RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 IGKV2D-29A0A075B6S2 120 aaPredicted RBP3.02□□□□□ -1.93
VPS35-205ENST00000563984 TRBV6-4A0A1B0GX49 114 aa3.02□□□□□ -1.93
VPS35-205ENST00000563984 MRPL33O75394 65 aaKnown RBP3.02□□□□□ -1.93
VPS35-205ENST00000563984 GIG44P09565 113 aaPredicted RBP3.02□□□□□ -1.93
VPS35-205ENST00000563984 PATE1Q8WXA2 126 aa3.02□□□□□ -1.93
VPS35-205ENST00000563984 Q9Y3F1 56 aa3.02□□□□□ -1.93
VPS35-205ENST00000563984 ASPMQ8IZT6 3477 aa3.02□□□□□ -1.93
VPS35-205ENST00000563984 VPS13AQ96RL7 3174 aa3.01□□□□□ -1.93
VPS35-205ENST00000563984 DEFB116Q30KQ4 102 aa3.01□□□□□ -1.93
VPS35-205ENST00000563984 PIGYQ3MUY2 71 aa3.01□□□□□ -1.93
VPS35-205ENST00000563984 SPINK9Q5DT21 86 aa3.01□□□□□ -1.93
VPS35-205ENST00000563984 ASH1LQ9NR48 2969 aaKnown RBP3.01□□□□□ -1.93
VPS35-205ENST00000563984 USP9XQ93008 2570 aaPredicted RBP3.01□□□□□ -1.93
VPS35-205ENST00000563984 ZFYVE26Q68DK2 2539 aa3□□□□□ -1.93
VPS35-205ENST00000563984 TRGV1A0A0A0MS02 117 aa3□□□□□ -1.93
VPS35-205ENST00000563984 A0A1B0GU69 56 aa3□□□□□ -1.93
VPS35-205ENST00000563984 PRB2P02812 416 aaPredicted RBP3□□□□□ -1.93
VPS35-205ENST00000563984 LINC00158P58513 81 aa3□□□□□ -1.93
VPS35-205ENST00000563984 ST20-AS1Q8NBB2 130 aa3□□□□□ -1.93
VPS35-205ENST00000563984 A0A087WTM6 91 aa2.99□□□□□ -1.93
VPS35-205ENST00000563984 IGKV2-40A0A087WW87 121 aaPredicted RBP2.99□□□□□ -1.93
VPS35-205ENST00000563984 J3QKU1 62 aa2.99□□□□□ -1.93
VPS35-205ENST00000563984 IGKV2D-40P01614 121 aaPredicted RBP2.99□□□□□ -1.93
VPS35-205ENST00000563984 PRCDQ00LT1 54 aa2.99□□□□□ -1.93
VPS35-205ENST00000563984 TNCP24821 2201 aa2.99□□□□□ -1.93
VPS35-205ENST00000563984 PRB1P04280 392 aa2.98□□□□□ -1.93
VPS35-205ENST00000563984 POLR2KP53803 58 aaKnown RBP2.98□□□□□ -1.93
VPS35-205ENST00000563984 LINC00472Q9H8W2 130 aa2.98□□□□□ -1.93
VPS35-205ENST00000563984 COL4A2P08572 1712 aa2.98□□□□□ -1.93
VPS35-205ENST00000563984 FRYLO94915 3013 aa2.98□□□□□ -1.93
VPS35-205ENST00000563984 OTOGLQ3ZCN5 2332 aa2.97□□□□□ -1.93
VPS35-205ENST00000563984 DEFB131BA0A096LNP1 70 aa2.97□□□□□ -1.93
VPS35-205ENST00000563984 HELZ2Q9BYK8 2649 aaKnown RBP2.97□□□□□ -1.93
VPS35-205ENST00000563984 CACNA1DQ01668 2161 aa2.97□□□□□ -1.93
VPS35-205ENST00000563984 ZFHX3Q15911 3703 aa2.96□□□□□ -1.93
VPS35-205ENST00000563984 ZNF462Q96JM2 2506 aa2.96□□□□□ -1.93
VPS35-205ENST00000563984 Q6ZQY7 126 aa2.96□□□□□ -1.94
VPS35-205ENST00000563984 PRR14LQ5THK1 2151 aa2.95□□□□□ -1.94
VPS35-205ENST00000563984 MYO18BQ8IUG5 2567 aa2.95□□□□□ -1.94
VPS35-205ENST00000563984 BPTFQ12830 3046 aa2.95□□□□□ -1.94
VPS35-205ENST00000563984 NBDYA0A0U1RRE5 68 aa2.95□□□□□ -1.94
VPS35-205ENST00000563984 FAM168BA1KXE4 195 aa2.95□□□□□ -1.94
VPS35-205ENST00000563984 RPL37AP61513 92 aaKnown RBP2.95□□□□□ -1.94
VPS35-205ENST00000563984 PSORS1C2Q9UIG4 136 aa2.95□□□□□ -1.94
VPS35-205ENST00000563984 FRYQ5TBA9 3013 aa2.95□□□□□ -1.94
VPS35-205ENST00000563984 SPEGQ15772 3267 aa2.94□□□□□ -1.94
VPS35-205ENST00000563984 NBEAQ8NFP9 2946 aa2.94□□□□□ -1.94
VPS35-205ENST00000563984 PIEZO2Q9H5I5 2752 aa2.94□□□□□ -1.94
VPS35-205ENST00000563984 DSPP15924 2871 aaKnown RBP2.94□□□□□ -1.94
VPS35-205ENST00000563984 IGKV2-28A0A075B6P5 120 aa2.94□□□□□ -1.94
VPS35-205ENST00000563984 ZZEF1O43149 2961 aa2.94□□□□□ -1.94
VPS35-205ENST00000563984 IGKV2D-28P01615 120 aa2.94□□□□□ -1.94
VPS35-205ENST00000563984 PRO2289Q9P1D8 64 aa2.94□□□□□ -1.94
VPS35-205ENST00000563984 ASXL3Q9C0F0 2248 aa2.94□□□□□ -1.94
VPS35-205ENST00000563984 CEP295Q9C0D2 2601 aa2.94□□□□□ -1.94
VPS35-205ENST00000563984 ALPK2Q86TB3 2170 aa2.94□□□□□ -1.94
VPS35-205ENST00000563984 SHANK1Q9Y566 2161 aa2.94□□□□□ -1.94
VPS35-205ENST00000563984 CNOT1A5YKK6 2376 aaKnown RBP2.94□□□□□ -1.94
VPS35-205ENST00000563984 A0A1W2PNN7 141 aa2.93□□□□□ -1.94
VPS35-205ENST00000563984 RPL39P62891 51 aaKnown RBP2.93□□□□□ -1.94
VPS35-205ENST00000563984 C5orf56Q8N8D9 126 aa2.93□□□□□ -1.94
VPS35-205ENST00000563984 RPL39LQ96EH5 51 aaKnown RBP2.93□□□□□ -1.94
VPS35-205ENST00000563984 Q96NJ1 140 aa2.93□□□□□ -1.94
VPS35-205ENST00000563984 ANAPC11Q9NYG5 84 aa2.93□□□□□ -1.94
VPS35-205ENST00000563984 M0R2N4 97 aa2.92□□□□□ -1.94
VPS35-205ENST00000563984 LINC00575Q6W349 94 aa2.92□□□□□ -1.94
VPS35-205ENST00000563984 KRTAP11-1Q8IUC1 163 aa2.92□□□□□ -1.94
VPS35-205ENST00000563984 Q8IZM0 81 aa2.92□□□□□ -1.94
VPS35-205ENST00000563984 DEFB124Q8NES8 71 aa2.92□□□□□ -1.94
VPS35-205ENST00000563984 TEP1Q99973 2627 aaKnown RBP2.92□□□□□ -1.94
VPS35-205ENST00000563984 HECTD1Q9ULT8 2610 aa2.92□□□□□ -1.94
VPS35-205ENST00000563984 IGSF10Q6WRI0 2623 aa2.91□□□□□ -1.94
VPS35-205ENST00000563984 IGF2RP11717 2491 aa2.91□□□□□ -1.94
VPS35-205ENST00000563984 H3BRN7 92 aa2.91□□□□□ -1.94
VPS35-205ENST00000563984 ACYP2P14621 99 aa2.91□□□□□ -1.94
VPS35-205ENST00000563984 CD52P31358 61 aa2.91□□□□□ -1.94
VPS35-205ENST00000563984 PRB3Q04118 309 aaPredicted RBP2.91□□□□□ -1.94
VPS35-205ENST00000563984 Q8N9L7 120 aa2.91□□□□□ -1.94
VPS35-205ENST00000563984 ABCA12Q86UK0 2595 aa2.91□□□□□ -1.94
VPS35-205ENST00000563984 COL27A1Q8IZC6 1860 aaPredicted RBP2.9□□□□□ -1.94
VPS35-205ENST00000563984 SMG1Q96Q15 3661 aaKnown RBP2.9□□□□□ -1.95
VPS35-205ENST00000563984 CDKN2A-AS1Q9UH64 79 aa2.9□□□□□ -1.95
VPS35-205ENST00000563984 DMXL2Q8TDJ6 3036 aa2.9□□□□□ -1.95
VPS35-205ENST00000563984 PTPN13Q12923 2485 aa2.9□□□□□ -1.95
VPS35-205ENST00000563984 DOPEY1Q5JWR5 2465 aa2.9□□□□□ -1.95
VPS35-205ENST00000563984 IGKV2D-24A0A075B6R9 120 aa2.89□□□□□ -1.95
VPS35-205ENST00000563984 HRES1P13985 223 aa2.89□□□□□ -1.95
VPS35-205ENST00000563984 LINC00315P59091 139 aa2.89□□□□□ -1.95
VPS35-205ENST00000563984 TENM4Q6N022 2769 aa2.89□□□□□ -1.95
VPS35-205ENST00000563984 CCL19Q99731 98 aa2.89□□□□□ -1.95
VPS35-205ENST00000563984 SDK1Q7Z5N4 2213 aa2.89□□□□□ -1.95
VPS35-205ENST00000563984 SPTA1P02549 2419 aa2.89□□□□□ -1.95
VPS35-205ENST00000563984 URB1O60287 2271 aaKnown RBP2.89□□□□□ -1.95
VPS35-205ENST00000563984 ITPR1Q14643 2758 aa2.89□□□□□ -1.95
VPS35-205ENST00000563984 SEC16AO15027 2179 aa2.88□□□□□ -1.95
VPS35-205ENST00000563984 SPAG17Q6Q759 2223 aa2.88□□□□□ -1.95
VPS35-205ENST00000563984 CREBBPQ92793 2442 aa2.88□□□□□ -1.95
VPS35-205ENST00000563984 R4GN34 69 aa2.88□□□□□ -1.95
VPS35-205ENST00000563984 LAMA5O15230 3695 aa2.88□□□□□ -1.95
VPS35-205ENST00000563984 TEX15Q9BXT5 2789 aa2.88□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms