RNA–Protein interactions for RNA: ENST00000335551.11

CSMD1-201, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 1 (best)

Gene CSMD1, Length 12,134 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-201ENST00000335551 CNBPP62633 177 aaKnown RBP3.97□□□□□ -1.77
CSMD1-201ENST00000335551 LRBAP50851 2863 aa3.96□□□□□ -1.77
CSMD1-201ENST00000335551 Q6ZSA8 131 aa3.96□□□□□ -1.78
CSMD1-201ENST00000335551 A0A0G2JQZ4 141 aa3.96□□□□□ -1.78
CSMD1-201ENST00000335551 A0A1W2PNN7 141 aa3.96□□□□□ -1.78
CSMD1-201ENST00000335551 TRANK1O15050 2925 aa3.96□□□□□ -1.78
CSMD1-201ENST00000335551 IGLV7-43P04211 117 aa3.96□□□□□ -1.78
CSMD1-201ENST00000335551 ROMO1P60602 79 aa3.95□□□□□ -1.78
CSMD1-201ENST00000335551 CEP350Q5VT06 3117 aa3.94□□□□□ -1.78
CSMD1-201ENST00000335551 A0A0C4DFX4 3053 aa3.94□□□□□ -1.78
CSMD1-201ENST00000335551 TNP2Q05952 138 aa3.93□□□□□ -1.78
CSMD1-201ENST00000335551 PSORS1C2Q9UIG4 136 aa3.93□□□□□ -1.78
CSMD1-201ENST00000335551 S4R3F8 94 aa3.93□□□□□ -1.78
CSMD1-201ENST00000335551 C19orf73Q9NVV2 129 aa3.92□□□□□ -1.78
CSMD1-201ENST00000335551 LINC00612Q8N6U2 182 aa3.92□□□□□ -1.78
CSMD1-201ENST00000335551 GIG44P09565 113 aaPredicted RBP3.92□□□□□ -1.78
CSMD1-201ENST00000335551 CHD9Q3L8U1 2897 aa3.91□□□□□ -1.78
CSMD1-201ENST00000335551 KRTAP24-1Q3LI83 254 aa3.91□□□□□ -1.78
CSMD1-201ENST00000335551 DSPP15924 2871 aaKnown RBP3.91□□□□□ -1.78
CSMD1-201ENST00000335551 A0A087WTM6 91 aa3.9□□□□□ -1.78
CSMD1-201ENST00000335551 RPL37P61927 97 aaKnown RBP3.9□□□□□ -1.79
CSMD1-201ENST00000335551 ANAPC11Q9NYG5 84 aa3.9□□□□□ -1.79
CSMD1-201ENST00000335551 ZCCHC13Q8WW36 166 aaKnown RBP3.9□□□□□ -1.79
CSMD1-201ENST00000335551 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP3.9□□□□□ -1.79
CSMD1-201ENST00000335551 CYSTM1Q9H1C7 97 aa3.89□□□□□ -1.79
CSMD1-201ENST00000335551 SEC61BP60468 96 aaKnown RBP3.89□□□□□ -1.79
CSMD1-201ENST00000335551 PLAC4Q8WY50 150 aa3.89□□□□□ -1.79
CSMD1-201ENST00000335551 MMP24-AS1A0A0U1RRL7 71 aa3.88□□□□□ -1.79
CSMD1-201ENST00000335551 Q5W150 140 aa3.87□□□□□ -1.79
CSMD1-201ENST00000335551 R4GN34 69 aa3.85□□□□□ -1.79
CSMD1-201ENST00000335551 H1FX-AS1Q4G0G2 97 aa3.85□□□□□ -1.79
CSMD1-201ENST00000335551 NF1P21359 2839 aa3.84□□□□□ -1.79
CSMD1-201ENST00000335551 A0A096LNT2 108 aa3.84□□□□□ -1.79
CSMD1-201ENST00000335551 FLNCQ14315 2725 aa3.84□□□□□ -1.79
CSMD1-201ENST00000335551 KALRNO60229 2985 aa3.83□□□□□ -1.8
CSMD1-201ENST00000335551 OXTP01178 125 aa3.83□□□□□ -1.8
CSMD1-201ENST00000335551 TENM3Q9P273 2699 aa3.83□□□□□ -1.8
CSMD1-201ENST00000335551 CFAP54Q96N23 3096 aa3.83□□□□□ -1.8
CSMD1-201ENST00000335551 K7EIL1 84 aa3.82□□□□□ -1.8
CSMD1-201ENST00000335551 LINC00472Q9H8W2 130 aa3.81□□□□□ -1.8
CSMD1-201ENST00000335551 KRTAP10-11P60412 298 aa3.81□□□□□ -1.8
CSMD1-201ENST00000335551 Q5VSD8 79 aa3.81□□□□□ -1.8
CSMD1-201ENST00000335551 Q6ZR54 194 aa3.8□□□□□ -1.8
CSMD1-201ENST00000335551 SMR3BP02814 79 aaPredicted RBP3.8□□□□□ -1.8
CSMD1-201ENST00000335551 MGAQ8IWI9 3026 aa3.8□□□□□ -1.8
CSMD1-201ENST00000335551 HIVEP1P15822 2718 aa3.79□□□□□ -1.8
CSMD1-201ENST00000335551 TENM1Q9UKZ4 2725 aa3.79□□□□□ -1.8
CSMD1-201ENST00000335551 SPATA8Q6RVD6 105 aa3.79□□□□□ -1.8
CSMD1-201ENST00000335551 A6NN06 94 aa3.79□□□□□ -1.8
CSMD1-201ENST00000335551 KRTAP25-1Q3LHN0 102 aa3.79□□□□□ -1.8
CSMD1-201ENST00000335551 CHD7Q9P2D1 2997 aa3.79□□□□□ -1.8
CSMD1-201ENST00000335551 SRCAPQ6ZRS2 3230 aa3.79□□□□□ -1.8
CSMD1-201ENST00000335551 CASC10Q5T4H9 136 aa3.78□□□□□ -1.8
CSMD1-201ENST00000335551 CELSR2Q9HCU4 2923 aa3.78□□□□□ -1.8
CSMD1-201ENST00000335551 SPRR1AP35321 89 aa3.77□□□□□ -1.81
CSMD1-201ENST00000335551 M0QZ58 72 aa3.77□□□□□ -1.81
CSMD1-201ENST00000335551 NDUFAF8A1L188 74 aa3.76□□□□□ -1.81
CSMD1-201ENST00000335551 A0A087X002 238 aa3.76□□□□□ -1.81
CSMD1-201ENST00000335551 NIPBLQ6KC79 2804 aaeCLIP3.76□□□□□ -1.81
CSMD1-201ENST00000335551 SPRR1BP22528 89 aa3.76□□□□□ -1.81
CSMD1-201ENST00000335551 PDZD2O15018 2839 aa3.75□□□□□ -1.81
CSMD1-201ENST00000335551 C5orf42Q9H799 3197 aa3.75□□□□□ -1.81
CSMD1-201ENST00000335551 FRYLO94915 3013 aa3.75□□□□□ -1.81
CSMD1-201ENST00000335551 PANO1I0J062 215 aa3.75□□□□□ -1.81
CSMD1-201ENST00000335551 ASH1LQ9NR48 2969 aaKnown RBP3.74□□□□□ -1.81
CSMD1-201ENST00000335551 GOLGB1Q14789 3259 aaKnown RBP3.74□□□□□ -1.81
CSMD1-201ENST00000335551 PLAC8Q9NZF1 115 aa3.72□□□□□ -1.81
CSMD1-201ENST00000335551 ADM2Q7Z4H4 148 aa3.71□□□□□ -1.82
CSMD1-201ENST00000335551 KRTAP26-1Q6PEX3 210 aa3.71□□□□□ -1.82
CSMD1-201ENST00000335551 TGP01266 2768 aa3.71□□□□□ -1.82
CSMD1-201ENST00000335551 SRRM2Q9UQ35 2752 aaKnown RBP3.71□□□□□ -1.82
CSMD1-201ENST00000335551 Q8NDZ9 215 aa3.71□□□□□ -1.82
CSMD1-201ENST00000335551 C20orf166-AS1Q96NR2 134 aa3.7□□□□□ -1.82
CSMD1-201ENST00000335551 LAMA2P24043 3122 aaKnown RBP3.7□□□□□ -1.82
CSMD1-201ENST00000335551 FRYQ5TBA9 3013 aa3.68□□□□□ -1.82
CSMD1-201ENST00000335551 KRTAP10-3P60369 221 aa3.67□□□□□ -1.82
CSMD1-201ENST00000335551 KRTAP1-3Q8IUG1 177 aa3.67□□□□□ -1.82
CSMD1-201ENST00000335551 TACC2O95359 2948 aa3.67□□□□□ -1.82
CSMD1-201ENST00000335551 PCNTO95613 3336 aa3.66□□□□□ -1.82
CSMD1-201ENST00000335551 KRTAP29-1A8MX34 341 aaPredicted RBP3.66□□□□□ -1.82
CSMD1-201ENST00000335551 CRYBG3Q68DQ2 2970 aa3.66□□□□□ -1.82
CSMD1-201ENST00000335551 TRIOO75962 3097 aa3.65□□□□□ -1.83
CSMD1-201ENST00000335551 PRUNE2Q8WUY3 3088 aa3.64□□□□□ -1.83
CSMD1-201ENST00000335551 LCE6AA0A183 80 aa3.64□□□□□ -1.83
CSMD1-201ENST00000335551 KRTAP1-1Q07627 177 aa3.64□□□□□ -1.83
CSMD1-201ENST00000335551 VPS13AQ96RL7 3174 aa3.62□□□□□ -1.83
CSMD1-201ENST00000335551 A8MUU9 505 aa3.61□□□□□ -1.83
CSMD1-201ENST00000335551 NBEAQ8NFP9 2946 aa3.61□□□□□ -1.83
CSMD1-201ENST00000335551 PP632Q6XCG6 107 aa3.6□□□□□ -1.83
CSMD1-201ENST00000335551 TNRC18O15417 2968 aaPredicted RBP3.6□□□□□ -1.83
CSMD1-201ENST00000335551 C10orf95Q9H7T3 257 aa3.6□□□□□ -1.83
CSMD1-201ENST00000335551 ZZEF1O43149 2961 aa3.6□□□□□ -1.83
CSMD1-201ENST00000335551 KRTAP4-16G5E9R7 235 aaPredicted RBP3.59□□□□□ -1.84
CSMD1-201ENST00000335551 A8MU10 97 aa3.58□□□□□ -1.84
CSMD1-201ENST00000335551 TENM4Q6N022 2769 aa3.58□□□□□ -1.84
CSMD1-201ENST00000335551 KRTAP11-1Q8IUC1 163 aa3.58□□□□□ -1.84
CSMD1-201ENST00000335551 RPS29P62273 56 aaKnown RBP3.57□□□□□ -1.84
CSMD1-201ENST00000335551 ZANQ9Y493 2812 aa3.57□□□□□ -1.84
CSMD1-201ENST00000335551 COL12A1Q99715 3063 aa3.56□□□□□ -1.84
CSMD1-201ENST00000335551 DCHS2Q6V1P9 2916 aa3.56□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 75.5 ms