RNA–Protein interactions for RNA: ENST00000558911.1

LRRC28-212, Transcript of leucine rich repeat containing 28, humanhuman

TSL 3

Gene LRRC28, Length 490 nt, Biotype processed transcript, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-212ENST00000558911 C20orf78Q9BR46 151 aa1.62□□□□□ -2.15
LRRC28-212ENST00000558911 MANBALQ9NQG1 85 aa1.62□□□□□ -2.15
LRRC28-212ENST00000558911 ANKRD50Q9ULJ7 1429 aa1.62□□□□□ -2.15
LRRC28-212ENST00000558911 ARFGEF3Q5TH69 2177 aa1.62□□□□□ -2.15
LRRC28-212ENST00000558911 KIF20BQ96Q89 1820 aa1.61□□□□□ -2.15
LRRC28-212ENST00000558911 LOC101927531A0A1B0GV80 90 aa1.61□□□□□ -2.15
LRRC28-212ENST00000558911 CYB5AP00167 134 aa1.61□□□□□ -2.15
LRRC28-212ENST00000558911 TRAPPC2P0DI81 140 aa1.61□□□□□ -2.15
LRRC28-212ENST00000558911 TRAPPC2BP0DI82 140 aa1.61□□□□□ -2.15
LRRC28-212ENST00000558911 LINC00322Q6ZN03 302 aaPredicted RBP1.61□□□□□ -2.15
LRRC28-212ENST00000558911 C20orf197Q8N268 126 aa1.61□□□□□ -2.15
LRRC28-212ENST00000558911 CYSTM1Q9H1C7 97 aa1.61□□□□□ -2.15
LRRC28-212ENST00000558911 IQGAP3Q86VI3 1631 aa1.61□□□□□ -2.15
LRRC28-212ENST00000558911 SPTBP11277 2137 aa1.61□□□□□ -2.15
LRRC28-212ENST00000558911 MYH4Q9Y623 1939 aa1.6□□□□□ -2.15
LRRC28-212ENST00000558911 CEP162Q5TB80 1403 aa1.6□□□□□ -2.15
LRRC28-212ENST00000558911 HRNRQ86YZ3 2850 aaPredicted RBP1.6□□□□□ -2.15
LRRC28-212ENST00000558911 TRBV7-3A0A075B6L6 115 aa1.6□□□□□ -2.15
LRRC28-212ENST00000558911 TRGV2A0A075B6R0 118 aa1.6□□□□□ -2.15
LRRC28-212ENST00000558911 IGLV3-32A0A0A0MS00 114 aa1.6□□□□□ -2.15
LRRC28-212ENST00000558911 CLPSL1A2RUU4 121 aa1.6□□□□□ -2.15
LRRC28-212ENST00000558911 HIGD1CA8MV81 97 aa1.6□□□□□ -2.15
LRRC28-212ENST00000558911 INE1O15225 51 aa1.6□□□□□ -2.15
LRRC28-212ENST00000558911 MRPS14O60783 128 aaKnown RBP1.6□□□□□ -2.15
LRRC28-212ENST00000558911 APOC3P02656 99 aa1.6□□□□□ -2.15
LRRC28-212ENST00000558911 ZNF625Q96I27 306 aaPredicted RBP1.6□□□□□ -2.15
LRRC28-212ENST00000558911 MGST2Q99735 147 aa1.6□□□□□ -2.15
LRRC28-212ENST00000558911 HCRTO43612 131 aa1.59□□□□□ -2.15
LRRC28-212ENST00000558911 SSBP1Q04837 148 aaKnown RBP1.59□□□□□ -2.15
LRRC28-212ENST00000558911 ZNF56Q15929 161 aa1.59□□□□□ -2.15
LRRC28-212ENST00000558911 TDRG1Q3Y452 100 aa1.59□□□□□ -2.15
LRRC28-212ENST00000558911 SPATA45Q537H7 98 aa1.59□□□□□ -2.15
LRRC28-212ENST00000558911 SFTA2Q6UW10 78 aa1.59□□□□□ -2.15
LRRC28-212ENST00000558911 SERP2Q8N6R1 65 aa1.59□□□□□ -2.15
LRRC28-212ENST00000558911 S100A16Q96FQ6 103 aaKnown RBP1.59□□□□□ -2.15
LRRC28-212ENST00000558911 TRGV9Q99603 122 aa1.59□□□□□ -2.15
LRRC28-212ENST00000558911 CACFD1Q9UGQ2 172 aa1.59□□□□□ -2.15
LRRC28-212ENST00000558911 SIPA1L3O60292 1781 aaPredicted RBP1.59□□□□□ -2.16
LRRC28-212ENST00000558911 F5P12259 2224 aa1.59□□□□□ -2.16
LRRC28-212ENST00000558911 KNTC1P50748 2209 aa1.58□□□□□ -2.16
LRRC28-212ENST00000558911 TRBV6-7A0A0A0MS04 114 aa1.58□□□□□ -2.16
LRRC28-212ENST00000558911 A0A0G2JND7 137 aa1.58□□□□□ -2.16
LRRC28-212ENST00000558911 NBDYA0A0U1RRE5 68 aa1.58□□□□□ -2.16
LRRC28-212ENST00000558911 IGKV2-29A2NJV5 120 aaPredicted RBP1.58□□□□□ -2.16
LRRC28-212ENST00000558911 CHKB-CPT1BH3BT56 60 aa1.58□□□□□ -2.16
LRRC28-212ENST00000558911 SYS1-DBNDD2H3BUS1 97 aa1.58□□□□□ -2.16
LRRC28-212ENST00000558911 J3QRE1 110 aa1.58□□□□□ -2.16
LRRC28-212ENST00000558911 IGKV4-1P06312 121 aa1.58□□□□□ -2.16
LRRC28-212ENST00000558911 CCL3L1P16619 93 aa1.58□□□□□ -2.16
LRRC28-212ENST00000558911 EDDM3BP56851 147 aa1.58□□□□□ -2.16
LRRC28-212ENST00000558911 UBE2D3P61077 147 aa1.58□□□□□ -2.16
LRRC28-212ENST00000558911 UBE2D2P62837 147 aa1.58□□□□□ -2.16
LRRC28-212ENST00000558911 FXYD3Q14802 87 aa1.58□□□□□ -2.16
LRRC28-212ENST00000558911 Q5VV11 94 aa1.58□□□□□ -2.16
LRRC28-212ENST00000558911 Q8N6K4 173 aa1.58□□□□□ -2.16
LRRC28-212ENST00000558911 FAM167A-AS1Q96KT0 104 aa1.58□□□□□ -2.16
LRRC28-212ENST00000558911 UQCR10Q9UDW1 63 aa1.58□□□□□ -2.16
LRRC28-212ENST00000558911 DNAH3Q8TD57 4116 aa1.58□□□□□ -2.16
LRRC28-212ENST00000558911 ROS1P08922 2347 aa1.58□□□□□ -2.16
LRRC28-212ENST00000558911 PDCD11Q14690 1871 aaKnown RBP1.58□□□□□ -2.16
LRRC28-212ENST00000558911 MED12Q93074 2177 aa1.58□□□□□ -2.16
LRRC28-212ENST00000558911 TRAV22A0A0B4J277 110 aa1.57□□□□□ -2.16
LRRC28-212ENST00000558911 IGKV3D-7A0A0C4DH55 119 aa1.57□□□□□ -2.16
LRRC28-212ENST00000558911 IGKV3OR2-268A0A0C4DH90 116 aa1.57□□□□□ -2.16
LRRC28-212ENST00000558911 M0R2N4 97 aa1.57□□□□□ -2.16
LRRC28-212ENST00000558911 NDUFC1O43677 76 aa1.57□□□□□ -2.16
LRRC28-212ENST00000558911 COX7B2Q8TF08 81 aa1.57□□□□□ -2.16
LRRC28-212ENST00000558911 NXT2Q9NPJ8 142 aaKnown RBP1.57□□□□□ -2.16
LRRC28-212ENST00000558911 NDUFA4L2Q9NRX3 87 aa1.57□□□□□ -2.16
LRRC28-212ENST00000558911 PRO1854Q9UHT4 67 aa1.57□□□□□ -2.16
LRRC28-212ENST00000558911 SNURFQ9Y675 71 aa1.57□□□□□ -2.16
LRRC28-212ENST00000558911 TET1Q8NFU7 2136 aa1.57□□□□□ -2.16
LRRC28-212ENST00000558911 EDC4Q6P2E9 1401 aaKnown RBP1.57□□□□□ -2.16
LRRC28-212ENST00000558911 LOC110117498A0A087WWA1 95 aa1.56□□□□□ -2.16
LRRC28-212ENST00000558911 FXYD1O00168 92 aa1.56□□□□□ -2.16
LRRC28-212ENST00000558911 PPP1R17O96001 155 aa1.56□□□□□ -2.16
LRRC28-212ENST00000558911 ELOF1P60002 83 aaKnown RBP1.56□□□□□ -2.16
LRRC28-212ENST00000558911 DEFB103AP81534 67 aa1.56□□□□□ -2.16
LRRC28-212ENST00000558911 GDF5OSQ5U4N7 250 aa1.56□□□□□ -2.16
LRRC28-212ENST00000558911 ALKAL2Q6UX46 152 aa1.56□□□□□ -2.16
LRRC28-212ENST00000558911 ZNF720Q7Z2F6 126 aa1.56□□□□□ -2.16
LRRC28-212ENST00000558911 C5orf56Q8N8D9 126 aa1.56□□□□□ -2.16
LRRC28-212ENST00000558911 S100A13Q99584 98 aa1.56□□□□□ -2.16
LRRC28-212ENST00000558911 DYNLRB1Q9NP97 96 aa1.56□□□□□ -2.16
LRRC28-212ENST00000558911 DOCK11Q5JSL3 2073 aa1.55□□□□□ -2.16
LRRC28-212ENST00000558911 PLXNB2O15031 1838 aa1.55□□□□□ -2.16
LRRC28-212ENST00000558911 IGLC7A0M8Q6 106 aa1.55□□□□□ -2.16
LRRC28-212ENST00000558911 H7BZZ5 65 aa1.55□□□□□ -2.16
LRRC28-212ENST00000558911 COX6CP09669 75 aa1.55□□□□□ -2.16
LRRC28-212ENST00000558911 FXYD4P59646 89 aa1.55□□□□□ -2.16
LRRC28-212ENST00000558911 C6orf52Q5T4I8 152 aa1.55□□□□□ -2.16
LRRC28-212ENST00000558911 FAM74A4Q5TZK3 123 aa1.55□□□□□ -2.16
LRRC28-212ENST00000558911 XAF1Q6GPH4 301 aa1.55□□□□□ -2.16
LRRC28-212ENST00000558911 VMO1Q7Z5L0 202 aa1.55□□□□□ -2.16
LRRC28-212ENST00000558911 OBSCN-AS1Q96MR7 158 aa1.55□□□□□ -2.16
LRRC28-212ENST00000558911 BPESC1Q9GZL8 116 aa1.55□□□□□ -2.16
LRRC28-212ENST00000558911 MED9Q9NWA0 146 aa1.55□□□□□ -2.16
LRRC28-212ENST00000558911 LENEPQ9Y5L5 61 aa1.55□□□□□ -2.16
LRRC28-212ENST00000558911 PLIN4Q96Q06 1357 aa1.55□□□□□ -2.16
LRRC28-212ENST00000558911 LAMA4Q16363 1823 aa1.54□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms