RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 ZNF73O43830 326 aaPredicted RBP8.83□□□□□ -1
UPF1-211ENST00000600868 Q8N1X5 172 aa8.83□□□□□ -1
UPF1-211ENST00000600868 PLA2G1BP04054 148 aaKnown RBP8.82□□□□□ -1
UPF1-211ENST00000600868 SMIM11BQ8TCY0 68 aa8.82□□□□□ -1
UPF1-211ENST00000600868 PCP4L1A6NKN8 68 aa8.81□□□□□ -1
UPF1-211ENST00000600868 K7ERJ3 54 aa8.81□□□□□ -1
UPF1-211ENST00000600868 KRTAP10-4P60372 401 aaPredicted RBP8.81□□□□□ -1
UPF1-211ENST00000600868 Q5VSD8 79 aa8.81□□□□□ -1
UPF1-211ENST00000600868 DIRC1Q969H9 104 aa8.81□□□□□ -1
UPF1-211ENST00000600868 TRBV7-6A0A0J9YX20 115 aa8.8□□□□□ -1
UPF1-211ENST00000600868 ETDCA0A1B0GVM5 59 aa8.8□□□□□ -1
UPF1-211ENST00000600868 IGLV7-43P04211 117 aa8.8□□□□□ -1
UPF1-211ENST00000600868 C6orf99Q4VX62 202 aa8.8□□□□□ -1
UPF1-211ENST00000600868 KRTAP17-1Q9BYP8 105 aa8.8□□□□□ -1
UPF1-211ENST00000600868 H0Y9J4 135 aa8.79□□□□□ -1
UPF1-211ENST00000600868 H7C2G1 150 aa8.79□□□□□ -1
UPF1-211ENST00000600868 RPL28P46779 137 aaKnown RBP8.79□□□□□ -1
UPF1-211ENST00000600868 BATFQ16520 125 aa8.79□□□□□ -1
UPF1-211ENST00000600868 FAM19A1Q7Z5A9 133 aa8.79□□□□□ -1
UPF1-211ENST00000600868 KRTAP13-1Q8IUC0 172 aa8.79□□□□□ -1
UPF1-211ENST00000600868 KIAA1109Q2LD37 5005 aa8.79□□□□□ -1
UPF1-211ENST00000600868 RYR1P21817 5038 aa8.79□□□□□ -1
UPF1-211ENST00000600868 VPS13BQ7Z7G8 4022 aa8.78□□□□□ -1
UPF1-211ENST00000600868 B5MCH6 92 aa8.78□□□□□ -1
UPF1-211ENST00000600868 UBE2AP49459 152 aa8.78□□□□□ -1
UPF1-211ENST00000600868 BIRC6Q9NR09 4857 aa8.78□□□□□ -1
UPF1-211ENST00000600868 ZNF861PO60384 105 aa8.77□□□□□ -1.01
UPF1-211ENST00000600868 Q1RN00 199 aa8.77□□□□□ -1.01
UPF1-211ENST00000600868 Q6ZRX8 168 aa8.77□□□□□ -1.01
UPF1-211ENST00000600868 COX7BP24311 80 aa8.76□□□□□ -1.01
UPF1-211ENST00000600868 ELOF1P60002 83 aaKnown RBP8.76□□□□□ -1.01
UPF1-211ENST00000600868 PRLHP81277 87 aa8.76□□□□□ -1.01
UPF1-211ENST00000600868 SNHG12Q9BXW3 62 aa8.76□□□□□ -1.01
UPF1-211ENST00000600868 FAT1Q14517 4588 aa8.75□□□□□ -1.01
UPF1-211ENST00000600868 TSPAN13O95857 204 aa8.75□□□□□ -1.01
UPF1-211ENST00000600868 VAMP3Q15836 100 aa8.75□□□□□ -1.01
UPF1-211ENST00000600868 SPINK6Q6UWN8 80 aa8.73□□□□□ -1.01
UPF1-211ENST00000600868 SRRM2Q9UQ35 2752 aaKnown RBP8.73□□□□□ -1.01
UPF1-211ENST00000600868 TRIAP1O43715 76 aa8.72□□□□□ -1.01
UPF1-211ENST00000600868 INAFM2P0DMQ5 153 aa8.72□□□□□ -1.01
UPF1-211ENST00000600868 Q9BRP9 147 aa8.72□□□□□ -1.01
UPF1-211ENST00000600868 H0YGX0 51 aa8.71□□□□□ -1.02
UPF1-211ENST00000600868 SMCR5Q8TEV8 140 aa8.71□□□□□ -1.02
UPF1-211ENST00000600868 HIGD2AQ9BW72 106 aa8.71□□□□□ -1.02
UPF1-211ENST00000600868 DHRS4-AS1Q9P1J3 65 aa8.71□□□□□ -1.02
UPF1-211ENST00000600868 PSMB2P49721 201 aa8.7□□□□□ -1.02
UPF1-211ENST00000600868 COX6CP09669 75 aa8.69□□□□□ -1.02
UPF1-211ENST00000600868 COL5A1-AS1Q5SY13 56 aa8.69□□□□□ -1.02
UPF1-211ENST00000600868 LINC00575Q6W349 94 aa8.69□□□□□ -1.02
UPF1-211ENST00000600868 TAX1BP3O14907 124 aa8.68□□□□□ -1.02
UPF1-211ENST00000600868 SLC25A20O43772 301 aa8.67□□□□□ -1.02
UPF1-211ENST00000600868 ERC2-IT1O76042 136 aa8.67□□□□□ -1.02
UPF1-211ENST00000600868 KRTAP4-5Q9BYR2 181 aa8.67□□□□□ -1.02
UPF1-211ENST00000600868 C9orf118A6NHY6 69 aa8.66□□□□□ -1.02
UPF1-211ENST00000600868 SCGB1C2P0DMR2 95 aa8.66□□□□□ -1.02
UPF1-211ENST00000600868 hADV29S1A0JD25 119 aa8.65□□□□□ -1.02
UPF1-211ENST00000600868 NAA38Q9BRA0 125 aaKnown RBP8.65□□□□□ -1.02
UPF1-211ENST00000600868 A0A1B0GX51 115 aa8.64□□□□□ -1.03
UPF1-211ENST00000600868 H3BUT2 72 aa8.64□□□□□ -1.03
UPF1-211ENST00000600868 FAM218AQ96MZ4 157 aa8.64□□□□□ -1.03
UPF1-211ENST00000600868 ZNF706Q9Y5V0 76 aaPredicted RBP8.64□□□□□ -1.03
UPF1-211ENST00000600868 PKHD1L1Q86WI1 4243 aa8.63□□□□□ -1.03
UPF1-211ENST00000600868 SNCGO76070 127 aa8.63□□□□□ -1.03
UPF1-211ENST00000600868 LYRM7Q5U5X0 104 aa8.62□□□□□ -1.03
UPF1-211ENST00000600868 CLEC2BQ92478 149 aa8.62□□□□□ -1.03
UPF1-211ENST00000600868 SPRR4Q96PI1 79 aa8.62□□□□□ -1.03
UPF1-211ENST00000600868 HERC2O95714 4834 aa8.62□□□□□ -1.03
UPF1-211ENST00000600868 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP8.6□□□□□ -1.03
UPF1-211ENST00000600868 ST20-AS1Q8NBB2 130 aa8.6□□□□□ -1.03
UPF1-211ENST00000600868 A0A1W2PPM0 123 aa8.59□□□□□ -1.03
UPF1-211ENST00000600868 LST1O00453 97 aa8.59□□□□□ -1.03
UPF1-211ENST00000600868 KRTAP1-4P0C5Y4 121 aa8.59□□□□□ -1.03
UPF1-211ENST00000600868 IGLV5-48A0A075B6I7 105 aa8.58□□□□□ -1.04
UPF1-211ENST00000600868 TRACP01848 142 aa8.58□□□□□ -1.04
UPF1-211ENST00000600868 LINC00483Q53H64 154 aa8.58□□□□□ -1.04
UPF1-211ENST00000600868 GAGE2AQ6NT46 116 aa8.58□□□□□ -1.04
UPF1-211ENST00000600868 Q6ZQY7 126 aa8.58□□□□□ -1.04
UPF1-211ENST00000600868 TRBV20-1A0A075B6N2 111 aa8.57□□□□□ -1.04
UPF1-211ENST00000600868 TCL1BO95988 128 aa8.57□□□□□ -1.04
UPF1-211ENST00000600868 FABP2P12104 132 aa8.57□□□□□ -1.04
UPF1-211ENST00000600868 SPRR1BP22528 89 aa8.57□□□□□ -1.04
UPF1-211ENST00000600868 FAM229BQ4G0N7 80 aa8.57□□□□□ -1.04
UPF1-211ENST00000600868 TEX49A0A1B0GTD5 131 aa8.56□□□□□ -1.04
UPF1-211ENST00000600868 LINC01547P58512 204 aaPredicted RBP8.56□□□□□ -1.04
UPF1-211ENST00000600868 ATXN8Q156A1 80 aa8.56□□□□□ -1.04
UPF1-211ENST00000600868 OCIAD2Q56VL3 154 aa8.56□□□□□ -1.04
UPF1-211ENST00000600868 DNAL4O96015 105 aa8.55□□□□□ -1.04
UPF1-211ENST00000600868 DEFB105AQ8NG35 78 aa8.55□□□□□ -1.04
UPF1-211ENST00000600868 ANAPC11Q9NYG5 84 aa8.55□□□□□ -1.04
UPF1-211ENST00000600868 Q8N377 158 aa8.54□□□□□ -1.04
UPF1-211ENST00000600868 PPDPFLQ8WWR9 84 aa8.54□□□□□ -1.04
UPF1-211ENST00000600868 GHRHP01286 108 aa8.53□□□□□ -1.04
UPF1-211ENST00000600868 LINC01600Q96MT4 127 aa8.53□□□□□ -1.04
UPF1-211ENST00000600868 H3BQ85 93 aa8.52□□□□□ -1.05
UPF1-211ENST00000600868 CRYGAP11844 174 aa8.52□□□□□ -1.05
UPF1-211ENST00000600868 ORMDL1Q9P0S3 153 aa8.52□□□□□ -1.05
UPF1-211ENST00000600868 FLG2Q5D862 2391 aaPredicted RBP8.51□□□□□ -1.05
UPF1-211ENST00000600868 A0A087X002 238 aa8.51□□□□□ -1.05
UPF1-211ENST00000600868 OXTP01178 125 aa8.51□□□□□ -1.05
UPF1-211ENST00000600868 SPCS1Q9Y6A9 102 aa8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 93.8 ms