RNA–Protein interactions for RNA: ENST00000600259.5

VRK3-220, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 572 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-220ENST00000600259 H3BRM9 83 aa3.35□□□□□ -1.87
VRK3-220ENST00000600259 ERC2-IT1O76042 136 aa3.35□□□□□ -1.87
VRK3-220ENST00000600259 SCGB1D1O95968 90 aa3.35□□□□□ -1.87
VRK3-220ENST00000600259 LINC00310P59036 64 aa3.35□□□□□ -1.87
VRK3-220ENST00000600259 KRTAP10-6P60371 365 aaPredicted RBP3.35□□□□□ -1.87
VRK3-220ENST00000600259 SSBP3-AS1Q7Z2R9 100 aa3.35□□□□□ -1.87
VRK3-220ENST00000600259 TRAPPC1Q9Y5R8 145 aa3.35□□□□□ -1.87
VRK3-220ENST00000600259 ZNF706Q9Y5V0 76 aaPredicted RBP3.35□□□□□ -1.87
VRK3-220ENST00000600259 C11orf86A6NJI1 115 aa3.34□□□□□ -1.87
VRK3-220ENST00000600259 COL5A1-AS1Q5SY13 56 aa3.34□□□□□ -1.87
VRK3-220ENST00000600259 URB1-AS1Q96HZ7 61 aa3.34□□□□□ -1.87
VRK3-220ENST00000600259 C20orf202A1L168 122 aa3.33□□□□□ -1.88
VRK3-220ENST00000600259 PRYO14603 147 aa3.33□□□□□ -1.88
VRK3-220ENST00000600259 SLC25A20O43772 301 aa3.33□□□□□ -1.88
VRK3-220ENST00000600259 VAMP8Q9BV40 100 aa3.33□□□□□ -1.88
VRK3-220ENST00000600259 A0A0U1RRA0 63 aa3.32□□□□□ -1.88
VRK3-220ENST00000600259 B5MCH6 92 aa3.32□□□□□ -1.88
VRK3-220ENST00000600259 CFC1BP0CG36 223 aa3.32□□□□□ -1.88
VRK3-220ENST00000600259 LINC00158P58513 81 aa3.32□□□□□ -1.88
VRK3-220ENST00000600259 MOBPQ13875 183 aa3.32□□□□□ -1.88
VRK3-220ENST00000600259 GAGE2AQ6NT46 116 aa3.32□□□□□ -1.88
VRK3-220ENST00000600259 Q9BRP9 147 aa3.32□□□□□ -1.88
VRK3-220ENST00000600259 UQCR10Q9UDW1 63 aa3.32□□□□□ -1.88
VRK3-220ENST00000600259 FLGP20930 4061 aaPredicted RBP3.32□□□□□ -1.88
VRK3-220ENST00000600259 TRBV10-3A0A0K0K1G6 114 aa3.31□□□□□ -1.88
VRK3-220ENST00000600259 SERF1AO75920 110 aa3.31□□□□□ -1.88
VRK3-220ENST00000600259 SMIM13P0DJ93 91 aa3.31□□□□□ -1.88
VRK3-220ENST00000600259 PMCHL1Q16048 86 aa3.31□□□□□ -1.88
VRK3-220ENST00000600259 PCOTHQ58A44 107 aa3.31□□□□□ -1.88
VRK3-220ENST00000600259 LCE3BQ5TA77 95 aa3.31□□□□□ -1.88
VRK3-220ENST00000600259 SFTA2Q6UW10 78 aa3.31□□□□□ -1.88
VRK3-220ENST00000600259 FA2HQ7L5A8 372 aa3.31□□□□□ -1.88
VRK3-220ENST00000600259 BAGE3Q86Y29 109 aa3.31□□□□□ -1.88
VRK3-220ENST00000600259 BOD1L2Q8IYS8 172 aa3.31□□□□□ -1.88
VRK3-220ENST00000600259 FAM19A2Q8N3H0 131 aa3.31□□□□□ -1.88
VRK3-220ENST00000600259 IGLV8-61A0A075B6I0 122 aa3.3□□□□□ -1.88
VRK3-220ENST00000600259 IGLV9-49A0A0B4J1Y8 123 aa3.3□□□□□ -1.88
VRK3-220ENST00000600259 LOC107984156A0A0G2JMH3 177 aa3.3□□□□□ -1.88
VRK3-220ENST00000600259 ETDCA0A1B0GVM5 59 aa3.3□□□□□ -1.88
VRK3-220ENST00000600259 TMEM223A0PJW6 202 aa3.3□□□□□ -1.88
VRK3-220ENST00000600259 NCR3O14931 201 aa3.3□□□□□ -1.88
VRK3-220ENST00000600259 PCP4P48539 62 aa3.3□□□□□ -1.88
VRK3-220ENST00000600259 TMEM170BQ5T4T1 132 aa3.3□□□□□ -1.88
VRK3-220ENST00000600259 PET117Q6UWS5 81 aa3.3□□□□□ -1.88
VRK3-220ENST00000600259 ARL17AQ8IVW1 177 aa3.3□□□□□ -1.88
VRK3-220ENST00000600259 NDUFA12Q9UI09 145 aa3.3□□□□□ -1.88
VRK3-220ENST00000600259 UBE2V1Q13404 147 aa3.29□□□□□ -1.88
VRK3-220ENST00000600259 SPATA45Q537H7 98 aa3.29□□□□□ -1.88
VRK3-220ENST00000600259 MIR7-3HGQ8N6C7 128 aa3.29□□□□□ -1.88
VRK3-220ENST00000600259 C18orf32Q8TCD1 76 aa3.29□□□□□ -1.88
VRK3-220ENST00000600259 PAM16Q9Y3D7 125 aa3.29□□□□□ -1.88
VRK3-220ENST00000600259 HBDP02042 147 aa3.28□□□□□ -1.88
VRK3-220ENST00000600259 Q6ZRX8 168 aa3.28□□□□□ -1.88
VRK3-220ENST00000600259 TRBV10-2A0A0K0K1G8 114 aa3.27□□□□□ -1.89
VRK3-220ENST00000600259 KRTAP9-7A8MTY7 169 aa3.27□□□□□ -1.89
VRK3-220ENST00000600259 C3orf79P0CE67 100 aa3.27□□□□□ -1.89
VRK3-220ENST00000600259 KRTDAPP60985 99 aa3.27□□□□□ -1.89
VRK3-220ENST00000600259 C21orf62-AS1Q17RA5 79 aa3.27□□□□□ -1.89
VRK3-220ENST00000600259 KRTAP19-4Q3LI73 84 aa3.27□□□□□ -1.89
VRK3-220ENST00000600259 CHTOPQ9Y3Y2 248 aaKnown RBP3.27□□□□□ -1.89
VRK3-220ENST00000600259 TRAV12-1A0A0B4J245 112 aa3.26□□□□□ -1.89
VRK3-220ENST00000600259 C9orf92A6NGG3 77 aa3.26□□□□□ -1.89
VRK3-220ENST00000600259 IGLV6-57P01721 117 aa3.26□□□□□ -1.89
VRK3-220ENST00000600259 HERV-K104P63124 156 aa3.26□□□□□ -1.89
VRK3-220ENST00000600259 ST20-AS1Q8NBB2 130 aa3.26□□□□□ -1.89
VRK3-220ENST00000600259 SVIPQ8NHG7 77 aa3.26□□□□□ -1.89
VRK3-220ENST00000600259 CHCHD1Q96BP2 118 aaKnown RBP3.26□□□□□ -1.89
VRK3-220ENST00000600259 PMCHL2Q9BQD1 86 aa3.26□□□□□ -1.89
VRK3-220ENST00000600259 HSBP1O75506 76 aa3.25□□□□□ -1.89
VRK3-220ENST00000600259 SPRR1BP22528 89 aa3.25□□□□□ -1.89
VRK3-220ENST00000600259 TSPEAR-AS2P59090 65 aa3.25□□□□□ -1.89
VRK3-220ENST00000600259 BATFQ16520 125 aa3.25□□□□□ -1.89
VRK3-220ENST00000600259 MEIG1Q5JSS6 88 aa3.25□□□□□ -1.89
VRK3-220ENST00000600259 C9orf153Q5TBE3 101 aa3.24□□□□□ -1.89
VRK3-220ENST00000600259 SOSTDC1Q6X4U4 206 aa3.24□□□□□ -1.89
VRK3-220ENST00000600259 IFI27L1Q96BM0 104 aa3.24□□□□□ -1.89
VRK3-220ENST00000600259 KRTAP9-9Q9BYP9 154 aa3.24□□□□□ -1.89
VRK3-220ENST00000600259 KRTAP9-4Q9BYQ2 154 aa3.24□□□□□ -1.89
VRK3-220ENST00000600259 MYMXA0A1B0GTQ4 84 aa3.23□□□□□ -1.89
VRK3-220ENST00000600259 SYS1-DBNDD2H3BUS1 97 aa3.23□□□□□ -1.89
VRK3-220ENST00000600259 K7ERU9 68 aa3.23□□□□□ -1.89
VRK3-220ENST00000600259 M0R2T5 61 aa3.23□□□□□ -1.89
VRK3-220ENST00000600259 TAX1BP3O14907 124 aa3.23□□□□□ -1.89
VRK3-220ENST00000600259 NDUFC2O95298 119 aa3.23□□□□□ -1.89
VRK3-220ENST00000600259 HINT1P49773 126 aaPredicted RBP3.23□□□□□ -1.89
VRK3-220ENST00000600259 BVES-AS1Q5T3Y7 98 aa3.23□□□□□ -1.89
VRK3-220ENST00000600259 SLC25A34Q6PIV7 304 aa3.23□□□□□ -1.89
VRK3-220ENST00000600259 SSPOA2VEC9 5147 aa3.23□□□□□ -1.89
VRK3-220ENST00000600259 USH2AO75445 5202 aa3.22□□□□□ -1.89
VRK3-220ENST00000600259 HSBP1L1C9JCN9 74 aa3.22□□□□□ -1.89
VRK3-220ENST00000600259 LEPROTO15243 131 aa3.22□□□□□ -1.89
VRK3-220ENST00000600259 LEPROTL1O95214 131 aa3.22□□□□□ -1.89
VRK3-220ENST00000600259 RPL37P61927 97 aaKnown RBP3.22□□□□□ -1.89
VRK3-220ENST00000600259 VAMP3Q15836 100 aa3.22□□□□□ -1.89
VRK3-220ENST00000600259 OCIAD2Q56VL3 154 aa3.22□□□□□ -1.89
VRK3-220ENST00000600259 C1orf195Q5TG92 126 aa3.22□□□□□ -1.89
VRK3-220ENST00000600259 Q5XG85 94 aa3.22□□□□□ -1.89
VRK3-220ENST00000600259 HRCT1Q6UXD1 115 aa3.22□□□□□ -1.89
VRK3-220ENST00000600259 LIMD2Q9BT23 127 aa3.22□□□□□ -1.89
VRK3-220ENST00000600259 MAP1LC3CQ9BXW4 147 aa3.22□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms