RNA–Protein interactions for RNA: ENST00000536710.1

PRKDC-208, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 4

Gene PRKDC, Length 554 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-208ENST00000536710 LINC01545Q5VT33 79 aa0.82□□□□□ -2.28
PRKDC-208ENST00000536710 PSMG3Q9BT73 122 aaPredicted RBP0.82□□□□□ -2.28
PRKDC-208ENST00000536710 VPS13BQ7Z7G8 4022 aa0.81□□□□□ -2.28
PRKDC-208ENST00000536710 DNAH11Q96DT5 4516 aa0.81□□□□□ -2.28
PRKDC-208ENST00000536710 HERC1Q15751 4861 aa0.81□□□□□ -2.28
PRKDC-208ENST00000536710 TMEM14DPA8MWL7 114 aa0.81□□□□□ -2.28
PRKDC-208ENST00000536710 G3V318 75 aa0.81□□□□□ -2.28
PRKDC-208ENST00000536710 H3BSH0 61 aa0.81□□□□□ -2.28
PRKDC-208ENST00000536710 H3BUA1 57 aa0.81□□□□□ -2.28
PRKDC-208ENST00000536710 PRH1P02810 166 aa0.81□□□□□ -2.28
PRKDC-208ENST00000536710 SAA2P0DJI9 122 aaPredicted RBP0.81□□□□□ -2.28
PRKDC-208ENST00000536710 ELOF1P60002 83 aaKnown RBP0.81□□□□□ -2.28
PRKDC-208ENST00000536710 CCDC58Q4VC31 144 aa0.81□□□□□ -2.28
PRKDC-208ENST00000536710 ACBD7Q8N6N7 88 aa0.81□□□□□ -2.28
PRKDC-208ENST00000536710 VSTM2AQ8TAG5 236 aa0.81□□□□□ -2.28
PRKDC-208ENST00000536710 LEAP2Q969E1 77 aa0.81□□□□□ -2.28
PRKDC-208ENST00000536710 NDUFA12Q9UI09 145 aa0.81□□□□□ -2.28
PRKDC-208ENST00000536710 GNG8Q9UK08 70 aa0.81□□□□□ -2.28
PRKDC-208ENST00000536710 DYNC1H1Q14204 4646 aaKnown RBP0.8□□□□□ -2.28
PRKDC-208ENST00000536710 LOC100130705A0A1B0GUX0 176 aa0.8□□□□□ -2.28
PRKDC-208ENST00000536710 GNGT2O14610 69 aa0.8□□□□□ -2.28
PRKDC-208ENST00000536710 NCR2O95944 276 aa0.8□□□□□ -2.28
PRKDC-208ENST00000536710 GNGT1P63211 74 aa0.8□□□□□ -2.28
PRKDC-208ENST00000536710 DEFA5Q01523 94 aa0.8□□□□□ -2.28
PRKDC-208ENST00000536710 INSL4Q14641 139 aa0.8□□□□□ -2.28
PRKDC-208ENST00000536710 RPL39P5Q59GN2 51 aa0.8□□□□□ -2.28
PRKDC-208ENST00000536710 DEFB121Q5J5C9 76 aa0.8□□□□□ -2.28
PRKDC-208ENST00000536710 C6orf201Q7Z4U5 140 aa0.8□□□□□ -2.28
PRKDC-208ENST00000536710 ZNF436-AS1Q8NC38 126 aaPredicted RBP0.8□□□□□ -2.28
PRKDC-208ENST00000536710 ARL11Q969Q4 196 aa0.8□□□□□ -2.28
PRKDC-208ENST00000536710 FAM107BQ9H098 131 aa0.8□□□□□ -2.28
PRKDC-208ENST00000536710 AP4S1Q9Y587 144 aa0.8□□□□□ -2.28
PRKDC-208ENST00000536710 APOBP04114 4563 aaKnown RBP0.8□□□□□ -2.28
PRKDC-208ENST00000536710 MYCBP2O75592 4640 aa0.8□□□□□ -2.28
PRKDC-208ENST00000536710 DNAH5Q8TE73 4624 aa0.79□□□□□ -2.28
PRKDC-208ENST00000536710 SRRM2Q9UQ35 2752 aaKnown RBP0.79□□□□□ -2.28
PRKDC-208ENST00000536710 IGLC7A0M8Q6 106 aa0.79□□□□□ -2.28
PRKDC-208ENST00000536710 RBAKDNA6NC62 111 aa0.79□□□□□ -2.28
PRKDC-208ENST00000536710 EFCAB10A6NFE3 127 aa0.79□□□□□ -2.28
PRKDC-208ENST00000536710 FAM223BA6NKX1 122 aa0.79□□□□□ -2.28
PRKDC-208ENST00000536710 MCRIP1C9JLW8 97 aa0.79□□□□□ -2.28
PRKDC-208ENST00000536710 F2Z2F3 143 aa0.79□□□□□ -2.28
PRKDC-208ENST00000536710 HIST1H1DP16402 221 aaKnown RBP0.79□□□□□ -2.28
PRKDC-208ENST00000536710 CBLN1P23435 193 aa0.79□□□□□ -2.28
PRKDC-208ENST00000536710 DEFB114Q30KQ6 69 aa0.79□□□□□ -2.28
PRKDC-208ENST00000536710 FAM223AQ8IWN6 122 aa0.79□□□□□ -2.28
PRKDC-208ENST00000536710 TTC9CQ8N5M4 171 aa0.79□□□□□ -2.28
PRKDC-208ENST00000536710 TMEM167AQ8TBQ9 72 aa0.79□□□□□ -2.28
PRKDC-208ENST00000536710 USMG5Q96IX5 58 aa0.79□□□□□ -2.28
PRKDC-208ENST00000536710 APLNQ9ULZ1 77 aa0.79□□□□□ -2.28
PRKDC-208ENST00000536710 LRP1BQ9NZR2 4599 aa0.79□□□□□ -2.28
PRKDC-208ENST00000536710 PKHD1L1Q86WI1 4243 aa0.78□□□□□ -2.28
PRKDC-208ENST00000536710 FAT3Q8TDW7 4589 aa0.78□□□□□ -2.28
PRKDC-208ENST00000536710 TRBV7-1A0A0A6YYK4 115 aa0.78□□□□□ -2.28
PRKDC-208ENST00000536710 TRAV1-2A0A0B4J238 106 aa0.78□□□□□ -2.28
PRKDC-208ENST00000536710 TRAV12-3A0A0B4J271 114 aa0.78□□□□□ -2.28
PRKDC-208ENST00000536710 A8MTW9 85 aa0.78□□□□□ -2.28
PRKDC-208ENST00000536710 K7EIM0 57 aa0.78□□□□□ -2.28
PRKDC-208ENST00000536710 TPPP2P59282 170 aa0.78□□□□□ -2.28
PRKDC-208ENST00000536710 NPC2P61916 151 aa0.78□□□□□ -2.28
PRKDC-208ENST00000536710 RPS25P62851 125 aaKnown RBP0.78□□□□□ -2.28
PRKDC-208ENST00000536710 PPP3R1P63098 170 aa0.78□□□□□ -2.28
PRKDC-208ENST00000536710 WT1-ASQ06250 92 aa0.78□□□□□ -2.28
PRKDC-208ENST00000536710 SPCS2Q15005 226 aa0.78□□□□□ -2.28
PRKDC-208ENST00000536710 SPANXN1Q5VSR9 72 aa0.78□□□□□ -2.28
PRKDC-208ENST00000536710 C8orf59Q8N0T1 100 aaPredicted RBP0.78□□□□□ -2.28
PRKDC-208ENST00000536710 ARHGAP5-AS1Q96IT6 56 aa0.78□□□□□ -2.28
PRKDC-208ENST00000536710 UBR4Q5T4S7 5183 aa0.78□□□□□ -2.28
PRKDC-208ENST00000536710 HMCN2Q8NDA2 5059 aa0.77□□□□□ -2.29
PRKDC-208ENST00000536710 I3L2K1 104 aa0.77□□□□□ -2.29
PRKDC-208ENST00000536710 NDUFA4O00483 81 aa0.77□□□□□ -2.29
PRKDC-208ENST00000536710 APELAP0DMC3 54 aa0.77□□□□□ -2.29
PRKDC-208ENST00000536710 PLGLAQ15195 96 aa0.77□□□□□ -2.29
PRKDC-208ENST00000536710 DEFB135Q30KP9 77 aa0.77□□□□□ -2.29
PRKDC-208ENST00000536710 RPL7L1Q6DKI1 246 aaKnown RBP0.77□□□□□ -2.29
PRKDC-208ENST00000536710 ZNF818PQ6ZRF7 136 aa0.77□□□□□ -2.29
PRKDC-208ENST00000536710 TMEM203Q969S6 136 aa0.77□□□□□ -2.29
PRKDC-208ENST00000536710 PFDN5Q99471 154 aa0.77□□□□□ -2.29
PRKDC-208ENST00000536710 S100A13Q99584 98 aa0.77□□□□□ -2.29
PRKDC-208ENST00000536710 NDUFA4L2Q9NRX3 87 aa0.77□□□□□ -2.29
PRKDC-208ENST00000536710 ABRACLQ9P1F3 81 aa0.77□□□□□ -2.29
PRKDC-208ENST00000536710 RNF213Q63HN8 5207 aa0.76□□□□□ -2.29
PRKDC-208ENST00000536710 IGLC1P0CG04 106 aa0.76□□□□□ -2.29
PRKDC-208ENST00000536710 RRAS2P62070 204 aaPredicted RBP0.76□□□□□ -2.29
PRKDC-208ENST00000536710 PRCDQ00LT1 54 aa0.76□□□□□ -2.29
PRKDC-208ENST00000536710 Q6ZUT4 128 aa0.76□□□□□ -2.29
PRKDC-208ENST00000536710 C20orf197Q8N268 126 aa0.76□□□□□ -2.29
PRKDC-208ENST00000536710 LSM10Q969L4 123 aaKnown RBP0.76□□□□□ -2.29
PRKDC-208ENST00000536710 RHPN1-AS1Q9BWJ2 59 aa0.76□□□□□ -2.29
PRKDC-208ENST00000536710 FXYD6Q9H0Q3 95 aa0.76□□□□□ -2.29
PRKDC-208ENST00000536710 FAT1Q14517 4588 aa0.75□□□□□ -2.29
PRKDC-208ENST00000536710 LRP1Q07954 4544 aaKnown RBP0.75□□□□□ -2.29
PRKDC-208ENST00000536710 DNAH8Q96JB1 4490 aa0.75□□□□□ -2.29
PRKDC-208ENST00000536710 PDCD5O14737 125 aa0.75□□□□□ -2.29
PRKDC-208ENST00000536710 DEFB4AO15263 64 aa0.75□□□□□ -2.29
PRKDC-208ENST00000536710 PITX3O75364 302 aa0.75□□□□□ -2.29
PRKDC-208ENST00000536710 TRAPPC2P0DI81 140 aa0.75□□□□□ -2.29
PRKDC-208ENST00000536710 TRAPPC2BP0DI82 140 aa0.75□□□□□ -2.29
PRKDC-208ENST00000536710 DEFB131AP59861 70 aa0.75□□□□□ -2.29
PRKDC-208ENST00000536710 SSBP1Q04837 148 aaKnown RBP0.75□□□□□ -2.29
Retrieved 100 of 20,778 RNA–protein pairs in 64.9 ms