RNA–Protein interactions for RNA: ENST00000511424.5

LIMCH1-212, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 3

Gene LIMCH1, Length 551 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-212ENST00000511424 CAMK2N2Q96S95 79 aa1.52□□□□□ -2.17
LIMCH1-212ENST00000511424 C11orf68Q9H3H3 251 aaKnown RBP1.52□□□□□ -2.17
LIMCH1-212ENST00000511424 MAP1LC3AQ9H492 121 aa1.52□□□□□ -2.17
LIMCH1-212ENST00000511424 MRPL35Q9NZE8 188 aaKnown RBP1.52□□□□□ -2.17
LIMCH1-212ENST00000511424 PRO0628Q9UI54 55 aa1.52□□□□□ -2.17
LIMCH1-212ENST00000511424 PRO0255Q9UI72 69 aa1.52□□□□□ -2.17
LIMCH1-212ENST00000511424 UBE2D4Q9Y2X8 147 aa1.52□□□□□ -2.17
LIMCH1-212ENST00000511424 SPCS1Q9Y6A9 102 aa1.52□□□□□ -2.17
LIMCH1-212ENST00000511424 HSPG2P98160 4391 aa1.52□□□□□ -2.17
LIMCH1-212ENST00000511424 TRBV6-8A0A0A6YYG3 113 aa1.51□□□□□ -2.17
LIMCH1-212ENST00000511424 IGHV6-1A0A0B4J1U7 121 aa1.51□□□□□ -2.17
LIMCH1-212ENST00000511424 TRAV10A0A0B4J240 114 aa1.51□□□□□ -2.17
LIMCH1-212ENST00000511424 TINCRA0A1B0GVN0 87 aa1.51□□□□□ -2.17
LIMCH1-212ENST00000511424 C9JAW5 83 aa1.51□□□□□ -2.17
LIMCH1-212ENST00000511424 F8W1H4 67 aa1.51□□□□□ -2.17
LIMCH1-212ENST00000511424 SYS1-DBNDD2H3BUS1 97 aa1.51□□□□□ -2.17
LIMCH1-212ENST00000511424 LEPROTL1O95214 131 aa1.51□□□□□ -2.17
LIMCH1-212ENST00000511424 HBDP02042 147 aa1.51□□□□□ -2.17
LIMCH1-212ENST00000511424 MT-ND6P03923 174 aa1.51□□□□□ -2.17
LIMCH1-212ENST00000511424 RHOHQ15669 191 aa1.51□□□□□ -2.17
LIMCH1-212ENST00000511424 C9orf116Q5BN46 136 aaPredicted RBP1.51□□□□□ -2.17
LIMCH1-212ENST00000511424 TTC32Q5I0X7 151 aa1.51□□□□□ -2.17
LIMCH1-212ENST00000511424 Q5XG85 94 aa1.51□□□□□ -2.17
LIMCH1-212ENST00000511424 SLC25A34Q6PIV7 304 aa1.51□□□□□ -2.17
LIMCH1-212ENST00000511424 C2orf82Q6UX34 121 aa1.51□□□□□ -2.17
LIMCH1-212ENST00000511424 Q8NDZ9 215 aa1.51□□□□□ -2.17
LIMCH1-212ENST00000511424 UBE2WQ96B02 151 aa1.51□□□□□ -2.17
LIMCH1-212ENST00000511424 IFI27L1Q96BM0 104 aa1.51□□□□□ -2.17
LIMCH1-212ENST00000511424 ZNF625Q96I27 306 aaPredicted RBP1.51□□□□□ -2.17
LIMCH1-212ENST00000511424 C20orf78Q9BR46 151 aa1.51□□□□□ -2.17
LIMCH1-212ENST00000511424 NAA38Q9BRA0 125 aaKnown RBP1.51□□□□□ -2.17
LIMCH1-212ENST00000511424 C8orf17Q9NRJ1 99 aa1.51□□□□□ -2.17
LIMCH1-212ENST00000511424 CDC42SE2Q9NRR3 84 aa1.51□□□□□ -2.17
LIMCH1-212ENST00000511424 CDKN2A-AS1Q9UH64 79 aa1.51□□□□□ -2.17
LIMCH1-212ENST00000511424 LINC00959A0A1B0GUT2 108 aa1.5□□□□□ -2.17
LIMCH1-212ENST00000511424 TMEM223A0PJW6 202 aa1.5□□□□□ -2.17
LIMCH1-212ENST00000511424 H3BMG7 143 aa1.5□□□□□ -2.17
LIMCH1-212ENST00000511424 H3BUT2 72 aa1.5□□□□□ -2.17
LIMCH1-212ENST00000511424 PSPHP1O15172 72 aa1.5□□□□□ -2.17
LIMCH1-212ENST00000511424 NDUFS5O43920 106 aa1.5□□□□□ -2.17
LIMCH1-212ENST00000511424 ANGP03950 147 aaKnown RBP1.5□□□□□ -2.17
LIMCH1-212ENST00000511424 COX8AP10176 69 aa1.5□□□□□ -2.17
LIMCH1-212ENST00000511424 FABP2P12104 132 aa1.5□□□□□ -2.17
LIMCH1-212ENST00000511424 ZNF22P17026 224 aaPredicted RBP1.5□□□□□ -2.17
LIMCH1-212ENST00000511424 XCL1P47992 114 aa1.5□□□□□ -2.17
LIMCH1-212ENST00000511424 UBE2D1P51668 147 aa1.5□□□□□ -2.17
LIMCH1-212ENST00000511424 KRTAP10-10P60014 251 aa1.5□□□□□ -2.17
LIMCH1-212ENST00000511424 NPC2P61916 151 aa1.5□□□□□ -2.17
LIMCH1-212ENST00000511424 PMVKQ15126 192 aa1.5□□□□□ -2.17
LIMCH1-212ENST00000511424 LINC01545Q5VT33 79 aa1.5□□□□□ -2.17
LIMCH1-212ENST00000511424 DAND5Q8N907 189 aa1.5□□□□□ -2.17
LIMCH1-212ENST00000511424 MUC7Q8TAX7 377 aa1.5□□□□□ -2.17
LIMCH1-212ENST00000511424 CHCHD1Q96BP2 118 aaKnown RBP1.5□□□□□ -2.17
LIMCH1-212ENST00000511424 AMELXQ99217 191 aa1.5□□□□□ -2.17
LIMCH1-212ENST00000511424 PRADC1Q9BSG0 188 aa1.5□□□□□ -2.17
LIMCH1-212ENST00000511424 SND1-IT1Q9HBX3 110 aa1.5□□□□□ -2.17
LIMCH1-212ENST00000511424 NXT2Q9NPJ8 142 aaKnown RBP1.5□□□□□ -2.17
LIMCH1-212ENST00000511424 RBM12B-AS1Q9P1G2 102 aa1.5□□□□□ -2.17
LIMCH1-212ENST00000511424 ICOSQ9Y6W8 199 aa1.5□□□□□ -2.17
LIMCH1-212ENST00000511424 SRRM2Q9UQ35 2752 aaKnown RBP1.49□□□□□ -2.17
LIMCH1-212ENST00000511424 TRBV25-1A0A075B6N4 114 aa1.49□□□□□ -2.17
LIMCH1-212ENST00000511424 TRBV10-1A0A0K0K1A3 114 aa1.49□□□□□ -2.17
LIMCH1-212ENST00000511424 LOC107984640A0A0U1RRK4 108 aa1.49□□□□□ -2.17
LIMCH1-212ENST00000511424 LY6G6CO95867 125 aa1.49□□□□□ -2.17
LIMCH1-212ENST00000511424 IFITM1P13164 125 aa1.49□□□□□ -2.17
LIMCH1-212ENST00000511424 CD164Q04900 197 aa1.49□□□□□ -2.17
LIMCH1-212ENST00000511424 ETDBQ3ZM63 59 aa1.49□□□□□ -2.17
LIMCH1-212ENST00000511424 MEIG1Q5JSS6 88 aa1.49□□□□□ -2.17
LIMCH1-212ENST00000511424 LELP1Q5T871 98 aa1.49□□□□□ -2.17
LIMCH1-212ENST00000511424 UNQ6190/PRO20217Q6UXQ8 127 aa1.49□□□□□ -2.17
LIMCH1-212ENST00000511424 SOSTDC1Q6X4U4 206 aa1.49□□□□□ -2.17
LIMCH1-212ENST00000511424 Q6ZRN7 208 aaPredicted RBP1.49□□□□□ -2.17
LIMCH1-212ENST00000511424 LINC01600Q96MT4 127 aa1.49□□□□□ -2.17
LIMCH1-212ENST00000511424 PKHD1L1Q86WI1 4243 aa1.49□□□□□ -2.17
LIMCH1-212ENST00000511424 KIAA1109Q2LD37 5005 aa1.49□□□□□ -2.17
LIMCH1-212ENST00000511424 LRP1Q07954 4544 aaKnown RBP1.48□□□□□ -2.17
LIMCH1-212ENST00000511424 TRBV7-7A0A0K0K1E9 115 aa1.48□□□□□ -2.17
LIMCH1-212ENST00000511424 BPY2O14599 106 aa1.48□□□□□ -2.17
LIMCH1-212ENST00000511424 UBE2L6O14933 153 aa1.48□□□□□ -2.17
LIMCH1-212ENST00000511424 APOMO95445 188 aa1.48□□□□□ -2.17
LIMCH1-212ENST00000511424 IGKCP01834 107 aa1.48□□□□□ -2.17
LIMCH1-212ENST00000511424 CRYGAP11844 174 aa1.48□□□□□ -2.17
LIMCH1-212ENST00000511424 TMEM258P61165 79 aa1.48□□□□□ -2.17
LIMCH1-212ENST00000511424 HERVK_113P63121 156 aa1.48□□□□□ -2.17
LIMCH1-212ENST00000511424 C4orf26Q17RF5 130 aa1.48□□□□□ -2.17
LIMCH1-212ENST00000511424 TMEM170BQ5T4T1 132 aa1.48□□□□□ -2.17
LIMCH1-212ENST00000511424 LGALS9CQ6DKI2 356 aa1.48□□□□□ -2.17
LIMCH1-212ENST00000511424 HRCT1Q6UXD1 115 aa1.48□□□□□ -2.17
LIMCH1-212ENST00000511424 TEN1Q86WV5 123 aa1.48□□□□□ -2.17
LIMCH1-212ENST00000511424 C10orf126Q8N4M7 172 aa1.48□□□□□ -2.17
LIMCH1-212ENST00000511424 PPDPFLQ8WWR9 84 aa1.48□□□□□ -2.17
LIMCH1-212ENST00000511424 TMEM141Q96I45 108 aa1.48□□□□□ -2.17
LIMCH1-212ENST00000511424 TOMM7Q9P0U1 55 aa1.48□□□□□ -2.17
LIMCH1-212ENST00000511424 HIGD1BQ9P298 99 aa1.48□□□□□ -2.17
LIMCH1-212ENST00000511424 FAT3Q8TDW7 4589 aa1.48□□□□□ -2.17
LIMCH1-212ENST00000511424 RYR1P21817 5038 aa1.48□□□□□ -2.17
LIMCH1-212ENST00000511424 TRBV20-1A0A075B6N2 111 aa1.47□□□□□ -2.17
LIMCH1-212ENST00000511424 TRAV12-1A0A0B4J245 112 aa1.47□□□□□ -2.17
LIMCH1-212ENST00000511424 NBDYA0A0U1RRE5 68 aa1.47□□□□□ -2.17
LIMCH1-212ENST00000511424 LRCOL1A6NCL2 159 aa1.47□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms