RNA–Protein interactions for RNA: ENST00000590588.5

ZNF540-209, Transcript of zinc finger protein 540, humanhuman

TSL 3

Gene ZNF540, Length 563 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-209ENST00000590588 IGKV3OR2-268A0A0C4DH90 116 aa6.59□□□□□ -1.35
ZNF540-209ENST00000590588 APOMO95445 188 aa6.59□□□□□ -1.35
ZNF540-209ENST00000590588 GAGE2BQ13066 116 aa6.59□□□□□ -1.35
ZNF540-209ENST00000590588 CHCHD10Q8WYQ3 142 aaPredicted RBP6.59□□□□□ -1.35
ZNF540-209ENST00000590588 LOC107984156A0A0G2JMH3 177 aa6.58□□□□□ -1.36
ZNF540-209ENST00000590588 H3BMG7 143 aa6.58□□□□□ -1.36
ZNF540-209ENST00000590588 MEIG1Q5JSS6 88 aa6.58□□□□□ -1.36
ZNF540-209ENST00000590588 CD164L2Q6UWJ8 174 aa6.58□□□□□ -1.36
ZNF540-209ENST00000590588 ARL17AQ8IVW1 177 aa6.58□□□□□ -1.36
ZNF540-209ENST00000590588 LINC00308Q8TCZ7 52 aa6.58□□□□□ -1.36
ZNF540-209ENST00000590588 KRTAP1-4P0C5Y4 121 aa6.57□□□□□ -1.36
ZNF540-209ENST00000590588 COX17Q14061 63 aa6.57□□□□□ -1.36
ZNF540-209ENST00000590588 PRO0461Q9UI25 63 aa6.57□□□□□ -1.36
ZNF540-209ENST00000590588 TRAV13-2A0A0B4J235 113 aa6.56□□□□□ -1.36
ZNF540-209ENST00000590588 LOC107984640A0A0U1RRK4 108 aa6.56□□□□□ -1.36
ZNF540-209ENST00000590588 PRSS2P07478 247 aa6.56□□□□□ -1.36
ZNF540-209ENST00000590588 SYCNQ0VAF6 134 aa6.56□□□□□ -1.36
ZNF540-209ENST00000590588 FOXI1Q12951 378 aa6.56□□□□□ -1.36
ZNF540-209ENST00000590588 ATXN8Q156A1 80 aa6.56□□□□□ -1.36
ZNF540-209ENST00000590588 C9orf116Q5BN46 136 aaPredicted RBP6.56□□□□□ -1.36
ZNF540-209ENST00000590588 ADAMTSL4-AS1Q5T5F5 129 aa6.56□□□□□ -1.36
ZNF540-209ENST00000590588 LINC00526Q96FQ7 95 aa6.56□□□□□ -1.36
ZNF540-209ENST00000590588 F8WDY8 70 aa6.55□□□□□ -1.36
ZNF540-209ENST00000590588 ZNF561-AS1K7EIQ3 104 aa6.55□□□□□ -1.36
ZNF540-209ENST00000590588 PHF5AQ7RTV0 110 aaKnown RBP6.55□□□□□ -1.36
ZNF540-209ENST00000590588 NAA38Q9BRA0 125 aaKnown RBP6.55□□□□□ -1.36
ZNF540-209ENST00000590588 H3BT86 120 aa6.54□□□□□ -1.36
ZNF540-209ENST00000590588 COX7A2LO14548 114 aa6.54□□□□□ -1.36
ZNF540-209ENST00000590588 LINC01547P58512 204 aaPredicted RBP6.54□□□□□ -1.36
ZNF540-209ENST00000590588 SCGB1C2P0DMR2 95 aa6.53□□□□□ -1.36
ZNF540-209ENST00000590588 PSMB2P49721 201 aa6.53□□□□□ -1.36
ZNF540-209ENST00000590588 Q1RN00 199 aa6.53□□□□□ -1.36
ZNF540-209ENST00000590588 CDIP1Q9H305 208 aa6.53□□□□□ -1.36
ZNF540-209ENST00000590588 NDUFC2O95298 119 aa6.52□□□□□ -1.37
ZNF540-209ENST00000590588 TCL1BO95988 128 aa6.52□□□□□ -1.37
ZNF540-209ENST00000590588 TEN1Q86WV5 123 aa6.52□□□□□ -1.37
ZNF540-209ENST00000590588 LST1O00453 97 aa6.51□□□□□ -1.37
ZNF540-209ENST00000590588 XCL1P47992 114 aa6.51□□□□□ -1.37
ZNF540-209ENST00000590588 PCP4P48539 62 aa6.51□□□□□ -1.37
ZNF540-209ENST00000590588 C6orf226Q5I0X4 101 aa6.51□□□□□ -1.37
ZNF540-209ENST00000590588 TRBV10-2A0A0K0K1G8 114 aa6.5□□□□□ -1.37
ZNF540-209ENST00000590588 TRIAP1O43715 76 aa6.5□□□□□ -1.37
ZNF540-209ENST00000590588 TRACP01848 142 aa6.5□□□□□ -1.37
ZNF540-209ENST00000590588 RPL28P46779 137 aaKnown RBP6.5□□□□□ -1.37
ZNF540-209ENST00000590588 PPDPFLQ8WWR9 84 aa6.5□□□□□ -1.37
ZNF540-209ENST00000590588 A0A1B0GX51 115 aa6.49□□□□□ -1.37
ZNF540-209ENST00000590588 SLC25A20O43772 301 aa6.49□□□□□ -1.37
ZNF540-209ENST00000590588 CKS1BP61024 79 aa6.49□□□□□ -1.37
ZNF540-209ENST00000590588 KIAA0087Q14695 138 aa6.49□□□□□ -1.37
ZNF540-209ENST00000590588 MIR7-3HGQ8N6C7 128 aa6.49□□□□□ -1.37
ZNF540-209ENST00000590588 H0YGX0 51 aa6.48□□□□□ -1.37
ZNF540-209ENST00000590588 MALP21145 153 aa6.48□□□□□ -1.37
ZNF540-209ENST00000590588 RPL18AQ02543 176 aaKnown RBP6.48□□□□□ -1.37
ZNF540-209ENST00000590588 TPRXLQ17RH7 258 aa6.48□□□□□ -1.37
ZNF540-209ENST00000590588 SOSTDC1Q6X4U4 206 aa6.48□□□□□ -1.37
ZNF540-209ENST00000590588 C5orf38Q86SI9 138 aa6.48□□□□□ -1.37
ZNF540-209ENST00000590588 SND1-IT1Q9HBX3 110 aa6.48□□□□□ -1.37
ZNF540-209ENST00000590588 TOMM7Q9P0U1 55 aa6.48□□□□□ -1.37
ZNF540-209ENST00000590588 LINC00158P58513 81 aa6.47□□□□□ -1.37
ZNF540-209ENST00000590588 ETDBQ3ZM63 59 aa6.47□□□□□ -1.37
ZNF540-209ENST00000590588 KRTAP11-1Q8IUC1 163 aa6.47□□□□□ -1.37
ZNF540-209ENST00000590588 ANKRD29Q8N6D5 301 aa6.47□□□□□ -1.37
ZNF540-209ENST00000590588 CAMK2N2Q96S95 79 aa6.47□□□□□ -1.37
ZNF540-209ENST00000590588 VPS25Q9BRG1 176 aa6.46□□□□□ -1.38
ZNF540-209ENST00000590588 C2orf48Q96LS8 159 aa6.45□□□□□ -1.38
ZNF540-209ENST00000590588 FAM240AA0A1B0GVK7 77 aa6.44□□□□□ -1.38
ZNF540-209ENST00000590588 C9JAW5 83 aa6.44□□□□□ -1.38
ZNF540-209ENST00000590588 CRYGAP11844 174 aa6.44□□□□□ -1.38
ZNF540-209ENST00000590588 SPAG11BQ08648 103 aa6.44□□□□□ -1.38
ZNF540-209ENST00000590588 DAND5Q8N907 189 aa6.44□□□□□ -1.38
ZNF540-209ENST00000590588 H3BQ85 93 aa6.43□□□□□ -1.38
ZNF540-209ENST00000590588 H7C2G1 150 aa6.43□□□□□ -1.38
ZNF540-209ENST00000590588 SCGB1A1P11684 91 aa6.43□□□□□ -1.38
ZNF540-209ENST00000590588 RNF151Q2KHN1 245 aa6.43□□□□□ -1.38
ZNF540-209ENST00000590588 TYMSOSQ8TAI1 123 aa6.43□□□□□ -1.38
ZNF540-209ENST00000590588 RETNLBQ9BQ08 111 aa6.43□□□□□ -1.38
ZNF540-209ENST00000590588 TMEM126AQ9H061 195 aa6.43□□□□□ -1.38
ZNF540-209ENST00000590588 IGLV7-46A0A075B6I9 117 aa6.42□□□□□ -1.38
ZNF540-209ENST00000590588 IGKV2-28A0A075B6P5 120 aa6.42□□□□□ -1.38
ZNF540-209ENST00000590588 FAM168BA1KXE4 195 aa6.42□□□□□ -1.38
ZNF540-209ENST00000590588 ZNF861PO60384 105 aa6.42□□□□□ -1.38
ZNF540-209ENST00000590588 IGKV2D-28P01615 120 aa6.42□□□□□ -1.38
ZNF540-209ENST00000590588 NPC2P61916 151 aa6.42□□□□□ -1.38
ZNF540-209ENST00000590588 UBE2BP63146 152 aa6.42□□□□□ -1.38
ZNF540-209ENST00000590588 C2orf82Q6UX34 121 aa6.42□□□□□ -1.38
ZNF540-209ENST00000590588 LINC00337Q8N6G1 96 aa6.42□□□□□ -1.38
ZNF540-209ENST00000590588 SNCGO76070 127 aa6.41□□□□□ -1.38
ZNF540-209ENST00000590588 ACYP1P07311 99 aa6.4□□□□□ -1.38
ZNF540-209ENST00000590588 PFN2P35080 140 aa6.4□□□□□ -1.38
ZNF540-209ENST00000590588 C21orf62-AS1Q17RA5 79 aa6.4□□□□□ -1.38
ZNF540-209ENST00000590588 FAM19A5Q7Z5A7 132 aaPredicted RBP6.4□□□□□ -1.38
ZNF540-209ENST00000590588 A0A087X002 238 aa6.39□□□□□ -1.39
ZNF540-209ENST00000590588 A0A0U1RRA0 63 aa6.39□□□□□ -1.39
ZNF540-209ENST00000590588 TRBV7-6A0A0J9YX20 115 aa6.38□□□□□ -1.39
ZNF540-209ENST00000590588 KRTAP9-7A8MTY7 169 aa6.38□□□□□ -1.39
ZNF540-209ENST00000590588 DNAL4O96015 105 aa6.38□□□□□ -1.39
ZNF540-209ENST00000590588 TLX1NBP0CAT3 122 aa6.37□□□□□ -1.39
ZNF540-209ENST00000590588 SMIM11BQ8TCY0 68 aa6.37□□□□□ -1.39
ZNF540-209ENST00000590588 CLEC2BQ92478 149 aa6.37□□□□□ -1.39
ZNF540-209ENST00000590588 LINC00167Q96N53 147 aa6.37□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms