RNA–Protein interactions for RNA: ENST00000254667.7

PTPRE-201, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRE, Length 5,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-201ENST00000254667 KRTAP10-1P60331 282 aa11.42□□□□□ -0.58
PTPRE-201ENST00000254667 CSAG1Q6PB30 78 aa11.42□□□□□ -0.58
PTPRE-201ENST00000254667 LINC00483Q53H64 154 aa11.41□□□□□ -0.58
PTPRE-201ENST00000254667 Q75L30 129 aa11.41□□□□□ -0.58
PTPRE-201ENST00000254667 TEX15Q9BXT5 2789 aa11.41□□□□□ -0.58
PTPRE-201ENST00000254667 LINC01558Q9Y6Z2 57 aa11.4□□□□□ -0.58
PTPRE-201ENST00000254667 TEP1Q99973 2627 aaKnown RBP11.4□□□□□ -0.58
PTPRE-201ENST00000254667 CHD6Q8TD26 2715 aa11.39□□□□□ -0.59
PTPRE-201ENST00000254667 MGAQ8IWI9 3026 aa11.39□□□□□ -0.59
PTPRE-201ENST00000254667 Q5VSD8 79 aa11.39□□□□□ -0.59
PTPRE-201ENST00000254667 RANBP2P49792 3224 aaKnown RBP11.38□□□□□ -0.59
PTPRE-201ENST00000254667 AKAP13Q12802 2813 aa11.37□□□□□ -0.59
PTPRE-201ENST00000254667 KRTAP10-2P60368 255 aa11.37□□□□□ -0.59
PTPRE-201ENST00000254667 UNC79Q9P2D8 2635 aa11.37□□□□□ -0.59
PTPRE-201ENST00000254667 S4R3F8 94 aa11.37□□□□□ -0.59
PTPRE-201ENST00000254667 PCNTO95613 3336 aa11.36□□□□□ -0.59
PTPRE-201ENST00000254667 COL6A5A8TX70 2615 aa11.36□□□□□ -0.59
PTPRE-201ENST00000254667 SPINK7P58062 85 aa11.35□□□□□ -0.59
PTPRE-201ENST00000254667 SEC61BP60468 96 aaKnown RBP11.35□□□□□ -0.59
PTPRE-201ENST00000254667 CAMK2N1Q7Z7J9 78 aa11.35□□□□□ -0.59
PTPRE-201ENST00000254667 M0R2T5 61 aa11.35□□□□□ -0.59
PTPRE-201ENST00000254667 Q6ZR54 194 aa11.34□□□□□ -0.59
PTPRE-201ENST00000254667 KRTAP4-16G5E9R7 235 aaPredicted RBP11.32□□□□□ -0.6
PTPRE-201ENST00000254667 DMAC1Q96GE9 116 aa11.32□□□□□ -0.6
PTPRE-201ENST00000254667 SETXQ7Z333 2677 aaKnown RBP11.26□□□□□ -0.61
PTPRE-201ENST00000254667 FP248Q71RG6 208 aaPredicted RBP11.26□□□□□ -0.61
PTPRE-201ENST00000254667 IGSF10Q6WRI0 2623 aa11.26□□□□□ -0.61
PTPRE-201ENST00000254667 NBEAL1Q6ZS30 2694 aa11.24□□□□□ -0.61
PTPRE-201ENST00000254667 PANO1I0J062 215 aa11.22□□□□□ -0.61
PTPRE-201ENST00000254667 GCN1Q92616 2671 aaKnown RBP11.22□□□□□ -0.61
PTPRE-201ENST00000254667 NOTCH1P46531 2555 aa11.19□□□□□ -0.62
PTPRE-201ENST00000254667 CYSTM1Q9H1C7 97 aa11.18□□□□□ -0.62
PTPRE-201ENST00000254667 LUZP6Q538Z0 58 aa11.16□□□□□ -0.62
PTPRE-201ENST00000254667 Q5XG85 94 aa11.14□□□□□ -0.63
PTPRE-201ENST00000254667 CFAP54Q96N23 3096 aa11.14□□□□□ -0.63
PTPRE-201ENST00000254667 R4GN34 69 aa11.13□□□□□ -0.63
PTPRE-201ENST00000254667 DSPP15924 2871 aaKnown RBP11.12□□□□□ -0.63
PTPRE-201ENST00000254667 BAHCC1Q9P281 2608 aa11.12□□□□□ -0.63
PTPRE-201ENST00000254667 Q5VV11 94 aa11.11□□□□□ -0.63
PTPRE-201ENST00000254667 LAMA3Q16787 3333 aa11.11□□□□□ -0.63
PTPRE-201ENST00000254667 KRTAP29-1A8MX34 341 aaPredicted RBP11.1□□□□□ -0.63
PTPRE-201ENST00000254667 OXTP01178 125 aa11.1□□□□□ -0.63
PTPRE-201ENST00000254667 Q6ZRN7 208 aaPredicted RBP11.08□□□□□ -0.64
PTPRE-201ENST00000254667 A0A087X002 238 aa11.07□□□□□ -0.64
PTPRE-201ENST00000254667 BRCA2P51587 3418 aa11.07□□□□□ -0.64
PTPRE-201ENST00000254667 ASB16-AS1Q495Z4 193 aa11.06□□□□□ -0.64
PTPRE-201ENST00000254667 RPS29P62273 56 aaKnown RBP11.05□□□□□ -0.64
PTPRE-201ENST00000254667 WDFY4Q6ZS81 3184 aa11.04□□□□□ -0.64
PTPRE-201ENST00000254667 UBR5O95071 2799 aaPredicted RBP11.01□□□□□ -0.65
PTPRE-201ENST00000254667 MKI67P46013 3256 aaKnown RBP11.01□□□□□ -0.65
PTPRE-201ENST00000254667 RPL37P61927 97 aaKnown RBP10.98□□□□□ -0.65
PTPRE-201ENST00000254667 NSD1Q96L73 2696 aaPredicted RBP10.97□□□□□ -0.65
PTPRE-201ENST00000254667 NBEAL2Q6ZNJ1 2754 aa10.95□□□□□ -0.66
PTPRE-201ENST00000254667 H1FX-AS1Q4G0G2 97 aa10.94□□□□□ -0.66
PTPRE-201ENST00000254667 A0A0C4DFX4 3053 aa10.94□□□□□ -0.66
PTPRE-201ENST00000254667 KRTAP11-1Q8IUC1 163 aa10.94□□□□□ -0.66
PTPRE-201ENST00000254667 KRTAP21-3Q3LHN1 58 aa10.93□□□□□ -0.66
PTPRE-201ENST00000254667 ITPR2Q14571 2701 aa10.92□□□□□ -0.66
PTPRE-201ENST00000254667 KRTAP7-1Q8IUC3 87 aa10.9□□□□□ -0.66
PTPRE-201ENST00000254667 M0QZ58 72 aa10.9□□□□□ -0.67
PTPRE-201ENST00000254667 PRUNE2Q8WUY3 3088 aa10.87□□□□□ -0.67
PTPRE-201ENST00000254667 FLG2Q5D862 2391 aaPredicted RBP10.87□□□□□ -0.67
PTPRE-201ENST00000254667 MAP1AP78559 2803 aaPredicted RBP10.86□□□□□ -0.67
PTPRE-201ENST00000254667 KRTAP13-1Q8IUC0 172 aa10.86□□□□□ -0.67
PTPRE-201ENST00000254667 NOTCH2NLQ7Z3S9 236 aa10.85□□□□□ -0.67
PTPRE-201ENST00000254667 LAMA2P24043 3122 aaKnown RBP10.85□□□□□ -0.67
PTPRE-201ENST00000254667 ROMO1P60602 79 aa10.84□□□□□ -0.67
PTPRE-201ENST00000254667 PRAC1Q96KF2 57 aa10.84□□□□□ -0.67
PTPRE-201ENST00000254667 STAB2Q8WWQ8 2551 aa10.82□□□□□ -0.68
PTPRE-201ENST00000254667 ITPR1Q14643 2758 aa10.81□□□□□ -0.68
PTPRE-201ENST00000254667 DMBT1Q9UGM3 2413 aaPredicted RBP10.81□□□□□ -0.68
PTPRE-201ENST00000254667 KMT2BQ9UMN6 2715 aaPredicted RBP10.81□□□□□ -0.68
PTPRE-201ENST00000254667 ADM2Q7Z4H4 148 aa10.8□□□□□ -0.68
PTPRE-201ENST00000254667 KRTAP13-2Q52LG2 175 aa10.78□□□□□ -0.68
PTPRE-201ENST00000254667 TRIOO75962 3097 aa10.76□□□□□ -0.69
PTPRE-201ENST00000254667 FRYQ5TBA9 3013 aa10.75□□□□□ -0.69
PTPRE-201ENST00000254667 PLAC4Q8WY50 150 aa10.72□□□□□ -0.69
PTPRE-201ENST00000254667 FLNCQ14315 2725 aa10.72□□□□□ -0.69
PTPRE-201ENST00000254667 VPS13AQ96RL7 3174 aa10.7□□□□□ -0.7
PTPRE-201ENST00000254667 CDH23Q9H251 3354 aa10.69□□□□□ -0.7
PTPRE-201ENST00000254667 SPATA8Q6RVD6 105 aa10.68□□□□□ -0.7
PTPRE-201ENST00000254667 UNC80Q8N2C7 3258 aa10.64□□□□□ -0.71
PTPRE-201ENST00000254667 XIRP2A4UGR9 3374 aa10.62□□□□□ -0.71
PTPRE-201ENST00000254667 HIVEP1P15822 2718 aa10.61□□□□□ -0.71
PTPRE-201ENST00000254667 ATMQ13315 3056 aa10.55□□□□□ -0.72
PTPRE-201ENST00000254667 A0A0A0MQY5 61 aa10.54□□□□□ -0.72
PTPRE-201ENST00000254667 A8MUU9 505 aa10.52□□□□□ -0.72
PTPRE-201ENST00000254667 TACC2O95359 2948 aa10.52□□□□□ -0.73
PTPRE-201ENST00000254667 UTP20O75691 2785 aaKnown RBP10.51□□□□□ -0.73
PTPRE-201ENST00000254667 COL12A1Q99715 3063 aa10.48□□□□□ -0.73
PTPRE-201ENST00000254667 SZT2Q5T011 3432 aa10.48□□□□□ -0.73
PTPRE-201ENST00000254667 NIPBLQ6KC79 2804 aaeCLIP10.45□□□□□ -0.74
PTPRE-201ENST00000254667 KALRNO60229 2985 aa10.45□□□□□ -0.74
PTPRE-201ENST00000254667 C20orf166-AS1Q96NR2 134 aa10.45□□□□□ -0.74
PTPRE-201ENST00000254667 DNAH14Q0VDD8 3507 aa10.42□□□□□ -0.74
PTPRE-201ENST00000254667 APCP25054 2843 aa10.41□□□□□ -0.74
PTPRE-201ENST00000254667 TENM4Q6N022 2769 aa10.41□□□□□ -0.74
PTPRE-201ENST00000254667 FRYLO94915 3013 aa10.41□□□□□ -0.74
PTPRE-201ENST00000254667 SPTBN5Q9NRC6 3674 aaKnown RBP10.37□□□□□ -0.75
PTPRE-201ENST00000254667 A8MU10 97 aa10.37□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms