RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 A0A087WVE0 104 aa4.42□□□□□ -1.7
SF3B1-201ENST00000335508 LINC01547P58512 204 aaPredicted RBP4.42□□□□□ -1.7
SF3B1-201ENST00000335508 Q6ZQT0 140 aa4.42□□□□□ -1.7
SF3B1-201ENST00000335508 ATP5EP56381 51 aaPredicted RBP4.41□□□□□ -1.7
SF3B1-201ENST00000335508 MOBPQ13875 183 aa4.41□□□□□ -1.7
SF3B1-201ENST00000335508 TP53AIP1Q9HCN2 124 aa4.4□□□□□ -1.7
SF3B1-201ENST00000335508 IGLV5-48A0A075B6I7 105 aa4.4□□□□□ -1.7
SF3B1-201ENST00000335508 A8MUN3 132 aa4.4□□□□□ -1.7
SF3B1-201ENST00000335508 TNP2Q05952 138 aa4.4□□□□□ -1.7
SF3B1-201ENST00000335508 SPRR1AP35321 89 aa4.4□□□□□ -1.7
SF3B1-201ENST00000335508 Q6ZR54 194 aa4.4□□□□□ -1.71
SF3B1-201ENST00000335508 KRTAP26-1Q6PEX3 210 aa4.39□□□□□ -1.71
SF3B1-201ENST00000335508 LCA10Q71F78 164 aa4.39□□□□□ -1.71
SF3B1-201ENST00000335508 FAM30AQ9NZY2 134 aa4.39□□□□□ -1.71
SF3B1-201ENST00000335508 PSORS1C2Q9UIG4 136 aa4.39□□□□□ -1.71
SF3B1-201ENST00000335508 MUC3AQ02505 3323 aa4.39□□□□□ -1.71
SF3B1-201ENST00000335508 MYO15AQ9UKN7 3530 aa4.39□□□□□ -1.71
SF3B1-201ENST00000335508 LCE6AA0A183 80 aa4.39□□□□□ -1.71
SF3B1-201ENST00000335508 IGLV7-43P04211 117 aa4.39□□□□□ -1.71
SF3B1-201ENST00000335508 TYMSOSQ8TAI1 123 aa4.38□□□□□ -1.71
SF3B1-201ENST00000335508 HCG22E2RYF7 251 aa4.38□□□□□ -1.71
SF3B1-201ENST00000335508 Q8N377 158 aa4.38□□□□□ -1.71
SF3B1-201ENST00000335508 A0A1W2PNN7 141 aa4.38□□□□□ -1.71
SF3B1-201ENST00000335508 ST20-AS1Q8NBB2 130 aa4.38□□□□□ -1.71
SF3B1-201ENST00000335508 FAM168BA1KXE4 195 aa4.37□□□□□ -1.71
SF3B1-201ENST00000335508 KRTAP1-5Q9BYS1 174 aa4.37□□□□□ -1.71
SF3B1-201ENST00000335508 H3BPC8 53 aa4.37□□□□□ -1.71
SF3B1-201ENST00000335508 SPRR4Q96PI1 79 aa4.37□□□□□ -1.71
SF3B1-201ENST00000335508 PLAC8Q9NZF1 115 aa4.37□□□□□ -1.71
SF3B1-201ENST00000335508 FBN3Q75N90 2809 aa4.37□□□□□ -1.71
SF3B1-201ENST00000335508 LINC00208Q96KT6 92 aa4.37□□□□□ -1.71
SF3B1-201ENST00000335508 RPS28P62857 69 aaKnown RBP4.37□□□□□ -1.71
SF3B1-201ENST00000335508 IGHV6-1A0A0B4J1U7 121 aa4.37□□□□□ -1.71
SF3B1-201ENST00000335508 SPRR1BP22528 89 aa4.37□□□□□ -1.71
SF3B1-201ENST00000335508 FAM229BQ4G0N7 80 aa4.36□□□□□ -1.71
SF3B1-201ENST00000335508 TMEM254Q8TBM7 123 aa4.36□□□□□ -1.71
SF3B1-201ENST00000335508 PRAC1Q96KF2 57 aa4.36□□□□□ -1.71
SF3B1-201ENST00000335508 C7orf65Q6ZTY9 151 aa4.35□□□□□ -1.71
SF3B1-201ENST00000335508 SPACA4Q8TDM5 124 aa4.35□□□□□ -1.71
SF3B1-201ENST00000335508 hDV103S1A0JD37 113 aa4.34□□□□□ -1.71
SF3B1-201ENST00000335508 SPINK1P00995 79 aa4.34□□□□□ -1.72
SF3B1-201ENST00000335508 IGFL1Q6UW32 110 aa4.33□□□□□ -1.72
SF3B1-201ENST00000335508 CELSR1Q9NYQ6 3014 aa4.33□□□□□ -1.72
SF3B1-201ENST00000335508 Q5XG85 94 aa4.33□□□□□ -1.72
SF3B1-201ENST00000335508 OXTP01178 125 aa4.32□□□□□ -1.72
SF3B1-201ENST00000335508 A8MWP4 228 aa4.32□□□□□ -1.72
SF3B1-201ENST00000335508 TRAV22A0A0B4J277 110 aa4.32□□□□□ -1.72
SF3B1-201ENST00000335508 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP4.32□□□□□ -1.72
SF3B1-201ENST00000335508 A0A1W2PNM2 257 aa4.31□□□□□ -1.72
SF3B1-201ENST00000335508 PRR15Q8IV56 129 aa4.31□□□□□ -1.72
SF3B1-201ENST00000335508 LINC00304Q8N9R0 145 aa4.31□□□□□ -1.72
SF3B1-201ENST00000335508 ERC2-IT1O76042 136 aa4.31□□□□□ -1.72
SF3B1-201ENST00000335508 OBSCN-AS1Q96MR7 158 aa4.31□□□□□ -1.72
SF3B1-201ENST00000335508 SPEGQ15772 3267 aa4.29□□□□□ -1.72
SF3B1-201ENST00000335508 IGLV8-61A0A075B6I0 122 aa4.29□□□□□ -1.72
SF3B1-201ENST00000335508 LUZP6Q538Z0 58 aa4.29□□□□□ -1.72
SF3B1-201ENST00000335508 LOC101927531A0A1B0GV80 90 aa4.28□□□□□ -1.72
SF3B1-201ENST00000335508 H0Y9P7 68 aa4.28□□□□□ -1.72
SF3B1-201ENST00000335508 DEFB116Q30KQ4 102 aa4.28□□□□□ -1.72
SF3B1-201ENST00000335508 LINC00313P59037 77 aa4.28□□□□□ -1.73
SF3B1-201ENST00000335508 LINC01554Q52M75 96 aa4.28□□□□□ -1.73
SF3B1-201ENST00000335508 Q6ZRN7 208 aaPredicted RBP4.27□□□□□ -1.73
SF3B1-201ENST00000335508 USP34Q70CQ2 3546 aa4.27□□□□□ -1.73
SF3B1-201ENST00000335508 MRPL34Q9BQ48 92 aaKnown RBP4.27□□□□□ -1.73
SF3B1-201ENST00000335508 COX6B2Q6YFQ2 88 aa4.27□□□□□ -1.73
SF3B1-201ENST00000335508 SMR3BP02814 79 aaPredicted RBP4.26□□□□□ -1.73
SF3B1-201ENST00000335508 C1orf64Q8NEQ6 169 aa4.26□□□□□ -1.73
SF3B1-201ENST00000335508 A0A1B0GVX0 72 aa4.26□□□□□ -1.73
SF3B1-201ENST00000335508 C8orf17Q9NRJ1 99 aa4.25□□□□□ -1.73
SF3B1-201ENST00000335508 Q8NDZ9 215 aa4.25□□□□□ -1.73
SF3B1-201ENST00000335508 KRTAP16-1A8MUX0 517 aa4.25□□□□□ -1.73
SF3B1-201ENST00000335508 SMIM29Q86T20 159 aa4.24□□□□□ -1.73
SF3B1-201ENST00000335508 IGKV2D-30A0A075B6S6 120 aa4.24□□□□□ -1.73
SF3B1-201ENST00000335508 KRTAP4-16G5E9R7 235 aaPredicted RBP4.24□□□□□ -1.73
SF3B1-201ENST00000335508 IGKV2-30P06310 120 aa4.24□□□□□ -1.73
SF3B1-201ENST00000335508 DNAH14Q0VDD8 3507 aa4.23□□□□□ -1.73
SF3B1-201ENST00000335508 K7EQZ3 153 aa4.23□□□□□ -1.73
SF3B1-201ENST00000335508 PCOTHQ58A44 107 aa4.23□□□□□ -1.73
SF3B1-201ENST00000335508 KLKP1Q107X0 134 aa4.22□□□□□ -1.73
SF3B1-201ENST00000335508 ATP11AUNQ6ZP68 121 aa4.22□□□□□ -1.73
SF3B1-201ENST00000335508 ADM2Q7Z4H4 148 aa4.21□□□□□ -1.74
SF3B1-201ENST00000335508 KRTAP10-1P60331 282 aa4.2□□□□□ -1.74
SF3B1-201ENST00000335508 ANAPC11Q9NYG5 84 aa4.19□□□□□ -1.74
SF3B1-201ENST00000335508 KRTAP10-2P60368 255 aa4.19□□□□□ -1.74
SF3B1-201ENST00000335508 SEC61BP60468 96 aaKnown RBP4.18□□□□□ -1.74
SF3B1-201ENST00000335508 ACYP2P14621 99 aa4.17□□□□□ -1.74
SF3B1-201ENST00000335508 Q96NJ1 140 aa4.17□□□□□ -1.74
SF3B1-201ENST00000335508 CSAG1Q6PB30 78 aa4.16□□□□□ -1.74
SF3B1-201ENST00000335508 DSCR10P59022 87 aa4.16□□□□□ -1.74
SF3B1-201ENST00000335508 LINC00472Q9H8W2 130 aa4.16□□□□□ -1.74
SF3B1-201ENST00000335508 LINC00483Q53H64 154 aa4.15□□□□□ -1.74
SF3B1-201ENST00000335508 PANO1I0J062 215 aa4.15□□□□□ -1.75
SF3B1-201ENST00000335508 CYSTM1Q9H1C7 97 aa4.15□□□□□ -1.75
SF3B1-201ENST00000335508 MIR22HGQ0VDD5 57 aa4.14□□□□□ -1.75
SF3B1-201ENST00000335508 A0A0G2JQZ4 141 aa4.14□□□□□ -1.75
SF3B1-201ENST00000335508 IGLV7-46A0A075B6I9 117 aa4.13□□□□□ -1.75
SF3B1-201ENST00000335508 RELNP78509 3460 aa4.12□□□□□ -1.75
SF3B1-201ENST00000335508 Q6ZSA8 131 aa4.12□□□□□ -1.75
SF3B1-201ENST00000335508 FP248Q71RG6 208 aaPredicted RBP4.12□□□□□ -1.75
SF3B1-201ENST00000335508 OCR1Q9BZK8 76 aa4.12□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 9.1 ms