RNA–Protein interactions for RNA: ENST00000292478.8

PTCD1-201, Transcript of pentatricopeptide repeat domain 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTCD1, Length 5,582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD1-201ENST00000292478 LCA10Q71F78 164 aa7.89□□□□□ -1.15
PTCD1-201ENST00000292478 FLNAP21333 2647 aaKnown RBP7.88□□□□□ -1.15
PTCD1-201ENST00000292478 FLG2Q5D862 2391 aaPredicted RBP7.88□□□□□ -1.15
PTCD1-201ENST00000292478 KRTAP26-1Q6PEX3 210 aa7.87□□□□□ -1.15
PTCD1-201ENST00000292478 HRES1P13985 223 aa7.86□□□□□ -1.15
PTCD1-201ENST00000292478 PRR26Q8N8Z3 221 aa7.85□□□□□ -1.15
PTCD1-201ENST00000292478 LINC00472Q9H8W2 130 aa7.85□□□□□ -1.15
PTCD1-201ENST00000292478 CAMK2N1Q7Z7J9 78 aa7.84□□□□□ -1.15
PTCD1-201ENST00000292478 M0R2T5 61 aa7.84□□□□□ -1.15
PTCD1-201ENST00000292478 Q6ZSA8 131 aa7.84□□□□□ -1.16
PTCD1-201ENST00000292478 Q75L30 129 aa7.84□□□□□ -1.16
PTCD1-201ENST00000292478 ITPR3Q14573 2671 aa7.83□□□□□ -1.16
PTCD1-201ENST00000292478 SPEGQ15772 3267 aa7.83□□□□□ -1.16
PTCD1-201ENST00000292478 DSPP15924 2871 aaKnown RBP7.82□□□□□ -1.16
PTCD1-201ENST00000292478 ZCCHC13Q8WW36 166 aaKnown RBP7.82□□□□□ -1.16
PTCD1-201ENST00000292478 MAST4O15021 2626 aa7.81□□□□□ -1.16
PTCD1-201ENST00000292478 A0A0D9SG42 100 aa7.81□□□□□ -1.16
PTCD1-201ENST00000292478 LINC01558Q9Y6Z2 57 aa7.81□□□□□ -1.16
PTCD1-201ENST00000292478 LINC00483Q53H64 154 aa7.81□□□□□ -1.16
PTCD1-201ENST00000292478 ATRQ13535 2644 aa7.81□□□□□ -1.16
PTCD1-201ENST00000292478 NBEAQ8NFP9 2946 aa7.8□□□□□ -1.16
PTCD1-201ENST00000292478 A0A1B0GU33 70 aa7.77□□□□□ -1.17
PTCD1-201ENST00000292478 KRTAP1-5Q9BYS1 174 aa7.77□□□□□ -1.17
PTCD1-201ENST00000292478 FRYLO94915 3013 aa7.76□□□□□ -1.17
PTCD1-201ENST00000292478 FRYQ5TBA9 3013 aa7.76□□□□□ -1.17
PTCD1-201ENST00000292478 Q8N9P0 234 aaPredicted RBP7.76□□□□□ -1.17
PTCD1-201ENST00000292478 HELZ2Q9BYK8 2649 aaKnown RBP7.76□□□□□ -1.17
PTCD1-201ENST00000292478 SPTBN5Q9NRC6 3674 aaKnown RBP7.75□□□□□ -1.17
PTCD1-201ENST00000292478 Q5W150 140 aa7.74□□□□□ -1.17
PTCD1-201ENST00000292478 CENPEQ02224 2701 aa7.73□□□□□ -1.17
PTCD1-201ENST00000292478 REV3LO60673 3130 aa7.72□□□□□ -1.17
PTCD1-201ENST00000292478 Q5XG85 94 aa7.72□□□□□ -1.17
PTCD1-201ENST00000292478 CFAP46Q8IYW2 2715 aa7.72□□□□□ -1.17
PTCD1-201ENST00000292478 STAB1Q9NY15 2570 aa7.71□□□□□ -1.17
PTCD1-201ENST00000292478 AKAP13Q12802 2813 aa7.7□□□□□ -1.18
PTCD1-201ENST00000292478 KRTAP4-16G5E9R7 235 aaPredicted RBP7.7□□□□□ -1.18
PTCD1-201ENST00000292478 ZNF292O60281 2723 aa7.7□□□□□ -1.18
PTCD1-201ENST00000292478 CYSTM1Q9H1C7 97 aa7.69□□□□□ -1.18
PTCD1-201ENST00000292478 FP248Q71RG6 208 aaPredicted RBP7.68□□□□□ -1.18
PTCD1-201ENST00000292478 DMAC1Q96GE9 116 aa7.68□□□□□ -1.18
PTCD1-201ENST00000292478 EYSQ5T1H1 3165 aa7.67□□□□□ -1.18
PTCD1-201ENST00000292478 CSAG1Q6PB30 78 aa7.66□□□□□ -1.18
PTCD1-201ENST00000292478 S4R3F8 94 aa7.65□□□□□ -1.19
PTCD1-201ENST00000292478 FREM2Q5SZK8 3169 aa7.64□□□□□ -1.19
PTCD1-201ENST00000292478 MYO15AQ9UKN7 3530 aa7.64□□□□□ -1.19
PTCD1-201ENST00000292478 COL6A3P12111 3177 aa7.64□□□□□ -1.19
PTCD1-201ENST00000292478 Q5VV11 94 aa7.63□□□□□ -1.19
PTCD1-201ENST00000292478 SPINK7P58062 85 aa7.62□□□□□ -1.19
PTCD1-201ENST00000292478 KRTAP10-1P60331 282 aa7.62□□□□□ -1.19
PTCD1-201ENST00000292478 BOD1L1Q8NFC6 3051 aa7.61□□□□□ -1.19
PTCD1-201ENST00000292478 LCE6AA0A183 80 aa7.61□□□□□ -1.19
PTCD1-201ENST00000292478 Q6ZR54 194 aa7.61□□□□□ -1.19
PTCD1-201ENST00000292478 USP34Q70CQ2 3546 aa7.59□□□□□ -1.19
PTCD1-201ENST00000292478 KRTAP29-1A8MX34 341 aaPredicted RBP7.58□□□□□ -1.2
PTCD1-201ENST00000292478 KRTAP10-2P60368 255 aa7.57□□□□□ -1.2
PTCD1-201ENST00000292478 MAP1AP78559 2803 aaPredicted RBP7.57□□□□□ -1.2
PTCD1-201ENST00000292478 ADGRG4Q8IZF6 3080 aa7.56□□□□□ -1.2
PTCD1-201ENST00000292478 SEC61BP60468 96 aaKnown RBP7.56□□□□□ -1.2
PTCD1-201ENST00000292478 CHD6Q8TD26 2715 aa7.56□□□□□ -1.2
PTCD1-201ENST00000292478 KALRNO60229 2985 aa7.55□□□□□ -1.2
PTCD1-201ENST00000292478 Q5VSD8 79 aa7.54□□□□□ -1.2
PTCD1-201ENST00000292478 A0A0A0MQY5 61 aa7.54□□□□□ -1.2
PTCD1-201ENST00000292478 PANO1I0J062 215 aa7.52□□□□□ -1.2
PTCD1-201ENST00000292478 ASB16-AS1Q495Z4 193 aa7.52□□□□□ -1.21
PTCD1-201ENST00000292478 R4GN34 69 aa7.5□□□□□ -1.21
PTCD1-201ENST00000292478 GCN1Q92616 2671 aaKnown RBP7.49□□□□□ -1.21
PTCD1-201ENST00000292478 OXTP01178 125 aa7.49□□□□□ -1.21
PTCD1-201ENST00000292478 RPS29P62273 56 aaKnown RBP7.48□□□□□ -1.21
PTCD1-201ENST00000292478 LRBAP50851 2863 aa7.47□□□□□ -1.21
PTCD1-201ENST00000292478 Q6ZRN7 208 aaPredicted RBP7.45□□□□□ -1.22
PTCD1-201ENST00000292478 RPL37P61927 97 aaKnown RBP7.44□□□□□ -1.22
PTCD1-201ENST00000292478 H1FX-AS1Q4G0G2 97 aa7.44□□□□□ -1.22
PTCD1-201ENST00000292478 TACC2O95359 2948 aa7.43□□□□□ -1.22
PTCD1-201ENST00000292478 TEP1Q99973 2627 aaKnown RBP7.43□□□□□ -1.22
PTCD1-201ENST00000292478 PLAC4Q8WY50 150 aa7.43□□□□□ -1.22
PTCD1-201ENST00000292478 TEX15Q9BXT5 2789 aa7.43□□□□□ -1.22
PTCD1-201ENST00000292478 ATMQ13315 3056 aa7.43□□□□□ -1.22
PTCD1-201ENST00000292478 A0A087X002 238 aa7.42□□□□□ -1.22
PTCD1-201ENST00000292478 IGSF10Q6WRI0 2623 aa7.42□□□□□ -1.22
PTCD1-201ENST00000292478 LOC400499M0QZD8 3231 aa7.4□□□□□ -1.22
PTCD1-201ENST00000292478 NBEAL2Q6ZNJ1 2754 aa7.4□□□□□ -1.22
PTCD1-201ENST00000292478 PRAC1Q96KF2 57 aa7.4□□□□□ -1.23
PTCD1-201ENST00000292478 KRTAP7-1Q8IUC3 87 aa7.39□□□□□ -1.23
PTCD1-201ENST00000292478 UNC79Q9P2D8 2635 aa7.38□□□□□ -1.23
PTCD1-201ENST00000292478 DMXL2Q8TDJ6 3036 aa7.38□□□□□ -1.23
PTCD1-201ENST00000292478 ROMO1P60602 79 aa7.38□□□□□ -1.23
PTCD1-201ENST00000292478 KRTAP11-1Q8IUC1 163 aa7.38□□□□□ -1.23
PTCD1-201ENST00000292478 KRTAP13-1Q8IUC0 172 aa7.36□□□□□ -1.23
PTCD1-201ENST00000292478 ZZEF1O43149 2961 aa7.36□□□□□ -1.23
PTCD1-201ENST00000292478 CFAP47Q6ZTR5 3102 aa7.35□□□□□ -1.23
PTCD1-201ENST00000292478 SETXQ7Z333 2677 aaKnown RBP7.34□□□□□ -1.23
PTCD1-201ENST00000292478 NOTCH2NLQ7Z3S9 236 aa7.33□□□□□ -1.24
PTCD1-201ENST00000292478 WDFY3Q8IZQ1 3526 aa7.33□□□□□ -1.24
PTCD1-201ENST00000292478 STAB2Q8WWQ8 2551 aa7.32□□□□□ -1.24
PTCD1-201ENST00000292478 TNRC18O15417 2968 aaPredicted RBP7.32□□□□□ -1.24
PTCD1-201ENST00000292478 COL6A5A8TX70 2615 aa7.31□□□□□ -1.24
PTCD1-201ENST00000292478 SPATA8Q6RVD6 105 aa7.31□□□□□ -1.24
PTCD1-201ENST00000292478 M0QZ58 72 aa7.3□□□□□ -1.24
PTCD1-201ENST00000292478 DMBT1Q9UGM3 2413 aaPredicted RBP7.3□□□□□ -1.24
PTCD1-201ENST00000292478 NBEAL1Q6ZS30 2694 aa7.29□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 73.8 ms