RNA–Protein interactions for RNA: ENST00000583441.1

SMCHD1-209, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 657 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-209ENST00000583441 MT4P47944 62 aa-0.74□□□□□ -2.53
SMCHD1-209ENST00000583441 C20orf78Q9BR46 151 aa-0.74□□□□□ -2.53
SMCHD1-209ENST00000583441 SVEP1Q4LDE5 3571 aa-0.75□□□□□ -2.53
SMCHD1-209ENST00000583441 PTPN23Q9H3S7 1636 aa-0.75□□□□□ -2.53
SMCHD1-209ENST00000583441 KIF20BQ96Q89 1820 aa-0.75□□□□□ -2.53
SMCHD1-209ENST00000583441 GAFA1Q96PS6 74 aa-0.75□□□□□ -2.53
SMCHD1-209ENST00000583441 BCORQ6W2J9 1755 aa-0.75□□□□□ -2.53
SMCHD1-209ENST00000583441 TRANK1O15050 2925 aa-0.76□□□□□ -2.53
SMCHD1-209ENST00000583441 TROQ12816 1431 aaPredicted RBP-0.76□□□□□ -2.53
SMCHD1-209ENST00000583441 ATP7BP35670 1465 aa-0.76□□□□□ -2.53
SMCHD1-209ENST00000583441 LRRC9Q6ZRR7 1453 aa-0.76□□□□□ -2.53
SMCHD1-209ENST00000583441 ADAMTS12P58397 1594 aa-0.77□□□□□ -2.53
SMCHD1-209ENST00000583441 IQCF6A8MYZ5 107 aa-0.77□□□□□ -2.53
SMCHD1-209ENST00000583441 PYY3Q5JQD4 70 aa-0.77□□□□□ -2.53
SMCHD1-209ENST00000583441 LAMA5O15230 3695 aa-0.77□□□□□ -2.53
SMCHD1-209ENST00000583441 AKAP13Q12802 2813 aa-0.77□□□□□ -2.53
SMCHD1-209ENST00000583441 EPG5Q9HCE0 2579 aa-0.77□□□□□ -2.53
SMCHD1-209ENST00000583441 CICQ96RK0 1608 aaPredicted RBP-0.78□□□□□ -2.53
SMCHD1-209ENST00000583441 CEP162Q5TB80 1403 aa-0.78□□□□□ -2.53
SMCHD1-209ENST00000583441 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP-0.78□□□□□ -2.535e-7■■■■■ 50.9
SMCHD1-209ENST00000583441 PKD1L3Q7Z443 1732 aa-0.78□□□□□ -2.53
SMCHD1-209ENST00000583441 ALKQ9UM73 1620 aa-0.78□□□□□ -2.54
SMCHD1-209ENST00000583441 UBR3Q6ZT12 1888 aa-0.79□□□□□ -2.54
SMCHD1-209ENST00000583441 LRRC7Q96NW7 1537 aa-0.79□□□□□ -2.54
SMCHD1-209ENST00000583441 QSER1Q2KHR3 1735 aa-0.8□□□□□ -2.54
SMCHD1-209ENST00000583441 PREX1Q8TCU6 1659 aa-0.8□□□□□ -2.54
SMCHD1-209ENST00000583441 Q9H521 79 aa-0.8□□□□□ -2.54
SMCHD1-209ENST00000583441 NEXMIFQ5QGS0 1516 aa-0.8□□□□□ -2.54
SMCHD1-209ENST00000583441 RGPD8O14715 1765 aaPredicted RBP-0.8□□□□□ -2.54
SMCHD1-209ENST00000583441 RGPD5Q99666 1765 aa-0.8□□□□□ -2.54
SMCHD1-209ENST00000583441 MYMXA0A1B0GTQ4 84 aa-0.81□□□□□ -2.54
SMCHD1-209ENST00000583441 NDUFA3O95167 84 aa-0.81□□□□□ -2.54
SMCHD1-209ENST00000583441 ANKRD26Q9UPS8 1709 aa-0.81□□□□□ -2.54
SMCHD1-209ENST00000583441 MYH4Q9Y623 1939 aa-0.81□□□□□ -2.54
SMCHD1-209ENST00000583441 PLIN4Q96Q06 1357 aa-0.82□□□□□ -2.54
SMCHD1-209ENST00000583441 HIVEP1P15822 2718 aa-0.82□□□□□ -2.54
SMCHD1-209ENST00000583441 EPPK1P58107 5090 aaKnown RBP-0.82□□□□□ -2.54
SMCHD1-209ENST00000583441 USP9YO00507 2555 aaPredicted RBP-0.82□□□□□ -2.54
SMCHD1-209ENST00000583441 MYO3AQ8NEV4 1616 aa-0.82□□□□□ -2.54
SMCHD1-209ENST00000583441 CCNB3Q8WWL7 1395 aa-0.83□□□□□ -2.54
SMCHD1-209ENST00000583441 RNF213Q63HN8 5207 aa-0.83□□□□□ -2.54
SMCHD1-209ENST00000583441 SNRPFP62306 86 aaKnown RBP-0.83□□□□□ -2.54
SMCHD1-209ENST00000583441 V9GYS6 101 aa-0.83□□□□□ -2.54
SMCHD1-209ENST00000583441 PRRC2CQ9Y520 2896 aaKnown RBP-0.83□□□□□ -2.54
SMCHD1-209ENST00000583441 TRAV21A0A0B4J279 112 aa-0.84□□□□□ -2.54
SMCHD1-209ENST00000583441 NDUFB1O75438 58 aa-0.84□□□□□ -2.54
SMCHD1-209ENST00000583441 PKD1P98161 4303 aa-0.84□□□□□ -2.54
SMCHD1-209ENST00000583441 SPTBN4Q9H254 2564 aa-0.84□□□□□ -2.54
SMCHD1-209ENST00000583441 RGPD2P0DJD1 1756 aa-0.85□□□□□ -2.55
SMCHD1-209ENST00000583441 C3orf79P0CE67 100 aa-0.85□□□□□ -2.55
SMCHD1-209ENST00000583441 LINC00643Q86TS7 51 aa-0.85□□□□□ -2.55
SMCHD1-209ENST00000583441 WFDC9Q8NEX5 89 aa-0.85□□□□□ -2.55
SMCHD1-209ENST00000583441 SPG11Q96JI7 2443 aa-0.85□□□□□ -2.55
SMCHD1-209ENST00000583441 STARD9Q9P2P6 4700 aa-0.85□□□□□ -2.55
SMCHD1-209ENST00000583441 KNL1Q8NG31 2342 aa-0.86□□□□□ -2.55
SMCHD1-209ENST00000583441 PVALEFA0A1B0GWK0 134 aa-0.86□□□□□ -2.55
SMCHD1-209ENST00000583441 S100A16Q96FQ6 103 aaKnown RBP-0.86□□□□□ -2.55
SMCHD1-209ENST00000583441 RABAC1Q9UI14 185 aa-0.86□□□□□ -2.55
SMCHD1-209ENST00000583441 ANKHD1Q8IWZ3 2542 aaKnown RBP-0.87□□□□□ -2.55
SMCHD1-209ENST00000583441 AKAP12Q02952 1782 aa-0.87□□□□□ -2.55
SMCHD1-209ENST00000583441 K7EP34 96 aa-0.87□□□□□ -2.55
SMCHD1-209ENST00000583441 HECTD1Q9ULT8 2610 aa-0.87□□□□□ -2.55
SMCHD1-209ENST00000583441 SONP18583 2426 aaKnown RBP-0.88□□□□□ -2.55
SMCHD1-209ENST00000583441 CEBPZOSA8MTT3 80 aa-0.88□□□□□ -2.55
SMCHD1-209ENST00000583441 ACYP1P07311 99 aa-0.88□□□□□ -2.55
SMCHD1-209ENST00000583441 NBASA2RRP1 2371 aa-0.88□□□□□ -2.55
SMCHD1-209ENST00000583441 ITPR3Q14573 2671 aa-0.88□□□□□ -2.55
SMCHD1-209ENST00000583441 FASNP49327 2511 aaKnown RBP-0.88□□□□□ -2.55
SMCHD1-209ENST00000583441 TACC2O95359 2948 aa-0.89□□□□□ -2.55
SMCHD1-209ENST00000583441 PRO3102Q9H379 93 aa-0.89□□□□□ -2.55
SMCHD1-209ENST00000583441 TNRC18O15417 2968 aaPredicted RBP-0.89□□□□□ -2.55
SMCHD1-209ENST00000583441 TEP1Q99973 2627 aaKnown RBP-0.89□□□□□ -2.55
SMCHD1-209ENST00000583441 RGPD1P0DJD0 1748 aa-0.89□□□□□ -2.55
SMCHD1-209ENST00000583441 RYR2Q92736 4967 aa-0.9□□□□□ -2.55
SMCHD1-209ENST00000583441 ABCC3O15438 1527 aa-0.91□□□□□ -2.56
SMCHD1-209ENST00000583441 MYO18BQ8IUG5 2567 aa-0.92□□□□□ -2.56
SMCHD1-209ENST00000583441 MT1AP04731 61 aa-0.92□□□□□ -2.56
SMCHD1-209ENST00000583441 PDE4DIPQ5VU43 2346 aa-0.92□□□□□ -2.56
SMCHD1-209ENST00000583441 HTTP42858 3142 aa-0.92□□□□□ -2.56
SMCHD1-209ENST00000583441 C9orf92A6NGG3 77 aa-0.93□□□□□ -2.56
SMCHD1-209ENST00000583441 TNRC6CQ9HCJ0 1690 aaKnown RBP-0.94□□□□□ -2.56
SMCHD1-209ENST00000583441 UBR1Q8IWV7 1749 aa-0.94□□□□□ -2.56
SMCHD1-209ENST00000583441 LINC00158P58513 81 aa-0.94□□□□□ -2.56
SMCHD1-209ENST00000583441 SPRR2FQ96RM1 72 aa-0.94□□□□□ -2.56
SMCHD1-209ENST00000583441 BIRC6Q9NR09 4857 aa-0.94□□□□□ -2.56
SMCHD1-209ENST00000583441 URB2Q14146 1524 aaKnown RBP-0.94□□□□□ -2.56
SMCHD1-209ENST00000583441 SUPT6HQ7KZ85 1726 aaKnown RBP-0.95□□□□□ -2.56
SMCHD1-209ENST00000583441 USP32Q8NFA0 1604 aa-0.95□□□□□ -2.56
SMCHD1-209ENST00000583441 H3BNG1 76 aa-0.95□□□□□ -2.56
SMCHD1-209ENST00000583441 TIAM2Q8IVF5 1701 aa-0.95□□□□□ -2.56
SMCHD1-209ENST00000583441 TTC37Q6PGP7 1564 aa-0.96□□□□□ -2.56
SMCHD1-209ENST00000583441 CEP170BQ9Y4F5 1589 aaPredicted RBP-0.96□□□□□ -2.56
SMCHD1-209ENST00000583441 RGPD4Q7Z3J3 1758 aa-0.96□□□□□ -2.56
SMCHD1-209ENST00000583441 DNAH6Q9C0G6 4158 aa-0.96□□□□□ -2.56
SMCHD1-209ENST00000583441 KANTRA0A1W2PQU2 76 aa-0.96□□□□□ -2.56
SMCHD1-209ENST00000583441 C4AP0C0L4 1744 aa-0.96□□□□□ -2.56
SMCHD1-209ENST00000583441 C4BP0C0L5 1744 aa-0.96□□□□□ -2.56
SMCHD1-209ENST00000583441 NWD1Q149M9 1564 aa-0.96□□□□□ -2.56
SMCHD1-209ENST00000583441 NCOA2Q15596 1464 aa-0.97□□□□□ -2.56
SMCHD1-209ENST00000583441 IFI27P40305 119 aaPredicted RBP-0.97□□□□□ -2.56
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms