RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 NDUFC2O95298 119 aa10.06□□□□□ -0.8
CCDC28A-202ENST00000611852 MUSTN1Q8IVN3 82 aa10.06□□□□□ -0.8
CCDC28A-202ENST00000611852 LINC00308Q8TCZ7 52 aa10.06□□□□□ -0.8
CCDC28A-202ENST00000611852 DMBT1Q9UGM3 2413 aaPredicted RBP10.05□□□□□ -0.8
CCDC28A-202ENST00000611852 ZNF861PO60384 105 aa10.05□□□□□ -0.8
CCDC28A-202ENST00000611852 DIRC1Q969H9 104 aa10.05□□□□□ -0.8
CCDC28A-202ENST00000611852 TMEM126AQ9H061 195 aa10.05□□□□□ -0.8
CCDC28A-202ENST00000611852 TRBV10-2A0A0K0K1G8 114 aa10.04□□□□□ -0.8
CCDC28A-202ENST00000611852 A0A1B0GWB2 263 aa10.04□□□□□ -0.8
CCDC28A-202ENST00000611852 K7ERJ3 54 aa10.04□□□□□ -0.8
CCDC28A-202ENST00000611852 TAX1BP3O14907 124 aa10.04□□□□□ -0.8
CCDC28A-202ENST00000611852 REG3GQ6UW15 175 aa10.04□□□□□ -0.8
CCDC28A-202ENST00000611852 A4D1N5 150 aa10.03□□□□□ -0.8
CCDC28A-202ENST00000611852 H0Y9J4 135 aa10.03□□□□□ -0.8
CCDC28A-202ENST00000611852 PPDPFQ9H3Y8 114 aa10.03□□□□□ -0.8
CCDC28A-202ENST00000611852 A0A1B0GV90 55 aa10.02□□□□□ -0.8
CCDC28A-202ENST00000611852 J3QL48 77 aa10.02□□□□□ -0.8
CCDC28A-202ENST00000611852 TRBV10-3A0A0K0K1G6 114 aa10.02□□□□□ -0.81
CCDC28A-202ENST00000611852 RPL28P46779 137 aaKnown RBP10.02□□□□□ -0.81
CCDC28A-202ENST00000611852 RAB37Q96AX2 223 aa10.02□□□□□ -0.81
CCDC28A-202ENST00000611852 FAT3Q8TDW7 4589 aa10.01□□□□□ -0.81
CCDC28A-202ENST00000611852 KRTAP13-1Q8IUC0 172 aa10.01□□□□□ -0.81
CCDC28A-202ENST00000611852 KCNQ1DNQ9H478 68 aa10.01□□□□□ -0.81
CCDC28A-202ENST00000611852 A0A0B4J2C4 111 aa10□□□□□ -0.81
CCDC28A-202ENST00000611852 UBE2AP49459 152 aa10□□□□□ -0.81
CCDC28A-202ENST00000611852 LINC01600Q96MT4 127 aa10□□□□□ -0.81
CCDC28A-202ENST00000611852 C9orf118A6NHY6 69 aa9.99□□□□□ -0.81
CCDC28A-202ENST00000611852 PRYO14603 147 aa9.99□□□□□ -0.81
CCDC28A-202ENST00000611852 CFC1BP0CG36 223 aa9.99□□□□□ -0.81
CCDC28A-202ENST00000611852 CFC1P0CG37 223 aa9.99□□□□□ -0.81
CCDC28A-202ENST00000611852 FAM19A1Q7Z5A9 133 aa9.99□□□□□ -0.81
CCDC28A-202ENST00000611852 IGLV6-57P01721 117 aa9.97□□□□□ -0.81
CCDC28A-202ENST00000611852 MT1HL1P0DM35 61 aa9.97□□□□□ -0.81
CCDC28A-202ENST00000611852 SPRR1AP35321 89 aa9.97□□□□□ -0.81
CCDC28A-202ENST00000611852 PRLHP81277 87 aa9.97□□□□□ -0.81
CCDC28A-202ENST00000611852 S100A7L2Q5SY68 101 aa9.97□□□□□ -0.81
CCDC28A-202ENST00000611852 PRO1854Q9UHT4 67 aa9.97□□□□□ -0.81
CCDC28A-202ENST00000611852 H3BUT2 72 aa9.96□□□□□ -0.82
CCDC28A-202ENST00000611852 KRTAP4-16G5E9R7 235 aaPredicted RBP9.95□□□□□ -0.82
CCDC28A-202ENST00000611852 KRTAP1-4P0C5Y4 121 aa9.95□□□□□ -0.82
CCDC28A-202ENST00000611852 LINC00337Q8N6G1 96 aa9.95□□□□□ -0.82
CCDC28A-202ENST00000611852 NAA38Q9BRA0 125 aaKnown RBP9.93□□□□□ -0.82
CCDC28A-202ENST00000611852 A0A1W2PPM0 123 aa9.92□□□□□ -0.82
CCDC28A-202ENST00000611852 TSPAN13O95857 204 aa9.92□□□□□ -0.82
CCDC28A-202ENST00000611852 VAMP3Q15836 100 aa9.92□□□□□ -0.82
CCDC28A-202ENST00000611852 TRAV23DV6A0A075B6W5 121 aa9.92□□□□□ -0.82
CCDC28A-202ENST00000611852 ETDCA0A1B0GVM5 59 aa9.92□□□□□ -0.82
CCDC28A-202ENST00000611852 FABP2P12104 132 aa9.92□□□□□ -0.82
CCDC28A-202ENST00000611852 Q1RN00 199 aa9.92□□□□□ -0.82
CCDC28A-202ENST00000611852 OR13C6PQ8NH95 151 aa9.92□□□□□ -0.82
CCDC28A-202ENST00000611852 KRTAP10-8P60410 259 aa9.91□□□□□ -0.82
CCDC28A-202ENST00000611852 LYRM7Q5U5X0 104 aa9.91□□□□□ -0.82
CCDC28A-202ENST00000611852 RPL13AP40429 203 aaKnown RBP9.9□□□□□ -0.82
CCDC28A-202ENST00000611852 HIGD2AQ9BW72 106 aa9.9□□□□□ -0.82
CCDC28A-202ENST00000611852 TRAV13-2A0A0B4J235 113 aa9.89□□□□□ -0.83
CCDC28A-202ENST00000611852 B5MCH6 92 aa9.89□□□□□ -0.83
CCDC28A-202ENST00000611852 H7C2G1 150 aa9.89□□□□□ -0.83
CCDC28A-202ENST00000611852 PRR26Q8N8Z3 221 aa9.89□□□□□ -0.83
CCDC28A-202ENST00000611852 HERC1Q15751 4861 aa9.89□□□□□ -0.83
CCDC28A-202ENST00000611852 ZNF73O43830 326 aaPredicted RBP9.88□□□□□ -0.83
CCDC28A-202ENST00000611852 CBY1Q9Y3M2 126 aa9.88□□□□□ -0.83
CCDC28A-202ENST00000611852 PSMB2P49721 201 aa9.87□□□□□ -0.83
CCDC28A-202ENST00000611852 Q6ZRX8 168 aa9.87□□□□□ -0.83
CCDC28A-202ENST00000611852 GTF2H5Q6ZYL4 71 aa9.87□□□□□ -0.83
CCDC28A-202ENST00000611852 SPCS1Q9Y6A9 102 aa9.87□□□□□ -0.83
CCDC28A-202ENST00000611852 SMCR5Q8TEV8 140 aa9.86□□□□□ -0.83
CCDC28A-202ENST00000611852 TNXBP22105 4242 aa9.85□□□□□ -0.83
CCDC28A-202ENST00000611852 K7EP34 96 aa9.85□□□□□ -0.83
CCDC28A-202ENST00000611852 ANAPC11Q9NYG5 84 aa9.84□□□□□ -0.83
CCDC28A-202ENST00000611852 UBE2V1Q13404 147 aa9.83□□□□□ -0.84
CCDC28A-202ENST00000611852 Q9BRP9 147 aa9.83□□□□□ -0.84
CCDC28A-202ENST00000611852 A0A087X002 238 aa9.82□□□□□ -0.84
CCDC28A-202ENST00000611852 COX6CP09669 75 aa9.82□□□□□ -0.84
CCDC28A-202ENST00000611852 SCGB1C2P0DMR2 95 aa9.82□□□□□ -0.84
CCDC28A-202ENST00000611852 TRIAP1O43715 76 aa9.82□□□□□ -0.84
CCDC28A-202ENST00000611852 ERC2-IT1O76042 136 aa9.81□□□□□ -0.84
CCDC28A-202ENST00000611852 CRYGAP11844 174 aa9.81□□□□□ -0.84
CCDC28A-202ENST00000611852 C6orf99Q4VX62 202 aa9.81□□□□□ -0.84
CCDC28A-202ENST00000611852 SPRR4Q96PI1 79 aa9.81□□□□□ -0.84
CCDC28A-202ENST00000611852 TRBV20-1A0A075B6N2 111 aa9.8□□□□□ -0.84
CCDC28A-202ENST00000611852 FAM229BQ4G0N7 80 aa9.8□□□□□ -0.84
CCDC28A-202ENST00000611852 ZNF706Q9Y5V0 76 aaPredicted RBP9.8□□□□□ -0.84
CCDC28A-202ENST00000611852 ELOF1P60002 83 aaKnown RBP9.77□□□□□ -0.84
CCDC28A-202ENST00000611852 KRTAP13-2Q52LG2 175 aa9.77□□□□□ -0.84
CCDC28A-202ENST00000611852 SMIM11BQ8TCY0 68 aa9.77□□□□□ -0.85
CCDC28A-202ENST00000611852 TRBV7-6A0A0J9YX20 115 aa9.76□□□□□ -0.85
CCDC28A-202ENST00000611852 COX7BP24311 80 aa9.76□□□□□ -0.85
CCDC28A-202ENST00000611852 TCL1BO95988 128 aa9.75□□□□□ -0.85
CCDC28A-202ENST00000611852 DHRS4-AS1Q9P1J3 65 aa9.75□□□□□ -0.85
CCDC28A-202ENST00000611852 H3BMG7 143 aa9.74□□□□□ -0.85
CCDC28A-202ENST00000611852 ATXN8Q156A1 80 aa9.74□□□□□ -0.85
CCDC28A-202ENST00000611852 TYMSOSQ8TAI1 123 aa9.74□□□□□ -0.85
CCDC28A-202ENST00000611852 LINC00483Q53H64 154 aa9.73□□□□□ -0.85
CCDC28A-202ENST00000611852 GAGE2AQ6NT46 116 aa9.73□□□□□ -0.85
CCDC28A-202ENST00000611852 C3orf22Q8N5N4 141 aa9.71□□□□□ -0.86
CCDC28A-202ENST00000611852 ST20-AS1Q8NBB2 130 aa9.71□□□□□ -0.86
CCDC28A-202ENST00000611852 CLEC2BQ92478 149 aa9.7□□□□□ -0.86
CCDC28A-202ENST00000611852 H0YGX0 51 aa9.69□□□□□ -0.86
CCDC28A-202ENST00000611852 LST1O00453 97 aa9.69□□□□□ -0.86
CCDC28A-202ENST00000611852 F8W1H4 67 aa9.68□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms