RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 TRBV6-8A0A0A6YYG3 113 aa1.8□□□□□ -2.12
LIMA1-208ENST00000551691 C17orf112F2Z3M2 114 aa1.8□□□□□ -2.12
LIMA1-208ENST00000551691 LSM3P62310 102 aaKnown RBP1.8□□□□□ -2.12
LIMA1-208ENST00000551691 S100A12P80511 92 aa1.8□□□□□ -2.12
LIMA1-208ENST00000551691 COX6B2Q6YFQ2 88 aa1.8□□□□□ -2.12
LIMA1-208ENST00000551691 TMEM229BQ8NBD8 167 aa1.8□□□□□ -2.12
LIMA1-208ENST00000551691 AP1S3Q96PC3 154 aa1.8□□□□□ -2.12
LIMA1-208ENST00000551691 OTORQ9NRC9 128 aa1.8□□□□□ -2.12
LIMA1-208ENST00000551691 GSKIPQ9P0R6 139 aa1.8□□□□□ -2.12
LIMA1-208ENST00000551691 BORCS7-ASMTA0A0B4J1R7 106 aa1.79□□□□□ -2.12
LIMA1-208ENST00000551691 TRAV1-2A0A0B4J238 106 aa1.79□□□□□ -2.12
LIMA1-208ENST00000551691 IGKV3OR2-268A0A0C4DH90 116 aa1.79□□□□□ -2.12
LIMA1-208ENST00000551691 K7ERJ3 54 aa1.79□□□□□ -2.12
LIMA1-208ENST00000551691 PDCD5O14737 125 aa1.79□□□□□ -2.12
LIMA1-208ENST00000551691 MT2AP02795 61 aa1.79□□□□□ -2.12
LIMA1-208ENST00000551691 MT1FP04733 61 aa1.79□□□□□ -2.12
LIMA1-208ENST00000551691 NMBP08949 121 aa1.79□□□□□ -2.12
LIMA1-208ENST00000551691 PYYP10082 97 aa1.79□□□□□ -2.12
LIMA1-208ENST00000551691 RRAS2P62070 204 aaPredicted RBP1.79□□□□□ -2.12
LIMA1-208ENST00000551691 RPS28P62857 69 aaKnown RBP1.79□□□□□ -2.12
LIMA1-208ENST00000551691 C2orf82Q6UX34 121 aa1.79□□□□□ -2.12
LIMA1-208ENST00000551691 HRCT1Q6UXD1 115 aa1.79□□□□□ -2.12
LIMA1-208ENST00000551691 COA5Q86WW8 74 aa1.79□□□□□ -2.12
LIMA1-208ENST00000551691 SFT2D1Q8WV19 159 aa1.79□□□□□ -2.12
LIMA1-208ENST00000551691 LINC00474Q9P2X8 69 aa1.79□□□□□ -2.12
LIMA1-208ENST00000551691 TRAV13-1A0A0B4J241 112 aa1.78□□□□□ -2.12
LIMA1-208ENST00000551691 F6UZH7 168 aa1.78□□□□□ -2.12
LIMA1-208ENST00000551691 UBE2D3P61077 147 aa1.78□□□□□ -2.12
LIMA1-208ENST00000551691 UBE2D2P62837 147 aa1.78□□□□□ -2.12
LIMA1-208ENST00000551691 MRPS36P82909 103 aaKnown RBP1.78□□□□□ -2.12
LIMA1-208ENST00000551691 Q1T7F1 81 aa1.78□□□□□ -2.12
LIMA1-208ENST00000551691 Q6AWC8 147 aa1.78□□□□□ -2.12
LIMA1-208ENST00000551691 TSKUQ8WUA8 353 aa1.78□□□□□ -2.12
LIMA1-208ENST00000551691 KRTAP2-1Q9BYU5 128 aa1.78□□□□□ -2.12
LIMA1-208ENST00000551691 IGHV1-58A0A0C4DH39 117 aa1.77□□□□□ -2.13
LIMA1-208ENST00000551691 H3BMG7 143 aa1.77□□□□□ -2.13
LIMA1-208ENST00000551691 DPM2O94777 84 aa1.77□□□□□ -2.13
LIMA1-208ENST00000551691 RNASE3P12724 160 aaKnown RBP1.77□□□□□ -2.13
LIMA1-208ENST00000551691 FAM74A4Q5TZK3 123 aa1.77□□□□□ -2.13
LIMA1-208ENST00000551691 C10orf113Q5VZT2 155 aa1.77□□□□□ -2.13
LIMA1-208ENST00000551691 FP248Q71RG6 208 aaPredicted RBP1.77□□□□□ -2.13
LIMA1-208ENST00000551691 CARD19Q96LW7 228 aa1.77□□□□□ -2.13
LIMA1-208ENST00000551691 PRELID3AQ96N28 172 aa1.77□□□□□ -2.13
LIMA1-208ENST00000551691 LINC00846Q9NV44 126 aa1.77□□□□□ -2.13
LIMA1-208ENST00000551691 COPZ2Q9P299 210 aa1.77□□□□□ -2.13
LIMA1-208ENST00000551691 TRBV7-3A0A075B6L6 115 aa1.76□□□□□ -2.13
LIMA1-208ENST00000551691 GVQW2A0A096LPI5 108 aaPredicted RBP1.76□□□□□ -2.13
LIMA1-208ENST00000551691 RBAKDNA6NC62 111 aa1.76□□□□□ -2.13
LIMA1-208ENST00000551691 ARPC5O15511 151 aa1.76□□□□□ -2.13
LIMA1-208ENST00000551691 TPT1P13693 172 aaKnown RBP1.76□□□□□ -2.13
LIMA1-208ENST00000551691 TCTE3Q8IZS6 198 aa1.76□□□□□ -2.13
LIMA1-208ENST00000551691 NPVFQ9HCQ7 196 aa1.76□□□□□ -2.13
LIMA1-208ENST00000551691 COMMD3Q9UBI1 195 aa1.76□□□□□ -2.13
LIMA1-208ENST00000551691 TPRKBQ9Y3C4 175 aa1.76□□□□□ -2.13
LIMA1-208ENST00000551691 MUC19Q7Z5P9 8384 aa1.75□□□□□ -2.13
LIMA1-208ENST00000551691 TRAV12-1A0A0B4J245 112 aa1.75□□□□□ -2.13
LIMA1-208ENST00000551691 TRAV21A0A0B4J279 112 aa1.75□□□□□ -2.13
LIMA1-208ENST00000551691 TRBV6-5A0A0K0K1A5 114 aa1.75□□□□□ -2.13
LIMA1-208ENST00000551691 LOC107984640A0A0U1RRK4 108 aa1.75□□□□□ -2.13
LIMA1-208ENST00000551691 A0A1B0GX51 115 aa1.75□□□□□ -2.13
LIMA1-208ENST00000551691 KRTAP10-10P60014 251 aa1.75□□□□□ -2.13
LIMA1-208ENST00000551691 CKS1BP61024 79 aa1.75□□□□□ -2.13
LIMA1-208ENST00000551691 MIC13Q5XKP0 118 aa1.75□□□□□ -2.13
LIMA1-208ENST00000551691 BRK1Q8WUW1 75 aa1.75□□□□□ -2.13
LIMA1-208ENST00000551691 RAB37Q96AX2 223 aa1.75□□□□□ -2.13
LIMA1-208ENST00000551691 MGST2Q99735 147 aa1.75□□□□□ -2.13
LIMA1-208ENST00000551691 NAA60Q9H7X0 242 aa1.75□□□□□ -2.13
LIMA1-208ENST00000551691 CCDC160A6NGH7 325 aa1.74□□□□□ -2.13
LIMA1-208ENST00000551691 J3QR89 54 aa1.74□□□□□ -2.13
LIMA1-208ENST00000551691 CD3DP04234 171 aa1.74□□□□□ -2.13
LIMA1-208ENST00000551691 TEX261Q6UWH6 196 aa1.74□□□□□ -2.13
LIMA1-208ENST00000551691 SNX29P2Q8IUI4 249 aa1.74□□□□□ -2.13
LIMA1-208ENST00000551691 S100A16Q96FQ6 103 aaKnown RBP1.74□□□□□ -2.13
LIMA1-208ENST00000551691 HYLS1Q96M11 299 aa1.74□□□□□ -2.13
LIMA1-208ENST00000551691 SNURFQ9Y675 71 aa1.74□□□□□ -2.13
LIMA1-208ENST00000551691 TRBV27A0A0K0K1C4 114 aa1.73□□□□□ -2.13
LIMA1-208ENST00000551691 hDV103S1A0JD37 113 aa1.73□□□□□ -2.13
LIMA1-208ENST00000551691 ERC2-IT1O76042 136 aa1.73□□□□□ -2.13
LIMA1-208ENST00000551691 FABP4P15090 132 aa1.73□□□□□ -2.13
LIMA1-208ENST00000551691 S100A10P60903 97 aa1.73□□□□□ -2.13
LIMA1-208ENST00000551691 FAM74A1Q5RGS3 127 aa1.73□□□□□ -2.13
LIMA1-208ENST00000551691 AQP10Q96PS8 301 aa1.73□□□□□ -2.13
LIMA1-208ENST00000551691 HSPB8Q9UJY1 196 aa1.73□□□□□ -2.13
LIMA1-208ENST00000551691 UBE2D4Q9Y2X8 147 aa1.73□□□□□ -2.13
LIMA1-208ENST00000551691 TRBV25-1A0A075B6N4 114 aa1.72□□□□□ -2.13
LIMA1-208ENST00000551691 IGKV2D-26A0A0A0MRZ7 120 aa1.72□□□□□ -2.13
LIMA1-208ENST00000551691 TRBV7-6A0A0J9YX20 115 aa1.72□□□□□ -2.13
LIMA1-208ENST00000551691 TRBV6-1A0A0K0K1D8 114 aa1.72□□□□□ -2.13
LIMA1-208ENST00000551691 C9JAW5 83 aa1.72□□□□□ -2.13
LIMA1-208ENST00000551691 GNGT1P63211 74 aa1.72□□□□□ -2.13
LIMA1-208ENST00000551691 TEN1Q86WV5 123 aa1.72□□□□□ -2.13
LIMA1-208ENST00000551691 C8orf59Q8N0T1 100 aaPredicted RBP1.72□□□□□ -2.13
LIMA1-208ENST00000551691 FAM167A-AS1Q96KT0 104 aa1.72□□□□□ -2.13
LIMA1-208ENST00000551691 PFDN5Q99471 154 aa1.72□□□□□ -2.13
LIMA1-208ENST00000551691 NMES1Q9C002 83 aa1.72□□□□□ -2.13
LIMA1-208ENST00000551691 PSENENQ9NZ42 101 aa1.72□□□□□ -2.13
LIMA1-208ENST00000551691 TMEM14CQ9P0S9 112 aa1.72□□□□□ -2.13
LIMA1-208ENST00000551691 DSTQ03001 7570 aaKnown RBP1.72□□□□□ -2.13
LIMA1-208ENST00000551691 IGHV1-24A0A0C4DH33 117 aa1.71□□□□□ -2.14
LIMA1-208ENST00000551691 TRBV10-1A0A0K0K1A3 114 aa1.71□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms