COL6A3-203ENST00000353578 CEP350Q5VT06 3117 aa7.23□□□□□ -1.25
COL6A3-203ENST00000353578 TENM3Q9P273 2699 aa7.22□□□□□ -1.25
COL6A3-203ENST00000353578 FLNCQ14315 2725 aa7.21□□□□□ -1.25
COL6A3-203ENST00000353578 KRTAP10-3P60369 221 aa7.21□□□□□ -1.25
COL6A3-203ENST00000353578 A0A0C4DFX4 3053 aa7.21□□□□□ -1.26
COL6A3-203ENST00000353578 TGP01266 2768 aa7.2□□□□□ -1.26
COL6A3-203ENST00000353578 A8MU10 97 aa7.19□□□□□ -1.26
COL6A3-203ENST00000353578 CFAP54Q96N23 3096 aa7.18□□□□□ -1.26
COL6A3-203ENST00000353578 P0C880 135 aa7.18□□□□□ -1.26
COL6A3-203ENST00000353578 KALRNO60229 2985 aa7.18□□□□□ -1.26
COL6A3-203ENST00000353578 DNAH12Q6ZR08 3092 aa7.13□□□□□ -1.27
COL6A3-203ENST00000353578 FRYLO94915 3013 aa7.12□□□□□ -1.27
COL6A3-203ENST00000353578 C10orf95Q9H7T3 257 aa7.09□□□□□ -1.27
COL6A3-203ENST00000353578 NF1P21359 2839 aa7.08□□□□□ -1.28
COL6A3-203ENST00000353578 KRTAP1-3Q8IUG1 177 aa7.08□□□□□ -1.28
COL6A3-203ENST00000353578 KRTAP1-1Q07627 177 aa7.07□□□□□ -1.28
COL6A3-203ENST00000353578 SRCAPQ6ZRS2 3230 aa7.07□□□□□ -1.28
COL6A3-203ENST00000353578 KRTAP13-1Q8IUC0 172 aa7.06□□□□□ -1.28
COL6A3-203ENST00000353578 PCNTO95613 3336 aa7.06□□□□□ -1.28
COL6A3-203ENST00000353578 FRYQ5TBA9 3013 aa7.05□□□□□ -1.28
COL6A3-203ENST00000353578 PDZD2O15018 2839 aa7.05□□□□□ -1.28
COL6A3-203ENST00000353578 H0YAA0 97 aa7.02□□□□□ -1.29
COL6A3-203ENST00000353578 TENM1Q9UKZ4 2725 aa7.02□□□□□ -1.29
COL6A3-203ENST00000353578 KRTAP1-5Q9BYS1 174 aa7□□□□□ -1.29
COL6A3-203ENST00000353578 MGAQ8IWI9 3026 aa7□□□□□ -1.29
COL6A3-203ENST00000353578 Q6ZRN7 208 aaPredicted RBP6.99□□□□□ -1.29
COL6A3-203ENST00000353578 ASH1LQ9NR48 2969 aaKnown RBP6.98□□□□□ -1.29
COL6A3-203ENST00000353578 SRRM2Q9UQ35 2752 aaKnown RBP6.98□□□□□ -1.29
COL6A3-203ENST00000353578 CHD7Q9P2D1 2997 aa6.94□□□□□ -1.3
COL6A3-203ENST00000353578 TACC2O95359 2948 aa6.94□□□□□ -1.3
COL6A3-203ENST00000353578 NBEAQ8NFP9 2946 aa6.92□□□□□ -1.3
COL6A3-203ENST00000353578 CELSR2Q9HCU4 2923 aa6.91□□□□□ -1.3
COL6A3-203ENST00000353578 C5orf42Q9H799 3197 aa6.83□□□□□ -1.32
COL6A3-203ENST00000353578 Q5VSD8 79 aa6.82□□□□□ -1.32
COL6A3-203ENST00000353578 KRTAP10-1P60331 282 aa6.8□□□□□ -1.32
COL6A3-203ENST00000353578 LAMA2P24043 3122 aaKnown RBP6.8□□□□□ -1.32
COL6A3-203ENST00000353578 KRTAP7-1Q8IUC3 87 aa6.78□□□□□ -1.32
COL6A3-203ENST00000353578 INE1O15225 51 aa6.77□□□□□ -1.33
COL6A3-203ENST00000353578 KRTAP13-2Q52LG2 175 aa6.77□□□□□ -1.33
COL6A3-203ENST00000353578 ZANQ9Y493 2812 aa6.76□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms