RNA–Protein interactions for RNA: ENST00000491429.1

SCN1A-206, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 542 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-206ENST00000491429 RERGLQ9H628 205 aa-0.61□□□□□ -2.51
SCN1A-206ENST00000491429 MAP3K1Q13233 1512 aa-0.61□□□□□ -2.51
SCN1A-206ENST00000491429 DEPDC5O75140 1603 aa-0.61□□□□□ -2.51
SCN1A-206ENST00000491429 NRAPQ86VF7 1730 aa-0.61□□□□□ -2.51
SCN1A-206ENST00000491429 UBR1Q8IWV7 1749 aa-0.61□□□□□ -2.51
SCN1A-206ENST00000491429 PLEKHH2Q8IVE3 1493 aa-0.61□□□□□ -2.51
SCN1A-206ENST00000491429 PSME4Q14997 1843 aa-0.61□□□□□ -2.51
SCN1A-206ENST00000491429 DIP2CQ9Y2E4 1556 aa-0.62□□□□□ -2.51
SCN1A-206ENST00000491429 RGPD2P0DJD1 1756 aa-0.62□□□□□ -2.51
SCN1A-206ENST00000491429 KDM5DQ9BY66 1539 aa-0.62□□□□□ -2.51
SCN1A-206ENST00000491429 A0A087WVE0 104 aa-0.62□□□□□ -2.51
SCN1A-206ENST00000491429 LOC100130705A0A1B0GUX0 176 aa-0.62□□□□□ -2.51
SCN1A-206ENST00000491429 H3BNG1 76 aa-0.62□□□□□ -2.51
SCN1A-206ENST00000491429 APOC3P02656 99 aa-0.62□□□□□ -2.51
SCN1A-206ENST00000491429 MEIG1Q5JSS6 88 aa-0.62□□□□□ -2.51
SCN1A-206ENST00000491429 DYNLRB1Q9NP97 96 aa-0.62□□□□□ -2.51
SCN1A-206ENST00000491429 PAIP2BQ9ULR5 123 aaKnown RBP-0.62□□□□□ -2.51
SCN1A-206ENST00000491429 S4R3F8 94 aa-0.62□□□□□ -2.51
SCN1A-206ENST00000491429 DOCK2Q92608 1830 aa-0.62□□□□□ -2.51
SCN1A-206ENST00000491429 WDR7Q9Y4E6 1490 aa-0.62□□□□□ -2.51
SCN1A-206ENST00000491429 MYH8P13535 1937 aa-0.62□□□□□ -2.51
SCN1A-206ENST00000491429 SCN7AQ01118 1682 aa-0.62□□□□□ -2.51
SCN1A-206ENST00000491429 IGLC7A0M8Q6 106 aa-0.63□□□□□ -2.51
SCN1A-206ENST00000491429 K7EP13 123 aa-0.63□□□□□ -2.51
SCN1A-206ENST00000491429 GNG7O60262 68 aa-0.63□□□□□ -2.51
SCN1A-206ENST00000491429 TPPP2P59282 170 aa-0.63□□□□□ -2.51
SCN1A-206ENST00000491429 RPS29P62273 56 aaKnown RBP-0.63□□□□□ -2.51
SCN1A-206ENST00000491429 C9orf62Q8N4C0 152 aa-0.63□□□□□ -2.51
SCN1A-206ENST00000491429 ARL11Q969Q4 196 aa-0.63□□□□□ -2.51
SCN1A-206ENST00000491429 MGST2Q99735 147 aa-0.63□□□□□ -2.51
SCN1A-206ENST00000491429 SNRNP25Q9BV90 132 aaKnown RBP-0.63□□□□□ -2.51
SCN1A-206ENST00000491429 ARHGAP35Q9NRY4 1499 aa-0.63□□□□□ -2.51
SCN1A-206ENST00000491429 MLH3Q9UHC1 1453 aa-0.63□□□□□ -2.51
SCN1A-206ENST00000491429 RB1CC1Q8TDY2 1594 aa-0.63□□□□□ -2.51
SCN1A-206ENST00000491429 DCAF1Q9Y4B6 1507 aa-0.64□□□□□ -2.51
SCN1A-206ENST00000491429 KIF21BO75037 1637 aa-0.64□□□□□ -2.51
SCN1A-206ENST00000491429 MON2Q7Z3U7 1717 aa-0.64□□□□□ -2.51
SCN1A-206ENST00000491429 DDX60Q8IY21 1712 aaKnown RBP-0.64□□□□□ -2.51
SCN1A-206ENST00000491429 ERVK-7P63135 1459 aa-0.64□□□□□ -2.51
SCN1A-206ENST00000491429 GAPVD1Q14C86 1478 aa-0.64□□□□□ -2.51
SCN1A-206ENST00000491429 NLRP1Q9C000 1473 aa-0.64□□□□□ -2.51
SCN1A-206ENST00000491429 TRBV7-3A0A075B6L6 115 aa-0.64□□□□□ -2.51
SCN1A-206ENST00000491429 CPSF4LA6NMK7 179 aaKnown RBP-0.64□□□□□ -2.51
SCN1A-206ENST00000491429 MIF4GDA9UHW6 222 aaKnown RBP-0.64□□□□□ -2.51
SCN1A-206ENST00000491429 SELENOWP63302 87 aa-0.64□□□□□ -2.51
SCN1A-206ENST00000491429 HSD52Q0P140 79 aa-0.64□□□□□ -2.51
SCN1A-206ENST00000491429 C10orf113Q5VZT2 155 aa-0.64□□□□□ -2.51
SCN1A-206ENST00000491429 WFDC13Q8IUB5 93 aa-0.64□□□□□ -2.51
SCN1A-206ENST00000491429 WFDC9Q8NEX5 89 aa-0.64□□□□□ -2.51
SCN1A-206ENST00000491429 FDCSPQ8NFU4 85 aa-0.64□□□□□ -2.51
SCN1A-206ENST00000491429 LINC00470Q9BZP3 86 aa-0.64□□□□□ -2.51
SCN1A-206ENST00000491429 NAA60Q9H7X0 242 aa-0.64□□□□□ -2.51
SCN1A-206ENST00000491429 LINC01558Q9Y6Z2 57 aa-0.64□□□□□ -2.51
SCN1A-206ENST00000491429 MADDQ8WXG6 1647 aa-0.64□□□□□ -2.51
SCN1A-206ENST00000491429 NEXMIFQ5QGS0 1516 aa-0.64□□□□□ -2.51
SCN1A-206ENST00000491429 ANKRD36CQ5JPF3 1778 aa-0.65□□□□□ -2.51
SCN1A-206ENST00000491429 SHPRHQ149N8 1683 aa-0.65□□□□□ -2.51
SCN1A-206ENST00000491429 GOLGA4Q13439 2230 aaKnown RBP-0.65□□□□□ -2.51
SCN1A-206ENST00000491429 PLXNC1O60486 1568 aa-0.65□□□□□ -2.51
SCN1A-206ENST00000491429 NDUFA3O95167 84 aa-0.65□□□□□ -2.51
SCN1A-206ENST00000491429 DEFB1P60022 68 aa-0.65□□□□□ -2.51
SCN1A-206ENST00000491429 MYOZ3Q8TDC0 251 aa-0.65□□□□□ -2.51
SCN1A-206ENST00000491429 PPP3R2Q96LZ3 170 aa-0.65□□□□□ -2.51
SCN1A-206ENST00000491429 LINC01600Q96MT4 127 aa-0.65□□□□□ -2.51
SCN1A-206ENST00000491429 CDC42SE2Q9NRR3 84 aa-0.65□□□□□ -2.51
SCN1A-206ENST00000491429 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP-0.65□□□□□ -2.51
SCN1A-206ENST00000491429 FOCADQ5VW36 1801 aa-0.66□□□□□ -2.51
SCN1A-206ENST00000491429 PATJQ8NI35 1801 aa-0.66□□□□□ -2.51
SCN1A-206ENST00000491429 HMGN4O00479 90 aa-0.66□□□□□ -2.52
SCN1A-206ENST00000491429 IGLC1P0CG04 106 aa-0.66□□□□□ -2.52
SCN1A-206ENST00000491429 CCDC58Q4VC31 144 aa-0.66□□□□□ -2.52
SCN1A-206ENST00000491429 DEFB121Q5J5C9 76 aa-0.66□□□□□ -2.52
SCN1A-206ENST00000491429 SFTA2Q6UW10 78 aa-0.66□□□□□ -2.52
SCN1A-206ENST00000491429 ALS2Q96Q42 1657 aa-0.66□□□□□ -2.52
SCN1A-206ENST00000491429 CRYBG1Q9Y4K1 1723 aa-0.67□□□□□ -2.52
SCN1A-206ENST00000491429 NCOA2Q15596 1464 aa-0.67□□□□□ -2.52
SCN1A-206ENST00000491429 ADCY10Q96PN6 1610 aa-0.67□□□□□ -2.52
SCN1A-206ENST00000491429 DEFB4AO15263 64 aa-0.67□□□□□ -2.52
SCN1A-206ENST00000491429 CATR1Q13166 79 aa-0.67□□□□□ -2.52
SCN1A-206ENST00000491429 Q56UQ5 140 aa-0.67□□□□□ -2.52
SCN1A-206ENST00000491429 FAM223AQ8IWN6 122 aa-0.67□□□□□ -2.52
SCN1A-206ENST00000491429 MRPL34Q9BQ48 92 aaKnown RBP-0.67□□□□□ -2.52
SCN1A-206ENST00000491429 CACFD1Q9UGQ2 172 aa-0.67□□□□□ -2.52
SCN1A-206ENST00000491429 DDX60LQ5H9U9 1706 aaKnown RBP-0.67□□□□□ -2.52
SCN1A-206ENST00000491429 ATP10BO94823 1461 aa-0.67□□□□□ -2.52
SCN1A-206ENST00000491429 MYOM2P54296 1465 aa-0.67□□□□□ -2.52
SCN1A-206ENST00000491429 C3P01024 1663 aa-0.68□□□□□ -2.52
SCN1A-206ENST00000491429 IQGAP1P46940 1657 aa-0.68□□□□□ -2.52
SCN1A-206ENST00000491429 OOSP1A8MZH6 123 aa-0.68□□□□□ -2.52
SCN1A-206ENST00000491429 SFT2D2O95562 160 aa-0.68□□□□□ -2.52
SCN1A-206ENST00000491429 DEFB130BP0DP73 79 aa-0.68□□□□□ -2.52
SCN1A-206ENST00000491429 DEFB130AP0DP74 79 aa-0.68□□□□□ -2.52
SCN1A-206ENST00000491429 GLI2P10070 1586 aa-0.68□□□□□ -2.52
SCN1A-206ENST00000491429 CPSF1Q10570 1443 aaKnown RBP-0.68□□□□□ -2.52
SCN1A-206ENST00000491429 DEFB110Q30KQ9 67 aa-0.68□□□□□ -2.52
SCN1A-206ENST00000491429 SPANXDQ9BXN6 97 aa-0.68□□□□□ -2.52
SCN1A-206ENST00000491429 MYO5CQ9NQX4 1742 aa-0.68□□□□□ -2.52
SCN1A-206ENST00000491429 UNC13AQ9UPW8 1703 aa-0.68□□□□□ -2.52
SCN1A-206ENST00000491429 TRPM2O94759 1503 aa-0.69□□□□□ -2.52
SCN1A-206ENST00000491429 DUOX2Q9NRD8 1548 aa-0.69□□□□□ -2.52
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms