RNA–Protein interactions for RNA: ENST00000282516.12

NIPBL-201, Transcript of NIPBL, cohesin loading factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NIPBL, Length 10,435 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-201ENST00000282516 Q8N9P0 234 aaPredicted RBP5.49□□□□□ -1.53
NIPBL-201ENST00000282516 ROMO1P60602 79 aa5.49□□□□□ -1.53
NIPBL-201ENST00000282516 ZNF292O60281 2723 aa5.47□□□□□ -1.53
NIPBL-201ENST00000282516 TNP2Q05952 138 aa5.47□□□□□ -1.53
NIPBL-201ENST00000282516 CASC10Q5T4H9 136 aa5.47□□□□□ -1.53
NIPBL-201ENST00000282516 KMT2BQ9UMN6 2715 aaPredicted RBP5.46□□□□□ -1.54
NIPBL-201ENST00000282516 H1FX-AS1Q4G0G2 97 aa5.45□□□□□ -1.54
NIPBL-201ENST00000282516 Q5VV11 94 aa5.45□□□□□ -1.54
NIPBL-201ENST00000282516 IGSF10Q6WRI0 2623 aa5.45□□□□□ -1.54
NIPBL-201ENST00000282516 ITPR2Q14571 2701 aa5.44□□□□□ -1.54
NIPBL-201ENST00000282516 Q5W150 140 aa5.44□□□□□ -1.54
NIPBL-201ENST00000282516 MMP24-AS1A0A0U1RRL7 71 aa5.44□□□□□ -1.54
NIPBL-201ENST00000282516 RPL37P61927 97 aaKnown RBP5.44□□□□□ -1.54
NIPBL-201ENST00000282516 SEC61BP60468 96 aaKnown RBP5.42□□□□□ -1.54
NIPBL-201ENST00000282516 Q5XG85 94 aa5.42□□□□□ -1.54
NIPBL-201ENST00000282516 PLAC4Q8WY50 150 aa5.42□□□□□ -1.54
NIPBL-201ENST00000282516 ASB16-AS1Q495Z4 193 aa5.41□□□□□ -1.54
NIPBL-201ENST00000282516 M0QZ58 72 aa5.4□□□□□ -1.54
NIPBL-201ENST00000282516 MAP1AP78559 2803 aaPredicted RBP5.39□□□□□ -1.55
NIPBL-201ENST00000282516 FP248Q71RG6 208 aaPredicted RBP5.38□□□□□ -1.55
NIPBL-201ENST00000282516 UTP20O75691 2785 aaKnown RBP5.38□□□□□ -1.55
NIPBL-201ENST00000282516 KRTAP16-1A8MUX0 517 aa5.37□□□□□ -1.55
NIPBL-201ENST00000282516 PLAC8Q9NZF1 115 aa5.35□□□□□ -1.55
NIPBL-201ENST00000282516 A0A096LNT2 108 aa5.35□□□□□ -1.55
NIPBL-201ENST00000282516 KRTAP10-3P60369 221 aa5.35□□□□□ -1.55
NIPBL-201ENST00000282516 APCP25054 2843 aa5.33□□□□□ -1.56
NIPBL-201ENST00000282516 LINC00472Q9H8W2 130 aa5.32□□□□□ -1.56
NIPBL-201ENST00000282516 ADM2Q7Z4H4 148 aa5.29□□□□□ -1.56
NIPBL-201ENST00000282516 NBEAL2Q6ZNJ1 2754 aa5.29□□□□□ -1.56
NIPBL-201ENST00000282516 SPRR1BP22528 89 aa5.28□□□□□ -1.56
NIPBL-201ENST00000282516 PANO1I0J062 215 aa5.28□□□□□ -1.56
NIPBL-201ENST00000282516 SPRR1AP35321 89 aa5.28□□□□□ -1.56
NIPBL-201ENST00000282516 Q5VSD8 79 aa5.25□□□□□ -1.57
NIPBL-201ENST00000282516 CYSTM1Q9H1C7 97 aa5.25□□□□□ -1.57
NIPBL-201ENST00000282516 Q6ZR54 194 aa5.24□□□□□ -1.57
NIPBL-201ENST00000282516 UBR5O95071 2799 aaPredicted RBP5.23□□□□□ -1.57
NIPBL-201ENST00000282516 Q8NDZ9 215 aa5.23□□□□□ -1.57
NIPBL-201ENST00000282516 C20orf166-AS1Q96NR2 134 aa5.22□□□□□ -1.57
NIPBL-201ENST00000282516 SPATA8Q6RVD6 105 aa5.22□□□□□ -1.57
NIPBL-201ENST00000282516 KRTAP26-1Q6PEX3 210 aa5.21□□□□□ -1.58
NIPBL-201ENST00000282516 OXTP01178 125 aa5.18□□□□□ -1.58
NIPBL-201ENST00000282516 KRTAP25-1Q3LHN0 102 aa5.18□□□□□ -1.58
NIPBL-201ENST00000282516 ITPR1Q14643 2758 aa5.18□□□□□ -1.58
NIPBL-201ENST00000282516 KRTAP1-1Q07627 177 aa5.17□□□□□ -1.58
NIPBL-201ENST00000282516 KRTAP1-3Q8IUG1 177 aa5.16□□□□□ -1.58
NIPBL-201ENST00000282516 NDUFAF8A1L188 74 aa5.13□□□□□ -1.59
NIPBL-201ENST00000282516 FLNCQ14315 2725 aa5.12□□□□□ -1.59
NIPBL-201ENST00000282516 A6NN06 94 aa5.1□□□□□ -1.59
NIPBL-201ENST00000282516 A8MUU9 505 aa5.1□□□□□ -1.59
NIPBL-201ENST00000282516 KRTAP10-1P60331 282 aa5.08□□□□□ -1.6
NIPBL-201ENST00000282516 HIVEP1P15822 2718 aa5.08□□□□□ -1.6
NIPBL-201ENST00000282516 LCE6AA0A183 80 aa5.08□□□□□ -1.6
NIPBL-201ENST00000282516 KRTAP1-5Q9BYS1 174 aa5.07□□□□□ -1.6
NIPBL-201ENST00000282516 KRTAP29-1A8MX34 341 aaPredicted RBP5.07□□□□□ -1.6
NIPBL-201ENST00000282516 RPS29P62273 56 aaKnown RBP5.07□□□□□ -1.6
NIPBL-201ENST00000282516 C10orf95Q9H7T3 257 aa5.07□□□□□ -1.6
NIPBL-201ENST00000282516 TENM3Q9P273 2699 aa5.07□□□□□ -1.6
NIPBL-201ENST00000282516 TRANK1O15050 2925 aa5.05□□□□□ -1.6
NIPBL-201ENST00000282516 CHD9Q3L8U1 2897 aa5.05□□□□□ -1.6
NIPBL-201ENST00000282516 CEP350Q5VT06 3117 aa5.05□□□□□ -1.6
NIPBL-201ENST00000282516 TNP1P09430 55 aa5.04□□□□□ -1.6
NIPBL-201ENST00000282516 TENM1Q9UKZ4 2725 aa5.03□□□□□ -1.6
NIPBL-201ENST00000282516 KRTAP10-2P60368 255 aa5.03□□□□□ -1.6
NIPBL-201ENST00000282516 A8MU10 97 aa5.01□□□□□ -1.61
NIPBL-201ENST00000282516 KRTAP4-16G5E9R7 235 aaPredicted RBP5.01□□□□□ -1.61
NIPBL-201ENST00000282516 PP632Q6XCG6 107 aa5□□□□□ -1.61
NIPBL-201ENST00000282516 A0A087X002 238 aa5□□□□□ -1.61
NIPBL-201ENST00000282516 KALRNO60229 2985 aa4.98□□□□□ -1.61
NIPBL-201ENST00000282516 NF1P21359 2839 aa4.97□□□□□ -1.61
NIPBL-201ENST00000282516 LRBAP50851 2863 aa4.96□□□□□ -1.62
NIPBL-201ENST00000282516 NOTCH2NLQ7Z3S9 236 aa4.95□□□□□ -1.62
NIPBL-201ENST00000282516 NIPBLQ6KC79 2804 aaeCLIP4.93□□□□□ -1.626e-7■■□□□ 12.1
NIPBL-201ENST00000282516 DSPP15924 2871 aaKnown RBP4.93□□□□□ -1.62
NIPBL-201ENST00000282516 DNAH12Q6ZR08 3092 aa4.91□□□□□ -1.62
NIPBL-201ENST00000282516 KRTAP11-1Q8IUC1 163 aa4.9□□□□□ -1.62
NIPBL-201ENST00000282516 A0A0C4DFX4 3053 aa4.88□□□□□ -1.63
NIPBL-201ENST00000282516 EP400Q96L91 3159 aa4.86□□□□□ -1.63
NIPBL-201ENST00000282516 Q6ZRN7 208 aaPredicted RBP4.85□□□□□ -1.63
NIPBL-201ENST00000282516 TGP01266 2768 aa4.84□□□□□ -1.63
NIPBL-201ENST00000282516 MGAQ8IWI9 3026 aa4.82□□□□□ -1.64
NIPBL-201ENST00000282516 KRTAP13-2Q52LG2 175 aa4.81□□□□□ -1.64
NIPBL-201ENST00000282516 TENM4Q6N022 2769 aa4.8□□□□□ -1.64
NIPBL-201ENST00000282516 KRTAP10-8P60410 259 aa4.79□□□□□ -1.64
NIPBL-201ENST00000282516 P0C880 135 aa4.78□□□□□ -1.64
NIPBL-201ENST00000282516 CHD7Q9P2D1 2997 aa4.78□□□□□ -1.64
NIPBL-201ENST00000282516 PRO2289Q9P1D8 64 aa4.77□□□□□ -1.65
NIPBL-201ENST00000282516 CELSR2Q9HCU4 2923 aa4.76□□□□□ -1.65
NIPBL-201ENST00000282516 CFAP54Q96N23 3096 aa4.76□□□□□ -1.65
NIPBL-201ENST00000282516 KRTAP13-1Q8IUC0 172 aa4.75□□□□□ -1.65
NIPBL-201ENST00000282516 FRYQ5TBA9 3013 aa4.75□□□□□ -1.65
NIPBL-201ENST00000282516 PDZD2O15018 2839 aa4.74□□□□□ -1.65
NIPBL-201ENST00000282516 C5orf42Q9H799 3197 aa4.73□□□□□ -1.65
NIPBL-201ENST00000282516 ASH1LQ9NR48 2969 aaKnown RBP4.73□□□□□ -1.65
NIPBL-201ENST00000282516 LAMA2P24043 3122 aaKnown RBP4.69□□□□□ -1.66
NIPBL-201ENST00000282516 SRCAPQ6ZRS2 3230 aa4.69□□□□□ -1.66
NIPBL-201ENST00000282516 H0YAA0 97 aa4.67□□□□□ -1.66
NIPBL-201ENST00000282516 FRYLO94915 3013 aa4.67□□□□□ -1.66
NIPBL-201ENST00000282516 CRYBG3Q68DQ2 2970 aa4.65□□□□□ -1.66
NIPBL-201ENST00000282516 PCNTO95613 3336 aa4.65□□□□□ -1.67
NIPBL-201ENST00000282516 KRTAP7-1Q8IUC3 87 aa4.65□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 70.7 ms