RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 ADM2Q7Z4H4 148 aa8.51□□□□□ -1.05
CCDC88A-201ENST00000263630 STAB1Q9NY15 2570 aa8.5□□□□□ -1.05
CCDC88A-201ENST00000263630 LINC00472Q9H8W2 130 aa8.49□□□□□ -1.05
CCDC88A-201ENST00000263630 SRCAPQ6ZRS2 3230 aa8.48□□□□□ -1.05
CCDC88A-201ENST00000263630 MAST4O15021 2626 aa8.46□□□□□ -1.06
CCDC88A-201ENST00000263630 ATRQ13535 2644 aa8.44□□□□□ -1.06
CCDC88A-201ENST00000263630 Q8NDZ9 215 aa8.44□□□□□ -1.06
CCDC88A-201ENST00000263630 KRTAP10-3P60369 221 aa8.44□□□□□ -1.06
CCDC88A-201ENST00000263630 SPRR1AP35321 89 aa8.41□□□□□ -1.06
CCDC88A-201ENST00000263630 SPRR1BP22528 89 aa8.4□□□□□ -1.06
CCDC88A-201ENST00000263630 A0A096LNT2 108 aa8.4□□□□□ -1.06
CCDC88A-201ENST00000263630 PANO1I0J062 215 aa8.4□□□□□ -1.07
CCDC88A-201ENST00000263630 SPATA8Q6RVD6 105 aa8.39□□□□□ -1.07
CCDC88A-201ENST00000263630 OXTP01178 125 aa8.39□□□□□ -1.07
CCDC88A-201ENST00000263630 KRTAP25-1Q3LHN0 102 aa8.39□□□□□ -1.07
CCDC88A-201ENST00000263630 Q6ZR54 194 aa8.38□□□□□ -1.07
CCDC88A-201ENST00000263630 FLNAP21333 2647 aaKnown RBP8.34□□□□□ -1.07
CCDC88A-201ENST00000263630 Q5VSD8 79 aa8.33□□□□□ -1.08
CCDC88A-201ENST00000263630 STAB2Q8WWQ8 2551 aa8.33□□□□□ -1.08
CCDC88A-201ENST00000263630 CYSTM1Q9H1C7 97 aa8.32□□□□□ -1.08
CCDC88A-201ENST00000263630 KRTAP26-1Q6PEX3 210 aa8.31□□□□□ -1.08
CCDC88A-201ENST00000263630 NDUFAF8A1L188 74 aa8.29□□□□□ -1.08
CCDC88A-201ENST00000263630 ITPR3Q14573 2671 aa8.27□□□□□ -1.09
CCDC88A-201ENST00000263630 A8MUU9 505 aa8.24□□□□□ -1.09
CCDC88A-201ENST00000263630 FLNBO75369 2602 aaKnown RBP8.24□□□□□ -1.09
CCDC88A-201ENST00000263630 TNP1P09430 55 aa8.22□□□□□ -1.09
CCDC88A-201ENST00000263630 NOTCH1P46531 2555 aa8.19□□□□□ -1.1
CCDC88A-201ENST00000263630 C10orf95Q9H7T3 257 aa8.18□□□□□ -1.1
CCDC88A-201ENST00000263630 CHD6Q8TD26 2715 aa8.18□□□□□ -1.1
CCDC88A-201ENST00000263630 KMT2BQ9UMN6 2715 aaPredicted RBP8.15□□□□□ -1.1
CCDC88A-201ENST00000263630 A6NN06 94 aa8.15□□□□□ -1.11
CCDC88A-201ENST00000263630 UNC79Q9P2D8 2635 aa8.13□□□□□ -1.11
CCDC88A-201ENST00000263630 RPS29P62273 56 aaKnown RBP8.1□□□□□ -1.11
CCDC88A-201ENST00000263630 TEX15Q9BXT5 2789 aa8.1□□□□□ -1.11
CCDC88A-201ENST00000263630 COL6A5A8TX70 2615 aa8.1□□□□□ -1.11
CCDC88A-201ENST00000263630 PP632Q6XCG6 107 aa8.1□□□□□ -1.11
CCDC88A-201ENST00000263630 HELZ2Q9BYK8 2649 aaKnown RBP8.09□□□□□ -1.11
CCDC88A-201ENST00000263630 A0A087X002 238 aa8.08□□□□□ -1.12
CCDC88A-201ENST00000263630 KRTAP1-3Q8IUG1 177 aa8.06□□□□□ -1.12
CCDC88A-201ENST00000263630 KRTAP29-1A8MX34 341 aaPredicted RBP8.05□□□□□ -1.12
CCDC88A-201ENST00000263630 A8MU10 97 aa8.03□□□□□ -1.12
CCDC88A-201ENST00000263630 KRTAP10-1P60331 282 aa8.02□□□□□ -1.13
CCDC88A-201ENST00000263630 LCE6AA0A183 80 aa8.01□□□□□ -1.13
CCDC88A-201ENST00000263630 KRTAP1-1Q07627 177 aa8.01□□□□□ -1.13
CCDC88A-201ENST00000263630 BAHCC1Q9P281 2608 aa7.99□□□□□ -1.13
CCDC88A-201ENST00000263630 EP400Q96L91 3159 aa7.98□□□□□ -1.13
CCDC88A-201ENST00000263630 CEP350Q5VT06 3117 aa7.98□□□□□ -1.13
CCDC88A-201ENST00000263630 GCN1Q92616 2671 aaKnown RBP7.97□□□□□ -1.13
CCDC88A-201ENST00000263630 KRTAP10-2P60368 255 aa7.93□□□□□ -1.14
CCDC88A-201ENST00000263630 KRTAP4-16G5E9R7 235 aaPredicted RBP7.92□□□□□ -1.14
CCDC88A-201ENST00000263630 P0C880 135 aa7.92□□□□□ -1.14
CCDC88A-201ENST00000263630 KRTAP11-1Q8IUC1 163 aa7.91□□□□□ -1.14
CCDC88A-201ENST00000263630 KRTAP1-5Q9BYS1 174 aa7.9□□□□□ -1.14
CCDC88A-201ENST00000263630 NOTCH2NLQ7Z3S9 236 aa7.9□□□□□ -1.15
CCDC88A-201ENST00000263630 C5orf42Q9H799 3197 aa7.84□□□□□ -1.15
CCDC88A-201ENST00000263630 IGSF10Q6WRI0 2623 aa7.83□□□□□ -1.16
CCDC88A-201ENST00000263630 TEP1Q99973 2627 aaKnown RBP7.81□□□□□ -1.16
CCDC88A-201ENST00000263630 APCP25054 2843 aa7.81□□□□□ -1.16
CCDC88A-201ENST00000263630 NSD1Q96L73 2696 aaPredicted RBP7.81□□□□□ -1.16
CCDC88A-201ENST00000263630 ITPR2Q14571 2701 aa7.79□□□□□ -1.16
CCDC88A-201ENST00000263630 KRTAP10-8P60410 259 aa7.78□□□□□ -1.16
CCDC88A-201ENST00000263630 SETXQ7Z333 2677 aaKnown RBP7.78□□□□□ -1.16
CCDC88A-201ENST00000263630 PRO2289Q9P1D8 64 aa7.76□□□□□ -1.17
CCDC88A-201ENST00000263630 PCNTO95613 3336 aa7.74□□□□□ -1.17
CCDC88A-201ENST00000263630 Q6ZRN7 208 aaPredicted RBP7.73□□□□□ -1.17
CCDC88A-201ENST00000263630 GOLGB1Q14789 3259 aaKnown RBP7.7□□□□□ -1.18
CCDC88A-201ENST00000263630 A0A0C4DFX4 3053 aa7.69□□□□□ -1.18
CCDC88A-201ENST00000263630 DNAH12Q6ZR08 3092 aa7.67□□□□□ -1.18
CCDC88A-201ENST00000263630 CFAP54Q96N23 3096 aa7.67□□□□□ -1.18
CCDC88A-201ENST00000263630 ZNF292O60281 2723 aa7.62□□□□□ -1.19
CCDC88A-201ENST00000263630 NBEAL2Q6ZNJ1 2754 aa7.59□□□□□ -1.19
CCDC88A-201ENST00000263630 UTP20O75691 2785 aaKnown RBP7.57□□□□□ -1.2
CCDC88A-201ENST00000263630 UBR5O95071 2799 aaPredicted RBP7.55□□□□□ -1.2
CCDC88A-201ENST00000263630 KRTAP13-2Q52LG2 175 aa7.54□□□□□ -1.2
CCDC88A-201ENST00000263630 KRTAP13-1Q8IUC0 172 aa7.48□□□□□ -1.21
CCDC88A-201ENST00000263630 UTRNP46939 3433 aa7.46□□□□□ -1.22
CCDC88A-201ENST00000263630 MAP1AP78559 2803 aaPredicted RBP7.45□□□□□ -1.22
CCDC88A-201ENST00000263630 H0YAA0 97 aa7.45□□□□□ -1.22
CCDC88A-201ENST00000263630 ITPR1Q14643 2758 aa7.44□□□□□ -1.22
CCDC88A-201ENST00000263630 LAMA2P24043 3122 aaKnown RBP7.42□□□□□ -1.22
CCDC88A-201ENST00000263630 KRTAP10-10P60014 251 aa7.39□□□□□ -1.23
CCDC88A-201ENST00000263630 A0A1B0GVY2 172 aa7.35□□□□□ -1.23
CCDC88A-201ENST00000263630 FRYQ5TBA9 3013 aa7.33□□□□□ -1.24
CCDC88A-201ENST00000263630 XP32Q5T750 250 aa7.33□□□□□ -1.24
CCDC88A-201ENST00000263630 KRTAP7-1Q8IUC3 87 aa7.3□□□□□ -1.24
CCDC88A-201ENST00000263630 TRANK1O15050 2925 aa7.3□□□□□ -1.24
CCDC88A-201ENST00000263630 DSPP15924 2871 aaKnown RBP7.3□□□□□ -1.24
CCDC88A-201ENST00000263630 TPRXLQ17RH7 258 aa7.3□□□□□ -1.24
CCDC88A-201ENST00000263630 MGAQ8IWI9 3026 aa7.28□□□□□ -1.24
CCDC88A-201ENST00000263630 TENM3Q9P273 2699 aa7.25□□□□□ -1.25
CCDC88A-201ENST00000263630 CRYBG3Q68DQ2 2970 aa7.25□□□□□ -1.25
CCDC88A-201ENST00000263630 LRBAP50851 2863 aa7.24□□□□□ -1.25
CCDC88A-201ENST00000263630 REV3LO60673 3130 aa7.24□□□□□ -1.25
CCDC88A-201ENST00000263630 WDFY4Q6ZS81 3184 aa7.23□□□□□ -1.25
CCDC88A-201ENST00000263630 FREM2Q5SZK8 3169 aa7.22□□□□□ -1.25
CCDC88A-201ENST00000263630 FRYLO94915 3013 aa7.17□□□□□ -1.26
CCDC88A-201ENST00000263630 KALRNO60229 2985 aa7.17□□□□□ -1.26
CCDC88A-201ENST00000263630 ASH1LQ9NR48 2969 aaKnown RBP7.15□□□□□ -1.26
CCDC88A-201ENST00000263630 TRIOO75962 3097 aa7.14□□□□□ -1.27
CCDC88A-201ENST00000263630 KRTAP12-2P59991 146 aa7.14□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 7.1 ms