RNA–Protein interactions for RNA: ENST00000490135.6

SYNE1-228, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 5,707 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-228ENST00000490135 CAMK2N1Q7Z7J9 78 aa4.85□□□□□ -1.63
SYNE1-228ENST00000490135 BPTFQ12830 3046 aa4.85□□□□□ -1.63
SYNE1-228ENST00000490135 A0A0C4DFX4 3053 aa4.84□□□□□ -1.63
SYNE1-228ENST00000490135 C8orf17Q9NRJ1 99 aa4.84□□□□□ -1.64
SYNE1-228ENST00000490135 LINC01558Q9Y6Z2 57 aa4.84□□□□□ -1.64
SYNE1-228ENST00000490135 SPTBN5Q9NRC6 3674 aaKnown RBP4.83□□□□□ -1.64
SYNE1-228ENST00000490135 NOTCH2Q04721 2471 aa4.83□□□□□ -1.64
SYNE1-228ENST00000490135 CSPG4Q6UVK1 2322 aa4.83□□□□□ -1.64
SYNE1-228ENST00000490135 GVQW2A0A096LPI5 108 aaPredicted RBP4.82□□□□□ -1.64
SYNE1-228ENST00000490135 OTOGLQ3ZCN5 2332 aa4.82□□□□□ -1.64
SYNE1-228ENST00000490135 SPINK7P58062 85 aa4.82□□□□□ -1.64
SYNE1-228ENST00000490135 SPG11Q96JI7 2443 aa4.81□□□□□ -1.64
SYNE1-228ENST00000490135 A0A1B0GVX0 72 aa4.81□□□□□ -1.64
SYNE1-228ENST00000490135 Q8NAQ8 132 aa4.81□□□□□ -1.64
SYNE1-228ENST00000490135 M0R2T5 61 aa4.81□□□□□ -1.64
SYNE1-228ENST00000490135 FAM104AQ969W3 186 aa4.81□□□□□ -1.64
SYNE1-228ENST00000490135 TECTAO75443 2155 aa4.8□□□□□ -1.64
SYNE1-228ENST00000490135 A8MU10 97 aa4.79□□□□□ -1.64
SYNE1-228ENST00000490135 ASB16-AS1Q495Z4 193 aa4.79□□□□□ -1.64
SYNE1-228ENST00000490135 HIVEP3Q5T1R4 2406 aa4.77□□□□□ -1.65
SYNE1-228ENST00000490135 FAM168BA1KXE4 195 aa4.77□□□□□ -1.65
SYNE1-228ENST00000490135 Q6ZSA8 131 aa4.77□□□□□ -1.65
SYNE1-228ENST00000490135 ZNF861PO60384 105 aa4.77□□□□□ -1.65
SYNE1-228ENST00000490135 IGFL1Q6UW32 110 aa4.77□□□□□ -1.65
SYNE1-228ENST00000490135 KCNQ1DNQ9H478 68 aa4.77□□□□□ -1.65
SYNE1-228ENST00000490135 TTC28Q96AY4 2481 aa4.77□□□□□ -1.65
SYNE1-228ENST00000490135 IGLV1-50A0A075B6I6 118 aa4.76□□□□□ -1.65
SYNE1-228ENST00000490135 C10orf142B7Z368 130 aa4.76□□□□□ -1.65
SYNE1-228ENST00000490135 PTPN13Q12923 2485 aa4.76□□□□□ -1.65
SYNE1-228ENST00000490135 MUC6Q6W4X9 2439 aa4.76□□□□□ -1.65
SYNE1-228ENST00000490135 Q8N1X5 172 aa4.76□□□□□ -1.65
SYNE1-228ENST00000490135 ACACBO00763 2458 aa4.76□□□□□ -1.65
SYNE1-228ENST00000490135 ZFHX2Q9C0A1 2572 aaPredicted RBP4.76□□□□□ -1.65
SYNE1-228ENST00000490135 CCDC168Q8NDH2 2452 aa4.76□□□□□ -1.65
SYNE1-228ENST00000490135 TLX1NBP0CAT3 122 aa4.76□□□□□ -1.65
SYNE1-228ENST00000490135 IGLV7-46A0A075B6I9 117 aa4.75□□□□□ -1.65
SYNE1-228ENST00000490135 SMR3BP02814 79 aaPredicted RBP4.75□□□□□ -1.65
SYNE1-228ENST00000490135 DNAH10OSP0CZ25 163 aa4.75□□□□□ -1.65
SYNE1-228ENST00000490135 ANKHD1Q8IWZ3 2542 aaKnown RBP4.74□□□□□ -1.65
SYNE1-228ENST00000490135 KRTAP24-1Q3LI83 254 aa4.74□□□□□ -1.65
SYNE1-228ENST00000490135 KRTAP16-1A8MUX0 517 aa4.74□□□□□ -1.65
SYNE1-228ENST00000490135 HRES1P13985 223 aa4.74□□□□□ -1.65
SYNE1-228ENST00000490135 NAV3Q8IVL0 2385 aa4.73□□□□□ -1.65
SYNE1-228ENST00000490135 CACNA1AO00555 2505 aa4.73□□□□□ -1.65
SYNE1-228ENST00000490135 A0A096LNT2 108 aa4.72□□□□□ -1.65
SYNE1-228ENST00000490135 ABCA2Q9BZC7 2435 aa4.72□□□□□ -1.65
SYNE1-228ENST00000490135 ADM2Q7Z4H4 148 aa4.71□□□□□ -1.66
SYNE1-228ENST00000490135 LINC00528Q8N1L1 170 aa4.71□□□□□ -1.66
SYNE1-228ENST00000490135 C9orf163Q8N9P6 203 aa4.71□□□□□ -1.66
SYNE1-228ENST00000490135 USP34Q70CQ2 3546 aa4.71□□□□□ -1.66
SYNE1-228ENST00000490135 C5orf42Q9H799 3197 aa4.7□□□□□ -1.66
SYNE1-228ENST00000490135 DMDP11532 3685 aa4.7□□□□□ -1.66
SYNE1-228ENST00000490135 IGLV7-43P04211 117 aa4.7□□□□□ -1.66
SYNE1-228ENST00000490135 C15orf56Q8N910 161 aa4.7□□□□□ -1.66
SYNE1-228ENST00000490135 PLA2G2DQ9UNK4 145 aa4.7□□□□□ -1.66
SYNE1-228ENST00000490135 A0A1W2PPR1 153 aa4.69□□□□□ -1.66
SYNE1-228ENST00000490135 COL27A1Q8IZC6 1860 aaPredicted RBP4.69□□□□□ -1.66
SYNE1-228ENST00000490135 Q8N377 158 aa4.69□□□□□ -1.66
SYNE1-228ENST00000490135 MYO18BQ8IUG5 2567 aa4.69□□□□□ -1.66
SYNE1-228ENST00000490135 A0A1B0GU33 70 aa4.68□□□□□ -1.66
SYNE1-228ENST00000490135 A0A1W2PNM2 257 aa4.68□□□□□ -1.66
SYNE1-228ENST00000490135 A0A087WTM6 91 aa4.68□□□□□ -1.66
SYNE1-228ENST00000490135 CUL9Q8IWT3 2517 aa4.68□□□□□ -1.66
SYNE1-228ENST00000490135 NAV2Q8IVL1 2488 aa4.67□□□□□ -1.66
SYNE1-228ENST00000490135 ANAPC11Q9NYG5 84 aa4.67□□□□□ -1.66
SYNE1-228ENST00000490135 WDFY4Q6ZS81 3184 aa4.67□□□□□ -1.66
SYNE1-228ENST00000490135 C2CD3Q4AC94 2353 aa4.67□□□□□ -1.66
SYNE1-228ENST00000490135 ZCCHC13Q8WW36 166 aaKnown RBP4.66□□□□□ -1.66
SYNE1-228ENST00000490135 CHD7Q9P2D1 2997 aa4.66□□□□□ -1.66
SYNE1-228ENST00000490135 DMAC1Q96GE9 116 aa4.66□□□□□ -1.66
SYNE1-228ENST00000490135 LINC00612Q8N6U2 182 aa4.66□□□□□ -1.66
SYNE1-228ENST00000490135 MYO15AQ9UKN7 3530 aa4.65□□□□□ -1.66
SYNE1-228ENST00000490135 TRIOO75962 3097 aa4.65□□□□□ -1.66
SYNE1-228ENST00000490135 DNAH14Q0VDD8 3507 aa4.65□□□□□ -1.66
SYNE1-228ENST00000490135 SPRR4Q96PI1 79 aa4.65□□□□□ -1.67
SYNE1-228ENST00000490135 KLK9Q2XQG4 91 aa4.64□□□□□ -1.67
SYNE1-228ENST00000490135 A0A0G2JQZ4 141 aa4.64□□□□□ -1.67
SYNE1-228ENST00000490135 A0A1W2PNN7 141 aa4.64□□□□□ -1.67
SYNE1-228ENST00000490135 PSORS1C2Q9UIG4 136 aa4.64□□□□□ -1.67
SYNE1-228ENST00000490135 WDFY3Q8IZQ1 3526 aa4.64□□□□□ -1.67
SYNE1-228ENST00000490135 CHD9Q3L8U1 2897 aa4.63□□□□□ -1.67
SYNE1-228ENST00000490135 S4R3F8 94 aa4.63□□□□□ -1.67
SYNE1-228ENST00000490135 PLAC4Q8WY50 150 aa4.62□□□□□ -1.67
SYNE1-228ENST00000490135 F8P00451 2351 aa4.62□□□□□ -1.67
SYNE1-228ENST00000490135 KRTAP25-1Q3LHN0 102 aa4.61□□□□□ -1.67
SYNE1-228ENST00000490135 BDP1A6H8Y1 2624 aa4.6□□□□□ -1.67
SYNE1-228ENST00000490135 LCE6AA0A183 80 aa4.6□□□□□ -1.67
SYNE1-228ENST00000490135 K7EIL1 84 aa4.6□□□□□ -1.67
SYNE1-228ENST00000490135 H1FX-AS1Q4G0G2 97 aa4.6□□□□□ -1.67
SYNE1-228ENST00000490135 CNBPP62633 177 aaKnown RBP4.6□□□□□ -1.67
SYNE1-228ENST00000490135 R4GN34 69 aa4.6□□□□□ -1.67
SYNE1-228ENST00000490135 ROMO1P60602 79 aa4.59□□□□□ -1.67
SYNE1-228ENST00000490135 VPS13AQ96RL7 3174 aa4.59□□□□□ -1.67
SYNE1-228ENST00000490135 MYO9AB2RTY4 2548 aa4.59□□□□□ -1.67
SYNE1-228ENST00000490135 Q6ZR54 194 aa4.59□□□□□ -1.68
SYNE1-228ENST00000490135 TRANK1O15050 2925 aa4.59□□□□□ -1.68
SYNE1-228ENST00000490135 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP4.59□□□□□ -1.68
SYNE1-228ENST00000490135 A0A087X002 238 aa4.58□□□□□ -1.68
SYNE1-228ENST00000490135 PRR34Q9NV39 138 aa4.57□□□□□ -1.68
SYNE1-228ENST00000490135 SPATA8Q6RVD6 105 aa4.57□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms