RNA–Protein interactions for RNA: ENST00000540738.3

COLCA1-204, Transcript of colorectal cancer associated 1, humanhuman

TSL 1 (best)

Gene COLCA1, Length 5,537 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COLCA1-204ENST00000540738 C8orf87E5RJ46 101 aa9.32□□□□□ -0.92
COLCA1-204ENST00000540738 CDIP1Q9H305 208 aa9.32□□□□□ -0.92
COLCA1-204ENST00000540738 UNC79Q9P2D8 2635 aa9.32□□□□□ -0.92
COLCA1-204ENST00000540738 RANBP2P49792 3224 aaKnown RBP9.32□□□□□ -0.92
COLCA1-204ENST00000540738 IGLV7-43P04211 117 aa9.32□□□□□ -0.92
COLCA1-204ENST00000540738 A0A087WVE0 104 aa9.3□□□□□ -0.92
COLCA1-204ENST00000540738 TRBV7-4A0A0J9YYF1 115 aa9.3□□□□□ -0.92
COLCA1-204ENST00000540738 BPTFQ12830 3046 aa9.3□□□□□ -0.92
COLCA1-204ENST00000540738 SPINK1P00995 79 aa9.3□□□□□ -0.92
COLCA1-204ENST00000540738 TNP2Q05952 138 aa9.29□□□□□ -0.92
COLCA1-204ENST00000540738 LOC110117498A0A087WWA1 95 aa9.29□□□□□ -0.92
COLCA1-204ENST00000540738 MPLKIPQ8TAP9 179 aa9.29□□□□□ -0.92
COLCA1-204ENST00000540738 Q96NJ1 140 aa9.29□□□□□ -0.92
COLCA1-204ENST00000540738 STAB1Q9NY15 2570 aa9.29□□□□□ -0.92
COLCA1-204ENST00000540738 C9orf129Q5T035 196 aaKnown RBP9.28□□□□□ -0.92
COLCA1-204ENST00000540738 FAM218AQ96MZ4 157 aa9.28□□□□□ -0.92
COLCA1-204ENST00000540738 BRK1Q8WUW1 75 aa9.27□□□□□ -0.92
COLCA1-204ENST00000540738 C1orf64Q8NEQ6 169 aa9.27□□□□□ -0.93
COLCA1-204ENST00000540738 LITAFQ99732 161 aa9.26□□□□□ -0.93
COLCA1-204ENST00000540738 COX6B2Q6YFQ2 88 aa9.26□□□□□ -0.93
COLCA1-204ENST00000540738 PSORS1C2Q9UIG4 136 aa9.26□□□□□ -0.93
COLCA1-204ENST00000540738 IGSF10Q6WRI0 2623 aa9.26□□□□□ -0.93
COLCA1-204ENST00000540738 COL6A5A8TX70 2615 aa9.25□□□□□ -0.93
COLCA1-204ENST00000540738 Q6ZQT0 140 aa9.25□□□□□ -0.93
COLCA1-204ENST00000540738 TRBV7-7A0A0K0K1E9 115 aa9.25□□□□□ -0.93
COLCA1-204ENST00000540738 C7orf65Q6ZTY9 151 aa9.24□□□□□ -0.93
COLCA1-204ENST00000540738 A0A1W2PNN7 141 aa9.21□□□□□ -0.93
COLCA1-204ENST00000540738 SMIM29Q86T20 159 aa9.21□□□□□ -0.94
COLCA1-204ENST00000540738 TMEM254Q8TBM7 123 aa9.21□□□□□ -0.94
COLCA1-204ENST00000540738 C5orf42Q9H799 3197 aa9.21□□□□□ -0.94
COLCA1-204ENST00000540738 A6NED7 52 aa9.2□□□□□ -0.94
COLCA1-204ENST00000540738 TEX15Q9BXT5 2789 aa9.18□□□□□ -0.94
COLCA1-204ENST00000540738 A8MWP4 228 aa9.18□□□□□ -0.94
COLCA1-204ENST00000540738 H3BPC8 53 aa9.18□□□□□ -0.94
COLCA1-204ENST00000540738 LCE6AA0A183 80 aa9.18□□□□□ -0.94
COLCA1-204ENST00000540738 SPRR4Q96PI1 79 aa9.17□□□□□ -0.94
COLCA1-204ENST00000540738 C1orf195Q5TG92 126 aa9.16□□□□□ -0.94
COLCA1-204ENST00000540738 IGLV5-37A0A075B6J1 123 aa9.16□□□□□ -0.94
COLCA1-204ENST00000540738 IGFL1Q6UW32 110 aa9.15□□□□□ -0.94
COLCA1-204ENST00000540738 TRAV22A0A0B4J277 110 aa9.14□□□□□ -0.95
COLCA1-204ENST00000540738 ACYP2P14621 99 aa9.14□□□□□ -0.95
COLCA1-204ENST00000540738 MRPL34Q9BQ48 92 aaKnown RBP9.14□□□□□ -0.95
COLCA1-204ENST00000540738 A0A0U1RQV1 116 aa9.14□□□□□ -0.95
COLCA1-204ENST00000540738 MGAQ8IWI9 3026 aa9.13□□□□□ -0.95
COLCA1-204ENST00000540738 CHD6Q8TD26 2715 aa9.13□□□□□ -0.95
COLCA1-204ENST00000540738 KRTAP21-3Q3LHN1 58 aa9.12□□□□□ -0.95
COLCA1-204ENST00000540738 LOC101927531A0A1B0GV80 90 aa9.12□□□□□ -0.95
COLCA1-204ENST00000540738 AKAP13Q12802 2813 aa9.11□□□□□ -0.95
COLCA1-204ENST00000540738 DSPP15924 2871 aaKnown RBP9.11□□□□□ -0.95
COLCA1-204ENST00000540738 SMIM26A0A096LP01 95 aa9.1□□□□□ -0.95
COLCA1-204ENST00000540738 CCDC179H3BU77 68 aa9.1□□□□□ -0.95
COLCA1-204ENST00000540738 Q8N377 158 aa9.09□□□□□ -0.95
COLCA1-204ENST00000540738 GCN1Q92616 2671 aaKnown RBP9.09□□□□□ -0.95
COLCA1-204ENST00000540738 ANAPC11Q9NYG5 84 aa9.08□□□□□ -0.96
COLCA1-204ENST00000540738 PCNTO95613 3336 aa9.08□□□□□ -0.96
COLCA1-204ENST00000540738 OBSCN-AS1Q96MR7 158 aa9.08□□□□□ -0.96
COLCA1-204ENST00000540738 C9orf92A6NGG3 77 aa9.07□□□□□ -0.96
COLCA1-204ENST00000540738 DSCR10P59022 87 aa9.06□□□□□ -0.96
COLCA1-204ENST00000540738 A0A1B0GVX0 72 aa9.06□□□□□ -0.96
COLCA1-204ENST00000540738 SMCPP49901 116 aaPredicted RBP9.05□□□□□ -0.96
COLCA1-204ENST00000540738 C8orf17Q9NRJ1 99 aa9.05□□□□□ -0.96
COLCA1-204ENST00000540738 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.05□□□□□ -0.96
COLCA1-204ENST00000540738 RBM12B-AS1Q9P1G2 102 aa9.04□□□□□ -0.96
COLCA1-204ENST00000540738 PLAC8Q9NZF1 115 aa9.04□□□□□ -0.96
COLCA1-204ENST00000540738 LAMA3Q16787 3333 aa9.03□□□□□ -0.96
COLCA1-204ENST00000540738 FAM229BQ4G0N7 80 aa9.03□□□□□ -0.96
COLCA1-204ENST00000540738 PRO0461Q9UI25 63 aa9.03□□□□□ -0.96
COLCA1-204ENST00000540738 PRR15Q8IV56 129 aa9.02□□□□□ -0.96
COLCA1-204ENST00000540738 EIF4EBP3O60516 100 aaPredicted RBP9.02□□□□□ -0.97
COLCA1-204ENST00000540738 CD164Q04900 197 aa9.02□□□□□ -0.97
COLCA1-204ENST00000540738 K7EQZ3 153 aa9.01□□□□□ -0.97
COLCA1-204ENST00000540738 ERC2-IT1O76042 136 aa9□□□□□ -0.97
COLCA1-204ENST00000540738 IGLV7-46A0A075B6I9 117 aa8.98□□□□□ -0.97
COLCA1-204ENST00000540738 A0A1B0GU69 56 aa8.98□□□□□ -0.97
COLCA1-204ENST00000540738 NOTCH1P46531 2555 aa8.97□□□□□ -0.97
COLCA1-204ENST00000540738 PRR26Q8N8Z3 221 aa8.97□□□□□ -0.97
COLCA1-204ENST00000540738 MKI67P46013 3256 aaKnown RBP8.95□□□□□ -0.98
COLCA1-204ENST00000540738 Q6ZSA8 131 aa8.92□□□□□ -0.98
COLCA1-204ENST00000540738 Q5VSD8 79 aa8.91□□□□□ -0.98
COLCA1-204ENST00000540738 A0A0G2JQZ4 141 aa8.9□□□□□ -0.98
COLCA1-204ENST00000540738 IGLV5-48A0A075B6I7 105 aa8.88□□□□□ -0.99
COLCA1-204ENST00000540738 KRTAP1-5Q9BYS1 174 aa8.88□□□□□ -0.99
COLCA1-204ENST00000540738 A0A0C4DFX4 3053 aa8.87□□□□□ -0.99
COLCA1-204ENST00000540738 A0A1W2PNM2 257 aa8.86□□□□□ -0.99
COLCA1-204ENST00000540738 WDFY4Q6ZS81 3184 aa8.86□□□□□ -0.99
COLCA1-204ENST00000540738 PSPHP1O15172 72 aa8.85□□□□□ -0.99
COLCA1-204ENST00000540738 PRUNE2Q8WUY3 3088 aa8.85□□□□□ -0.99
COLCA1-204ENST00000540738 ITPR2Q14571 2701 aa8.84□□□□□ -0.99
COLCA1-204ENST00000540738 UBR5O95071 2799 aaPredicted RBP8.83□□□□□ -1
COLCA1-204ENST00000540738 NBEAL1Q6ZS30 2694 aa8.83□□□□□ -1
COLCA1-204ENST00000540738 Q6ZR54 194 aa8.83□□□□□ -1
COLCA1-204ENST00000540738 KRTAP10-1P60331 282 aa8.82□□□□□ -1
COLCA1-204ENST00000540738 FAM104AQ969W3 186 aa8.8□□□□□ -1
COLCA1-204ENST00000540738 PMAIP1Q13794 54 aa8.8□□□□□ -1
COLCA1-204ENST00000540738 KRTAP10-2P60368 255 aa8.79□□□□□ -1
COLCA1-204ENST00000540738 SPRR1AP35321 89 aa8.78□□□□□ -1
COLCA1-204ENST00000540738 FLNCQ14315 2725 aa8.78□□□□□ -1
COLCA1-204ENST00000540738 BRCA2P51587 3418 aa8.78□□□□□ -1
COLCA1-204ENST00000540738 NSD1Q96L73 2696 aaPredicted RBP8.77□□□□□ -1.01
COLCA1-204ENST00000540738 SEC61BP60468 96 aaKnown RBP8.75□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms