RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	TRIO	O75962	3097 aa		3.14	□□□□□ -1.91
SYNE2-223	ENST00000557005	ROS1	P08922	2347 aa		3.14	□□□□□ -1.91
SYNE2-223	ENST00000557005	SPRR4	Q96PI1	79 aa		3.14	□□□□□ -1.91
SYNE2-223	ENST00000557005	CSMD1	Q96PZ7	3565 aa		3.14	□□□□□ -1.91
SYNE2-223	ENST00000557005	CACNA1G	O43497	2377 aa		3.14	□□□□□ -1.91
SYNE2-223	ENST00000557005	PLCE1	Q9P212	2302 aa		3.13	□□□□□ -1.91
SYNE2-223	ENST00000557005	BSN	Q9UPA5	3926 aa		3.13	□□□□□ -1.91
SYNE2-223	ENST00000557005	NCOR1	O75376	2440 aa		3.13	□□□□□ -1.91
SYNE2-223	ENST00000557005	LCA10	Q71F78	164 aa		3.13	□□□□□ -1.91
SYNE2-223	ENST00000557005	APC2	O95996	2303 aa		3.13	□□□□□ -1.91
SYNE2-223	ENST00000557005	SPTBN2	O15020	2390 aa		3.12	□□□□□ -1.91
SYNE2-223	ENST00000557005	PRAC1	Q96KF2	57 aa		3.11	□□□□□ -1.91
SYNE2-223	ENST00000557005	COL6A6	A6NMZ7	2263 aa		3.11	□□□□□ -1.91
SYNE2-223	ENST00000557005	IGLV7-46	A0A075B6I9	117 aa		3.11	□□□□□ -1.91
SYNE2-223	ENST00000557005	AKAP9	Q99996	3911 aa		3.11	□□□□□ -1.91
SYNE2-223	ENST00000557005		Q8N9P0	234 aa	Predicted RBP	3.11	□□□□□ -1.91
SYNE2-223	ENST00000557005	MMP24-AS1	A0A0U1RRL7	71 aa		3.11	□□□□□ -1.91
SYNE2-223	ENST00000557005		K7EIL1	84 aa		3.11	□□□□□ -1.91
SYNE2-223	ENST00000557005	CR1	P17927	2039 aa		3.1	□□□□□ -1.91
SYNE2-223	ENST00000557005	SPINK7	P58062	85 aa		3.1	□□□□□ -1.91
SYNE2-223	ENST00000557005	KRTAP26-1	Q6PEX3	210 aa		3.1	□□□□□ -1.91
SYNE2-223	ENST00000557005	HRES1	P13985	223 aa		3.1	□□□□□ -1.91
SYNE2-223	ENST00000557005	PCNX1	Q96RV3	2341 aa		3.1	□□□□□ -1.91
SYNE2-223	ENST00000557005	C9orf92	A6NGG3	77 aa		3.09	□□□□□ -1.91
SYNE2-223	ENST00000557005	UNC79	Q9P2D8	2635 aa		3.09	□□□□□ -1.91
SYNE2-223	ENST00000557005	MAP1B	P46821	2468 aa	Known RBP	3.09	□□□□□ -1.92
SYNE2-223	ENST00000557005	UQCR11	O14957	56 aa		3.09	□□□□□ -1.92
SYNE2-223	ENST00000557005	SPINT4	Q6UDR6	99 aa		3.09	□□□□□ -1.92
SYNE2-223	ENST00000557005	DOPEY2	Q9Y3R5	2298 aa		3.08	□□□□□ -1.92
SYNE2-223	ENST00000557005	RP1L1	Q8IWN7	2480 aa	Predicted RBP	3.08	□□□□□ -1.92
SYNE2-223	ENST00000557005		Q8N1X5	172 aa		3.08	□□□□□ -1.92
SYNE2-223	ENST00000557005	PSORS1C2	Q9UIG4	136 aa		3.08	□□□□□ -1.92
SYNE2-223	ENST00000557005	APLN	Q9ULZ1	77 aa		3.08	□□□□□ -1.92
SYNE2-223	ENST00000557005	SSBP3-AS1	Q7Z2R9	100 aa		3.08	□□□□□ -1.92
SYNE2-223	ENST00000557005	PRR26	Q8N8Z3	221 aa		3.08	□□□□□ -1.92
SYNE2-223	ENST00000557005	TYMSOS	Q8TAI1	123 aa		3.08	□□□□□ -1.92
SYNE2-223	ENST00000557005	LINC01558	Q9Y6Z2	57 aa		3.08	□□□□□ -1.92
SYNE2-223	ENST00000557005	FAM229A	H3BQW9	127 aa		3.08	□□□□□ -1.92
SYNE2-223	ENST00000557005	CACNA1B	Q00975	2339 aa		3.08	□□□□□ -1.92
SYNE2-223	ENST00000557005	SPRR1A	P35321	89 aa		3.07	□□□□□ -1.92
SYNE2-223	ENST00000557005	C9orf163	Q8N9P6	203 aa		3.07	□□□□□ -1.92
SYNE2-223	ENST00000557005	ZNF861P	O60384	105 aa		3.07	□□□□□ -1.92
SYNE2-223	ENST00000557005	AFDN-AS1	Q9Y6Z5	254 aa	Predicted RBP	3.06	□□□□□ -1.92
SYNE2-223	ENST00000557005	ZFHX2	Q9C0A1	2572 aa	Predicted RBP	3.06	□□□□□ -1.92
SYNE2-223	ENST00000557005		A0A087WTM6	91 aa		3.06	□□□□□ -1.92
SYNE2-223	ENST00000557005	VPS13A	Q96RL7	3174 aa		3.06	□□□□□ -1.92
SYNE2-223	ENST00000557005	WDFY4	Q6ZS81	3184 aa		3.06	□□□□□ -1.92
SYNE2-223	ENST00000557005	IGLV7-43	P04211	117 aa		3.06	□□□□□ -1.92
SYNE2-223	ENST00000557005	CNOT1	A5YKK6	2376 aa	Known RBP	3.06	□□□□□ -1.92
SYNE2-223	ENST00000557005	LAMA5	O15230	3695 aa		3.05	□□□□□ -1.92
SYNE2-223	ENST00000557005	TNP2	Q05952	138 aa		3.05	□□□□□ -1.92
SYNE2-223	ENST00000557005		A8MU10	97 aa		3.05	□□□□□ -1.92
SYNE2-223	ENST00000557005	LINC00472	Q9H8W2	130 aa		3.05	□□□□□ -1.92
SYNE2-223	ENST00000557005	CUL9	Q8IWT3	2517 aa		3.05	□□□□□ -1.92
SYNE2-223	ENST00000557005	SPTBN1	Q01082	2364 aa	Known RBP	3.04	□□□□□ -1.92
SYNE2-223	ENST00000557005	ZCCHC13	Q8WW36	166 aa	Known RBP	3.04	□□□□□ -1.92
SYNE2-223	ENST00000557005	ZZEF1	O43149	2961 aa		3.04	□□□□□ -1.92
SYNE2-223	ENST00000557005	PRUNE2	Q8WUY3	3088 aa		3.04	□□□□□ -1.92
SYNE2-223	ENST00000557005	KRTAP4-16	G5E9R7	235 aa	Predicted RBP	3.04	□□□□□ -1.92
SYNE2-223	ENST00000557005	CFAP54	Q96N23	3096 aa		3.03	□□□□□ -1.92
SYNE2-223	ENST00000557005	PLA2G1B	P04054	148 aa	Known RBP	3.03	□□□□□ -1.92
SYNE2-223	ENST00000557005	EP300	Q09472	2414 aa	Predicted RBP	3.03	□□□□□ -1.93
SYNE2-223	ENST00000557005	FRYL	O94915	3013 aa		3.02	□□□□□ -1.93
SYNE2-223	ENST00000557005	CSAG1	Q6PB30	78 aa		3.02	□□□□□ -1.93
SYNE2-223	ENST00000557005	KRTAP7-1	Q8IUC3	87 aa		3.02	□□□□□ -1.93
SYNE2-223	ENST00000557005	TPR	P12270	2363 aa	Known RBP	3.02	□□□□□ -1.93
SYNE2-223	ENST00000557005	SPTA1	P02549	2419 aa		3.02	□□□□□ -1.93
SYNE2-223	ENST00000557005		H3BS24	57 aa		3.02	□□□□□ -1.93
SYNE2-223	ENST00000557005	KRTAP1-5	Q9BYS1	174 aa		3.02	□□□□□ -1.93
SYNE2-223	ENST00000557005	KRTAP29-1	A8MX34	341 aa	Predicted RBP	3.01	□□□□□ -1.93
SYNE2-223	ENST00000557005		Q5W150	140 aa		3.01	□□□□□ -1.93
SYNE2-223	ENST00000557005	KRTAP11-1	Q8IUC1	163 aa		3.01	□□□□□ -1.93
SYNE2-223	ENST00000557005		A0A0D9SG42	100 aa		3.01	□□□□□ -1.93
SYNE2-223	ENST00000557005	OTOGL	Q3ZCN5	2332 aa		3.01	□□□□□ -1.93
SYNE2-223	ENST00000557005		A6NN06	94 aa		3.01	□□□□□ -1.93
SYNE2-223	ENST00000557005	ANKHD1	Q8IWZ3	2542 aa	Known RBP	3.01	□□□□□ -1.93
SYNE2-223	ENST00000557005	LCE6A	A0A183	80 aa		3.01	□□□□□ -1.93
SYNE2-223	ENST00000557005	VPS13C	Q709C8	3753 aa		3.01	□□□□□ -1.93
SYNE2-223	ENST00000557005	ACACA	Q13085	2346 aa		3	□□□□□ -1.93
SYNE2-223	ENST00000557005	ABCA2	Q9BZC7	2435 aa		3	□□□□□ -1.93
SYNE2-223	ENST00000557005	KRTAP17-1	Q9BYP8	105 aa		3	□□□□□ -1.93
SYNE2-223	ENST00000557005	PRPF8	Q6P2Q9	2335 aa	Known RBP eCLIP	3	□□□□□ -1.93
SYNE2-223	ENST00000557005	SVEP1	Q4LDE5	3571 aa		3	□□□□□ -1.93
SYNE2-223	ENST00000557005	NBPF19	A0A087WUL8	3843 aa		3	□□□□□ -1.93
SYNE2-223	ENST00000557005	LINC01554	Q52M75	96 aa		3	□□□□□ -1.93
SYNE2-223	ENST00000557005	LINC00304	Q8N9R0	145 aa		3	□□□□□ -1.93
SYNE2-223	ENST00000557005	CFAP47	Q6ZTR5	3102 aa		2.99	□□□□□ -1.93
SYNE2-223	ENST00000557005	PANO1	I0J062	215 aa		2.99	□□□□□ -1.93
SYNE2-223	ENST00000557005	PKD1L2	Q7Z442	2459 aa		2.99	□□□□□ -1.93
SYNE2-223	ENST00000557005		A0A087X002	238 aa		2.98	□□□□□ -1.93
SYNE2-223	ENST00000557005	NOTCH2NL	Q7Z3S9	236 aa		2.98	□□□□□ -1.93
SYNE2-223	ENST00000557005	PIEZO2	Q9H5I5	2752 aa		2.98	□□□□□ -1.93
SYNE2-223	ENST00000557005	SPRR1B	P22528	89 aa		2.98	□□□□□ -1.93
SYNE2-223	ENST00000557005		Q6ZR54	194 aa		2.98	□□□□□ -1.93
SYNE2-223	ENST00000557005	LINC00483	Q53H64	154 aa		2.97	□□□□□ -1.93
SYNE2-223	ENST00000557005	CRIPT	Q9P021	101 aa		2.97	□□□□□ -1.93
SYNE2-223	ENST00000557005	SORL1	Q92673	2214 aa		2.97	□□□□□ -1.93
SYNE2-223	ENST00000557005	SMR3B	P02814	79 aa	Predicted RBP	2.97	□□□□□ -1.93
SYNE2-223	ENST00000557005	ADM2	Q7Z4H4	148 aa		2.96	□□□□□ -1.93
SYNE2-223	ENST00000557005	CHD8	Q9HCK8	2581 aa		2.96	□□□□□ -1.94

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