RNA–Protein interactions for RNA: ENST00000546588.1

VPS29-203, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,059 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-203ENST00000546588 Q9HAA7 133 aa5.58□□□□□ -1.52
VPS29-203ENST00000546588 NDUFA12Q9UI09 145 aa5.58□□□□□ -1.52
VPS29-203ENST00000546588 IGLV9-49A0A0B4J1Y8 123 aa5.57□□□□□ -1.52
VPS29-203ENST00000546588 CLPSL2Q6UWE3 100 aa5.57□□□□□ -1.52
VPS29-203ENST00000546588 COX7B2Q8TF08 81 aa5.57□□□□□ -1.52
VPS29-203ENST00000546588 KRTAP1-5Q9BYS1 174 aa5.57□□□□□ -1.52
VPS29-203ENST00000546588 ALMS1Q8TCU4 4167 aa5.57□□□□□ -1.52
VPS29-203ENST00000546588 GVQW2A0A096LPI5 108 aaPredicted RBP5.56□□□□□ -1.52
VPS29-203ENST00000546588 UBE2WQ96B02 151 aa5.56□□□□□ -1.52
VPS29-203ENST00000546588 IGKV3OR2-268A0A0C4DH90 116 aa5.55□□□□□ -1.52
VPS29-203ENST00000546588 LOC107984156A0A0G2JMH3 177 aa5.55□□□□□ -1.52
VPS29-203ENST00000546588 hADV29S1A0JD25 119 aa5.55□□□□□ -1.52
VPS29-203ENST00000546588 C3orf84H3BNL1 204 aa5.55□□□□□ -1.52
VPS29-203ENST00000546588 C5orf38Q86SI9 138 aa5.55□□□□□ -1.52
VPS29-203ENST00000546588 ARL17AQ8IVW1 177 aa5.55□□□□□ -1.52
VPS29-203ENST00000546588 C15orf56Q8N910 161 aa5.55□□□□□ -1.52
VPS29-203ENST00000546588 RMI2Q96E14 147 aa5.55□□□□□ -1.52
VPS29-203ENST00000546588 IGLV10-54A0A075B6I4 117 aa5.54□□□□□ -1.52
VPS29-203ENST00000546588 NBDYA0A0U1RRE5 68 aa5.54□□□□□ -1.52
VPS29-203ENST00000546588 ZNF73O43830 326 aaPredicted RBP5.54□□□□□ -1.52
VPS29-203ENST00000546588 COX17Q14061 63 aa5.54□□□□□ -1.52
VPS29-203ENST00000546588 CASC10Q5T4H9 136 aa5.54□□□□□ -1.52
VPS29-203ENST00000546588 Q6ZR54 194 aa5.54□□□□□ -1.52
VPS29-203ENST00000546588 Q6ZVQ6 151 aa5.54□□□□□ -1.52
VPS29-203ENST00000546588 KRTAP29-1A8MX34 341 aaPredicted RBP5.53□□□□□ -1.52
VPS29-203ENST00000546588 ACYP1P07311 99 aa5.53□□□□□ -1.52
VPS29-203ENST00000546588 Q6ZRN7 208 aaPredicted RBP5.53□□□□□ -1.52
VPS29-203ENST00000546588 LCA10Q71F78 164 aa5.53□□□□□ -1.52
VPS29-203ENST00000546588 KMT2AQ03164 3969 aa5.52□□□□□ -1.53
VPS29-203ENST00000546588 TRBV30A0A0K0K1B3 111 aa5.52□□□□□ -1.53
VPS29-203ENST00000546588 H0Y9J4 135 aa5.52□□□□□ -1.53
VPS29-203ENST00000546588 IGKV2-30P06310 120 aa5.52□□□□□ -1.53
VPS29-203ENST00000546588 UBE2DNLQ8IWF7 75 aa5.52□□□□□ -1.53
VPS29-203ENST00000546588 M0R378 163 aa5.51□□□□□ -1.53
VPS29-203ENST00000546588 MP68P56378 58 aa5.51□□□□□ -1.53
VPS29-203ENST00000546588 SPAG11BQ08648 103 aa5.51□□□□□ -1.53
VPS29-203ENST00000546588 CIRBPQ14011 172 aaKnown RBP5.51□□□□□ -1.53
VPS29-203ENST00000546588 ADAMTSL4-AS1Q5T5F5 129 aa5.51□□□□□ -1.53
VPS29-203ENST00000546588 SERP2Q8N6R1 65 aa5.51□□□□□ -1.53
VPS29-203ENST00000546588 TENM2Q9NT68 2774 aa5.51□□□□□ -1.53
VPS29-203ENST00000546588 DNAH10Q8IVF4 4471 aa5.51□□□□□ -1.53
VPS29-203ENST00000546588 FRAS1Q86XX4 4008 aa5.5□□□□□ -1.53
VPS29-203ENST00000546588 IGKV2D-24A0A075B6R9 120 aa5.5□□□□□ -1.53
VPS29-203ENST00000546588 TMEM256-PLSCR3K7ERE1 68 aa5.5□□□□□ -1.53
VPS29-203ENST00000546588 CDK2AP2O75956 126 aa5.5□□□□□ -1.53
VPS29-203ENST00000546588 TLX1NBP0CAT3 122 aa5.5□□□□□ -1.53
VPS29-203ENST00000546588 FXYD2P54710 66 aa5.5□□□□□ -1.53
VPS29-203ENST00000546588 LST1O00453 97 aa5.49□□□□□ -1.53
VPS29-203ENST00000546588 LINC01600Q96MT4 127 aa5.49□□□□□ -1.53
VPS29-203ENST00000546588 HIST1H4GQ99525 98 aa5.49□□□□□ -1.53
VPS29-203ENST00000546588 A0A0B4J2C4 111 aa5.48□□□□□ -1.53
VPS29-203ENST00000546588 LRCOL1A6NCL2 159 aa5.48□□□□□ -1.53
VPS29-203ENST00000546588 A8MUN3 132 aa5.48□□□□□ -1.53
VPS29-203ENST00000546588 CNBPP62633 177 aaKnown RBP5.48□□□□□ -1.53
VPS29-203ENST00000546588 UBE2BP63146 152 aa5.48□□□□□ -1.53
VPS29-203ENST00000546588 C2orf82Q6UX34 121 aa5.48□□□□□ -1.53
VPS29-203ENST00000546588 LINC00308Q8TCZ7 52 aa5.48□□□□□ -1.53
VPS29-203ENST00000546588 TOMM7Q9P0U1 55 aa5.48□□□□□ -1.53
VPS29-203ENST00000546588 HYDINQ4G0P3 5121 aa5.48□□□□□ -1.53
VPS29-203ENST00000546588 SOSTDC1Q6X4U4 206 aa5.47□□□□□ -1.53
VPS29-203ENST00000546588 FP248Q71RG6 208 aaPredicted RBP5.47□□□□□ -1.53
VPS29-203ENST00000546588 C6orf48Q9UBA6 75 aa5.47□□□□□ -1.53
VPS29-203ENST00000546588 DNAH2Q9P225 4427 aa5.47□□□□□ -1.53
VPS29-203ENST00000546588 TGP01266 2768 aa5.47□□□□□ -1.53
VPS29-203ENST00000546588 TRAV16A0A0A6YYK6 109 aaPredicted RBP5.46□□□□□ -1.54
VPS29-203ENST00000546588 HIST1H4AP62805 103 aaKnown RBP5.46□□□□□ -1.54
VPS29-203ENST00000546588 C14orf177Q52M58 125 aa5.46□□□□□ -1.54
VPS29-203ENST00000546588 UNQ6190/PRO20217Q6UXQ8 127 aa5.46□□□□□ -1.54
VPS29-203ENST00000546588 LINC00643Q86TS7 51 aa5.46□□□□□ -1.54
VPS29-203ENST00000546588 MUSTN1Q8IVN3 82 aa5.46□□□□□ -1.54
VPS29-203ENST00000546588 C6orf223Q8N319 242 aa5.46□□□□□ -1.54
VPS29-203ENST00000546588 MIR7-3HGQ8N6C7 128 aa5.46□□□□□ -1.54
VPS29-203ENST00000546588 K7ERJ3 54 aa5.45□□□□□ -1.54
VPS29-203ENST00000546588 CFC1BP0CG36 223 aa5.45□□□□□ -1.54
VPS29-203ENST00000546588 CFC1P0CG37 223 aa5.45□□□□□ -1.54
VPS29-203ENST00000546588 SYCNQ0VAF6 134 aa5.45□□□□□ -1.54
VPS29-203ENST00000546588 PHF5AQ7RTV0 110 aaKnown RBP5.45□□□□□ -1.54
VPS29-203ENST00000546588 CAMK2N2Q96S95 79 aa5.45□□□□□ -1.54
VPS29-203ENST00000546588 NHP2Q9NX24 153 aaKnown RBP5.45□□□□□ -1.54
VPS29-203ENST00000546588 DNAH17Q9UFH2 4485 aa5.44□□□□□ -1.54
VPS29-203ENST00000546588 CXCL6P80162 114 aa5.44□□□□□ -1.54
VPS29-203ENST00000546588 NKAPP1Q8N9T2 125 aa5.44□□□□□ -1.54
VPS29-203ENST00000546588 PSPHP1O15172 72 aa5.43□□□□□ -1.54
VPS29-203ENST00000546588 HIGD2BQ4VC39 106 aa5.43□□□□□ -1.54
VPS29-203ENST00000546588 DAND5Q8N907 189 aa5.43□□□□□ -1.54
VPS29-203ENST00000546588 TRBV10-2A0A0K0K1G8 114 aa5.42□□□□□ -1.54
VPS29-203ENST00000546588 LINC00158P58513 81 aa5.42□□□□□ -1.54
VPS29-203ENST00000546588 C6orf99Q4VX62 202 aa5.42□□□□□ -1.54
VPS29-203ENST00000546588 LCE1AQ5T7P2 110 aa5.42□□□□□ -1.54
VPS29-203ENST00000546588 KRTAP5-6Q6L8G9 129 aaPredicted RBP5.42□□□□□ -1.54
VPS29-203ENST00000546588 C7orf65Q6ZTY9 151 aa5.42□□□□□ -1.54
VPS29-203ENST00000546588 SND1-IT1Q9HBX3 110 aa5.42□□□□□ -1.54
VPS29-203ENST00000546588 SACSQ9NZJ4 4579 aa5.41□□□□□ -1.54
VPS29-203ENST00000546588 IGKV2-28A0A075B6P5 120 aa5.41□□□□□ -1.54
VPS29-203ENST00000546588 NDUFC1O43677 76 aa5.41□□□□□ -1.54
VPS29-203ENST00000546588 IGKV2D-28P01615 120 aa5.41□□□□□ -1.54
VPS29-203ENST00000546588 INAFM2P0DMQ5 153 aa5.41□□□□□ -1.54
VPS29-203ENST00000546588 PRR3P79522 188 aaKnown RBP5.41□□□□□ -1.54
VPS29-203ENST00000546588 C9orf116Q5BN46 136 aaPredicted RBP5.41□□□□□ -1.54
VPS29-203ENST00000546588 Q8N814 137 aa5.41□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 63.2 ms