RNA–Protein interactions for RNA: ENST00000557507.1

CCDC88C-214, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 429 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-214ENST00000557507 LINC00308Q8TCZ7 52 aa4.96□□□□□ -1.62
CCDC88C-214ENST00000557507 LITAFQ99732 161 aa4.96□□□□□ -1.62
CCDC88C-214ENST00000557507 KRTAP4-6Q9BYQ5 205 aa4.96□□□□□ -1.62
CCDC88C-214ENST00000557507 PKIGQ9Y2B9 76 aa4.96□□□□□ -1.62
CCDC88C-214ENST00000557507 LOC107984156A0A0G2JMH3 177 aa4.95□□□□□ -1.62
CCDC88C-214ENST00000557507 A0A0U1RQV1 116 aa4.95□□□□□ -1.62
CCDC88C-214ENST00000557507 F8W1H4 67 aa4.95□□□□□ -1.62
CCDC88C-214ENST00000557507 SPAG11BQ08648 103 aa4.95□□□□□ -1.62
CCDC88C-214ENST00000557507 SYCNQ0VAF6 134 aa4.95□□□□□ -1.62
CCDC88C-214ENST00000557507 ARL17AQ8IVW1 177 aa4.95□□□□□ -1.62
CCDC88C-214ENST00000557507 CBY1Q9Y3M2 126 aa4.95□□□□□ -1.62
CCDC88C-214ENST00000557507 SNCGO76070 127 aa4.94□□□□□ -1.62
CCDC88C-214ENST00000557507 GAGE2BQ13066 116 aa4.94□□□□□ -1.62
CCDC88C-214ENST00000557507 PRR4Q16378 134 aa4.94□□□□□ -1.62
CCDC88C-214ENST00000557507 C4orf48Q5BLP8 95 aa4.94□□□□□ -1.62
CCDC88C-214ENST00000557507 C1orf137Q5JT78 98 aa4.94□□□□□ -1.62
CCDC88C-214ENST00000557507 ADAMTSL4-AS1Q5T5F5 129 aa4.94□□□□□ -1.62
CCDC88C-214ENST00000557507 PHF5AQ7RTV0 110 aaKnown RBP4.94□□□□□ -1.62
CCDC88C-214ENST00000557507 MIR7-3HGQ8N6C7 128 aa4.94□□□□□ -1.62
CCDC88C-214ENST00000557507 TRBV30A0A0K0K1B3 111 aa4.93□□□□□ -1.62
CCDC88C-214ENST00000557507 LOC107984640A0A0U1RRK4 108 aa4.93□□□□□ -1.62
CCDC88C-214ENST00000557507 TSPAN13O95857 204 aa4.93□□□□□ -1.62
CCDC88C-214ENST00000557507 PFN2P35080 140 aa4.93□□□□□ -1.62
CCDC88C-214ENST00000557507 ATXN8Q156A1 80 aa4.93□□□□□ -1.62
CCDC88C-214ENST00000557507 C9orf116Q5BN46 136 aaPredicted RBP4.93□□□□□ -1.62
CCDC88C-214ENST00000557507 C2orf48Q96LS8 159 aa4.93□□□□□ -1.62
CCDC88C-214ENST00000557507 SND1-IT1Q9HBX3 110 aa4.93□□□□□ -1.62
CCDC88C-214ENST00000557507 A0A0U1RRA0 63 aa4.92□□□□□ -1.62
CCDC88C-214ENST00000557507 J3QR89 54 aa4.92□□□□□ -1.62
CCDC88C-214ENST00000557507 IGLV7-43P04211 117 aa4.92□□□□□ -1.62
CCDC88C-214ENST00000557507 KRTAP1-4P0C5Y4 121 aa4.92□□□□□ -1.62
CCDC88C-214ENST00000557507 KRTAP11-1Q8IUC1 163 aa4.92□□□□□ -1.62
CCDC88C-214ENST00000557507 DIRC1Q969H9 104 aa4.92□□□□□ -1.62
CCDC88C-214ENST00000557507 H0Y9J4 135 aa4.91□□□□□ -1.62
CCDC88C-214ENST00000557507 H7C2G1 150 aa4.91□□□□□ -1.62
CCDC88C-214ENST00000557507 NDUFC2O95298 119 aa4.91□□□□□ -1.62
CCDC88C-214ENST00000557507 RPL13AP40429 203 aaKnown RBP4.91□□□□□ -1.62
CCDC88C-214ENST00000557507 NPC2P61916 151 aa4.91□□□□□ -1.62
CCDC88C-214ENST00000557507 CAMK2N2Q96S95 79 aa4.91□□□□□ -1.62
CCDC88C-214ENST00000557507 IGLV1-50A0A075B6I6 118 aa4.9□□□□□ -1.63
CCDC88C-214ENST00000557507 K7ERU9 68 aa4.9□□□□□ -1.63
CCDC88C-214ENST00000557507 RPL18AQ02543 176 aaKnown RBP4.9□□□□□ -1.63
CCDC88C-214ENST00000557507 KIAA0087Q14695 138 aa4.9□□□□□ -1.63
CCDC88C-214ENST00000557507 DAND5Q8N907 189 aa4.9□□□□□ -1.63
CCDC88C-214ENST00000557507 NAA38Q9BRA0 125 aaKnown RBP4.9□□□□□ -1.63
CCDC88C-214ENST00000557507 H0YGX0 51 aa4.89□□□□□ -1.63
CCDC88C-214ENST00000557507 MUC17Q685J3 4493 aa4.89□□□□□ -1.63
CCDC88C-214ENST00000557507 FAM168BA1KXE4 195 aa4.88□□□□□ -1.63
CCDC88C-214ENST00000557507 H3BMG7 143 aa4.88□□□□□ -1.63
CCDC88C-214ENST00000557507 RNF151Q2KHN1 245 aa4.88□□□□□ -1.63
CCDC88C-214ENST00000557507 C2orf82Q6UX34 121 aa4.88□□□□□ -1.63
CCDC88C-214ENST00000557507 OR13C6PQ8NH95 151 aa4.88□□□□□ -1.63
CCDC88C-214ENST00000557507 TMEM126AQ9H061 195 aa4.88□□□□□ -1.63
CCDC88C-214ENST00000557507 M0QXV9 152 aa4.87□□□□□ -1.63
CCDC88C-214ENST00000557507 GHRHP01286 108 aa4.87□□□□□ -1.63
CCDC88C-214ENST00000557507 RPL28P46779 137 aaKnown RBP4.87□□□□□ -1.63
CCDC88C-214ENST00000557507 S100A7L2Q5SY68 101 aa4.87□□□□□ -1.63
CCDC88C-214ENST00000557507 TRBV10-2A0A0K0K1G8 114 aa4.86□□□□□ -1.63
CCDC88C-214ENST00000557507 TRIAP1O43715 76 aa4.86□□□□□ -1.63
CCDC88C-214ENST00000557507 DNAL4O96015 105 aa4.86□□□□□ -1.63
CCDC88C-214ENST00000557507 UNQ6190/PRO20217Q6UXQ8 127 aa4.86□□□□□ -1.63
CCDC88C-214ENST00000557507 FAM19A5Q7Z5A7 132 aaPredicted RBP4.86□□□□□ -1.63
CCDC88C-214ENST00000557507 KRTAP7-1Q8IUC3 87 aa4.86□□□□□ -1.63
CCDC88C-214ENST00000557507 NDUFC2-KCTD14E9PQ53 114 aa4.85□□□□□ -1.63
CCDC88C-214ENST00000557507 H3BQ85 93 aa4.85□□□□□ -1.63
CCDC88C-214ENST00000557507 H3BT86 120 aa4.85□□□□□ -1.63
CCDC88C-214ENST00000557507 TCL1BO95988 128 aa4.85□□□□□ -1.63
CCDC88C-214ENST00000557507 TRACP01848 142 aa4.85□□□□□ -1.63
CCDC88C-214ENST00000557507 SOSTDC1Q6X4U4 206 aa4.85□□□□□ -1.63
CCDC88C-214ENST00000557507 A0A1B0GX51 115 aa4.84□□□□□ -1.63
CCDC88C-214ENST00000557507 C9JAW5 83 aa4.84□□□□□ -1.63
CCDC88C-214ENST00000557507 LST1O00453 97 aa4.84□□□□□ -1.63
CCDC88C-214ENST00000557507 SLC25A20O43772 301 aa4.84□□□□□ -1.63
CCDC88C-214ENST00000557507 OCIAD2Q56VL3 154 aa4.83□□□□□ -1.64
CCDC88C-214ENST00000557507 C10orf25Q5T742 122 aa4.83□□□□□ -1.64
CCDC88C-214ENST00000557507 ANKRD29Q8N6D5 301 aa4.83□□□□□ -1.64
CCDC88C-214ENST00000557507 C6orf48Q9UBA6 75 aa4.83□□□□□ -1.64
CCDC88C-214ENST00000557507 IGKV2-28A0A075B6P5 120 aa4.82□□□□□ -1.64
CCDC88C-214ENST00000557507 M0R378 163 aa4.82□□□□□ -1.64
CCDC88C-214ENST00000557507 IGKV2D-28P01615 120 aa4.82□□□□□ -1.64
CCDC88C-214ENST00000557507 TLX1NBP0CAT3 122 aa4.82□□□□□ -1.64
CCDC88C-214ENST00000557507 TEN1Q86WV5 123 aa4.82□□□□□ -1.64
CCDC88C-214ENST00000557507 LINC00337Q8N6G1 96 aa4.82□□□□□ -1.64
CCDC88C-214ENST00000557507 NKAPP1Q8N9T2 125 aa4.82□□□□□ -1.64
CCDC88C-214ENST00000557507 A0A087X002 238 aa4.81□□□□□ -1.64
CCDC88C-214ENST00000557507 EIF4EBP3O60516 100 aaPredicted RBP4.81□□□□□ -1.64
CCDC88C-214ENST00000557507 UBE2BP63146 152 aa4.81□□□□□ -1.64
CCDC88C-214ENST00000557507 GAGE2EQ4V326 116 aa4.81□□□□□ -1.64
CCDC88C-214ENST00000557507 SMIM11BQ8TCY0 68 aa4.81□□□□□ -1.64
CCDC88C-214ENST00000557507 PPDPFLQ8WWR9 84 aa4.81□□□□□ -1.64
CCDC88C-214ENST00000557507 GAGE2DQ9UEU5 116 aa4.81□□□□□ -1.64
CCDC88C-214ENST00000557507 FSIP2Q5CZC0 6907 aa4.81□□□□□ -1.64
CCDC88C-214ENST00000557507 TRBV7-6A0A0J9YX20 115 aa4.8□□□□□ -1.64
CCDC88C-214ENST00000557507 ETDBQ3ZM63 59 aa4.8□□□□□ -1.64
CCDC88C-214ENST00000557507 PRO0461Q9UI25 63 aa4.8□□□□□ -1.64
CCDC88C-214ENST00000557507 NCR3O14931 201 aa4.79□□□□□ -1.64
CCDC88C-214ENST00000557507 CLEC2BQ92478 149 aa4.79□□□□□ -1.64
CCDC88C-214ENST00000557507 RETNLBQ9BQ08 111 aa4.79□□□□□ -1.64
CCDC88C-214ENST00000557507 TRAV23DV6A0A075B6W5 121 aa4.78□□□□□ -1.64
CCDC88C-214ENST00000557507 ZNF861PO60384 105 aa4.78□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 68.1 ms