RNA–Protein interactions for RNA: ENST00000543766.2

VPS13D-212, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2 BASIC

Gene VPS13D, Length 3,838 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-212ENST00000543766 IGHV4-30-4P0DP06 118 aa5.87□□□□□ -1.47
VPS13D-212ENST00000543766 F8P00451 2351 aa5.87□□□□□ -1.47
VPS13D-212ENST00000543766 IGLV2-33A0A075B6J2 118 aaPredicted RBP5.87□□□□□ -1.47
VPS13D-212ENST00000543766 IGLV4-60A0A075B6I1 120 aa5.86□□□□□ -1.47
VPS13D-212ENST00000543766 ETDCA0A1B0GVM5 59 aa5.86□□□□□ -1.47
VPS13D-212ENST00000543766 H0Y9P7 68 aa5.86□□□□□ -1.47
VPS13D-212ENST00000543766 DSCR9P59020 149 aa5.86□□□□□ -1.47
VPS13D-212ENST00000543766 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP5.86□□□□□ -1.47
VPS13D-212ENST00000543766 C20orf166-AS1Q96NR2 134 aa5.86□□□□□ -1.47
VPS13D-212ENST00000543766 ANKHD1Q8IWZ3 2542 aaKnown RBP5.86□□□□□ -1.47
VPS13D-212ENST00000543766 P0C880 135 aa5.86□□□□□ -1.47
VPS13D-212ENST00000543766 DEFB116Q30KQ4 102 aa5.85□□□□□ -1.47
VPS13D-212ENST00000543766 TRBV6-4A0A1B0GX49 114 aa5.85□□□□□ -1.47
VPS13D-212ENST00000543766 WNK1Q9H4A3 2382 aa5.85□□□□□ -1.47
VPS13D-212ENST00000543766 IGHV3-66A0A0C4DH42 116 aa5.84□□□□□ -1.47
VPS13D-212ENST00000543766 ODF3BA8MYP8 253 aa5.84□□□□□ -1.47
VPS13D-212ENST00000543766 LY6G6DO95868 133 aa5.84□□□□□ -1.47
VPS13D-212ENST00000543766 ST20-AS1Q8NBB2 130 aa5.84□□□□□ -1.47
VPS13D-212ENST00000543766 CIRBP-AS1Q8TBR5 109 aa5.84□□□□□ -1.47
VPS13D-212ENST00000543766 XAGE1AQ9HD64 81 aa5.84□□□□□ -1.47
VPS13D-212ENST00000543766 NIPBLQ6KC79 2804 aaeCLIP5.84□□□□□ -1.47
VPS13D-212ENST00000543766 IGHV7-81A0A0B4J1V7 117 aa5.84□□□□□ -1.48
VPS13D-212ENST00000543766 CHCHD7Q9BUK0 85 aa5.83□□□□□ -1.48
VPS13D-212ENST00000543766 CDKN2A-AS1Q9UH64 79 aa5.83□□□□□ -1.48
VPS13D-212ENST00000543766 A6NDX4 124 aa5.83□□□□□ -1.48
VPS13D-212ENST00000543766 Q8N9W7 124 aa5.83□□□□□ -1.48
VPS13D-212ENST00000543766 C10orf25Q5T742 122 aa5.83□□□□□ -1.48
VPS13D-212ENST00000543766 IGKV2-28A0A075B6P5 120 aa5.82□□□□□ -1.48
VPS13D-212ENST00000543766 IGKV2D-28P01615 120 aa5.82□□□□□ -1.48
VPS13D-212ENST00000543766 IGKV3-20P01619 116 aa5.82□□□□□ -1.48
VPS13D-212ENST00000543766 IGHV3-11P01762 117 aa5.82□□□□□ -1.48
VPS13D-212ENST00000543766 ELOF1P60002 83 aaKnown RBP5.82□□□□□ -1.48
VPS13D-212ENST00000543766 APCP25054 2843 aa5.82□□□□□ -1.48
VPS13D-212ENST00000543766 DEFB1P60022 68 aa5.81□□□□□ -1.48
VPS13D-212ENST00000543766 HRNRQ86YZ3 2850 aaPredicted RBP5.81□□□□□ -1.48
VPS13D-212ENST00000543766 PDE6GP18545 87 aa5.8□□□□□ -1.48
VPS13D-212ENST00000543766 IGKV3OR2-268A0A0C4DH90 116 aa5.8□□□□□ -1.48
VPS13D-212ENST00000543766 IGHV4-38-2P0DP08 117 aa5.8□□□□□ -1.48
VPS13D-212ENST00000543766 COX6A2Q02221 97 aa5.8□□□□□ -1.48
VPS13D-212ENST00000543766 ASB16-AS1Q495Z4 193 aa5.8□□□□□ -1.48
VPS13D-212ENST00000543766 CRIPTQ9P021 101 aa5.8□□□□□ -1.48
VPS13D-212ENST00000543766 MSMBP08118 114 aa5.79□□□□□ -1.48
VPS13D-212ENST00000543766 LINC01558Q9Y6Z2 57 aa5.79□□□□□ -1.48
VPS13D-212ENST00000543766 NOTCH3Q9UM47 2321 aa5.79□□□□□ -1.48
VPS13D-212ENST00000543766 SMIM1B2RUZ4 78 aa5.79□□□□□ -1.48
VPS13D-212ENST00000543766 IGKV4-1P06312 121 aa5.79□□□□□ -1.48
VPS13D-212ENST00000543766 NOTCH2NLQ7Z3S9 236 aa5.78□□□□□ -1.48
VPS13D-212ENST00000543766 Q8NDZ9 215 aa5.78□□□□□ -1.48
VPS13D-212ENST00000543766 FBN2P35556 2912 aa5.78□□□□□ -1.48
VPS13D-212ENST00000543766 RTL8CO15255 209 aa5.78□□□□□ -1.48
VPS13D-212ENST00000543766 WFDC13Q8IUB5 93 aa5.77□□□□□ -1.49
VPS13D-212ENST00000543766 MUC7Q8TAX7 377 aa5.77□□□□□ -1.49
VPS13D-212ENST00000543766 ZFP36P26651 326 aaKnown RBP5.77□□□□□ -1.49
VPS13D-212ENST00000543766 PCOTHQ58A44 107 aa5.77□□□□□ -1.49
VPS13D-212ENST00000543766 KLK12Q9UKR0 248 aa5.77□□□□□ -1.49
VPS13D-212ENST00000543766 ZANQ9Y493 2812 aa5.77□□□□□ -1.49
VPS13D-212ENST00000543766 FLNAP21333 2647 aaKnown RBP5.76□□□□□ -1.49
VPS13D-212ENST00000543766 LINC00483Q53H64 154 aa5.76□□□□□ -1.49
VPS13D-212ENST00000543766 MINOS1Q5TGZ0 78 aa5.76□□□□□ -1.49
VPS13D-212ENST00000543766 SSBP3-AS1Q7Z2R9 100 aa5.76□□□□□ -1.49
VPS13D-212ENST00000543766 Q6ZQY7 126 aa5.76□□□□□ -1.49
VPS13D-212ENST00000543766 A0A1B0GW54 56 aa5.76□□□□□ -1.49
VPS13D-212ENST00000543766 WFDC10BQ8IUB3 73 aa5.76□□□□□ -1.49
VPS13D-212ENST00000543766 Q9BRP9 147 aa5.76□□□□□ -1.49
VPS13D-212ENST00000543766 EGFEM1PQ0D2K5 195 aa5.75□□□□□ -1.49
VPS13D-212ENST00000543766 CASC10Q5T4H9 136 aa5.75□□□□□ -1.49
VPS13D-212ENST00000543766 LINC00467Q9BRT7 94 aa5.75□□□□□ -1.49
VPS13D-212ENST00000543766 HIVEP1P15822 2718 aa5.75□□□□□ -1.49
VPS13D-212ENST00000543766 A0A1B0GU69 56 aa5.75□□□□□ -1.49
VPS13D-212ENST00000543766 LINC00575Q6W349 94 aa5.74□□□□□ -1.49
VPS13D-212ENST00000543766 ATRQ13535 2644 aa5.74□□□□□ -1.49
VPS13D-212ENST00000543766 OTOGQ6ZRI0 2925 aa5.73□□□□□ -1.49
VPS13D-212ENST00000543766 INSP01308 110 aa5.73□□□□□ -1.49
VPS13D-212ENST00000543766 FN1P02751 2386 aaKnown RBP5.73□□□□□ -1.49
VPS13D-212ENST00000543766 LOC110117498A0A087WWA1 95 aa5.72□□□□□ -1.49
VPS13D-212ENST00000543766 LYNX1G3V0Z9 82 aa5.72□□□□□ -1.49
VPS13D-212ENST00000543766 TLX1NBP0CAT3 122 aa5.72□□□□□ -1.49
VPS13D-212ENST00000543766 LYNX1P0DP58 116 aa5.72□□□□□ -1.49
VPS13D-212ENST00000543766 KRTAP10-9P60411 292 aa5.72□□□□□ -1.49
VPS13D-212ENST00000543766 KRTAP25-1Q3LHN0 102 aa5.72□□□□□ -1.49
VPS13D-212ENST00000543766 A0A096LNT2 108 aa5.72□□□□□ -1.49
VPS13D-212ENST00000543766 CCL18P55774 89 aa5.71□□□□□ -1.49
VPS13D-212ENST00000543766 PROK1P58294 105 aa5.71□□□□□ -1.49
VPS13D-212ENST00000543766 IGLV5-52A0A0A0MRZ9 124 aa5.71□□□□□ -1.5
VPS13D-212ENST00000543766 Q6ZSN1 163 aa5.71□□□□□ -1.5
VPS13D-212ENST00000543766 HTN1P15515 57 aa5.71□□□□□ -1.5
VPS13D-212ENST00000543766 PDZD2O15018 2839 aa5.71□□□□□ -1.5
VPS13D-212ENST00000543766 A8MTW9 85 aa5.7□□□□□ -1.5
VPS13D-212ENST00000543766 G3V318 75 aa5.7□□□□□ -1.5
VPS13D-212ENST00000543766 LINC00612Q8N6U2 182 aa5.7□□□□□ -1.5
VPS13D-212ENST00000543766 IGKV3-7A0A075B6H7 116 aa5.7□□□□□ -1.5
VPS13D-212ENST00000543766 CSNK1G2-AS1Q8NCQ2 148 aa5.69□□□□□ -1.5
VPS13D-212ENST00000543766 HIVEP2P31629 2446 aa5.69□□□□□ -1.5
VPS13D-212ENST00000543766 H3BPC8 53 aa5.68□□□□□ -1.5
VPS13D-212ENST00000543766 ZCCHC13Q8WW36 166 aaKnown RBP5.68□□□□□ -1.5
VPS13D-212ENST00000543766 STAB1Q9NY15 2570 aa5.68□□□□□ -1.5
VPS13D-212ENST00000543766 NBEAL1Q6ZS30 2694 aa5.68□□□□□ -1.5
VPS13D-212ENST00000543766 A0A1W2PPR1 153 aa5.68□□□□□ -1.5
VPS13D-212ENST00000543766 A8MUU9 505 aa5.68□□□□□ -1.5
VPS13D-212ENST00000543766 IGLV8-61A0A075B6I0 122 aa5.67□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 9.1 ms