RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 Q5VSD8 79 aa7.54□□□□□ -1.2
SDC1-206ENST00000482879 KRTAP17-1Q9BYP8 105 aa7.54□□□□□ -1.2
SDC1-206ENST00000482879 BCE1O60756 84 aa7.53□□□□□ -1.2
SDC1-206ENST00000482879 FAT1Q14517 4588 aa7.52□□□□□ -1.21
SDC1-206ENST00000482879 H7C2G1 150 aa7.52□□□□□ -1.21
SDC1-206ENST00000482879 ZNF73O43830 326 aaPredicted RBP7.52□□□□□ -1.21
SDC1-206ENST00000482879 SPRR1AP35321 89 aa7.52□□□□□ -1.21
SDC1-206ENST00000482879 PRO1854Q9UHT4 67 aa7.52□□□□□ -1.21
SDC1-206ENST00000482879 ETDCA0A1B0GVM5 59 aa7.51□□□□□ -1.21
SDC1-206ENST00000482879 A0A1B0GWB2 263 aa7.51□□□□□ -1.21
SDC1-206ENST00000482879 PCP4L1A6NKN8 68 aa7.51□□□□□ -1.21
SDC1-206ENST00000482879 IGLV7-43P04211 117 aa7.51□□□□□ -1.21
SDC1-206ENST00000482879 FAM19A1Q7Z5A9 133 aa7.51□□□□□ -1.21
SDC1-206ENST00000482879 SMIM11BQ8TCY0 68 aa7.51□□□□□ -1.21
SDC1-206ENST00000482879 VPS13BQ7Z7G8 4022 aa7.5□□□□□ -1.21
SDC1-206ENST00000482879 K7ERJ3 54 aa7.5□□□□□ -1.21
SDC1-206ENST00000482879 UBE2AP49459 152 aa7.5□□□□□ -1.21
SDC1-206ENST00000482879 KRTAP10-4P60372 401 aaPredicted RBP7.5□□□□□ -1.21
SDC1-206ENST00000482879 BATFQ16520 125 aa7.5□□□□□ -1.21
SDC1-206ENST00000482879 DIRC1Q969H9 104 aa7.5□□□□□ -1.21
SDC1-206ENST00000482879 KRTAP4-16G5E9R7 235 aaPredicted RBP7.49□□□□□ -1.21
SDC1-206ENST00000482879 C6orf99Q4VX62 202 aa7.49□□□□□ -1.21
SDC1-206ENST00000482879 B5MCH6 92 aa7.48□□□□□ -1.21
SDC1-206ENST00000482879 ZNF861PO60384 105 aa7.48□□□□□ -1.21
SDC1-206ENST00000482879 RPL28P46779 137 aaKnown RBP7.48□□□□□ -1.21
SDC1-206ENST00000482879 PRLHP81277 87 aa7.48□□□□□ -1.21
SDC1-206ENST00000482879 Q1RN00 199 aa7.48□□□□□ -1.21
SDC1-206ENST00000482879 COX7BP24311 80 aa7.47□□□□□ -1.21
SDC1-206ENST00000482879 KRTAP13-1Q8IUC0 172 aa7.47□□□□□ -1.21
SDC1-206ENST00000482879 H0Y9J4 135 aa7.46□□□□□ -1.22
SDC1-206ENST00000482879 VAMP3Q15836 100 aa7.46□□□□□ -1.22
SDC1-206ENST00000482879 TRBV7-6A0A0J9YX20 115 aa7.45□□□□□ -1.22
SDC1-206ENST00000482879 Q6ZRX8 168 aa7.45□□□□□ -1.22
SDC1-206ENST00000482879 SRRM2Q9UQ35 2752 aaKnown RBP7.45□□□□□ -1.22
SDC1-206ENST00000482879 TSPAN13O95857 204 aa7.44□□□□□ -1.22
SDC1-206ENST00000482879 ELOF1P60002 83 aaKnown RBP7.44□□□□□ -1.22
SDC1-206ENST00000482879 SPINK6Q6UWN8 80 aa7.44□□□□□ -1.22
SDC1-206ENST00000482879 HIGD2AQ9BW72 106 aa7.44□□□□□ -1.22
SDC1-206ENST00000482879 KRTAP4-5Q9BYR2 181 aa7.44□□□□□ -1.22
SDC1-206ENST00000482879 PSMB2P49721 201 aa7.43□□□□□ -1.22
SDC1-206ENST00000482879 SNHG12Q9BXW3 62 aa7.43□□□□□ -1.22
SDC1-206ENST00000482879 SMCR5Q8TEV8 140 aa7.42□□□□□ -1.22
SDC1-206ENST00000482879 Q9BRP9 147 aa7.42□□□□□ -1.22
SDC1-206ENST00000482879 TRIAP1O43715 76 aa7.41□□□□□ -1.22
SDC1-206ENST00000482879 INAFM2P0DMQ5 153 aa7.41□□□□□ -1.22
SDC1-206ENST00000482879 DHRS4-AS1Q9P1J3 65 aa7.41□□□□□ -1.22
SDC1-206ENST00000482879 HERC2O95714 4834 aa7.4□□□□□ -1.22
SDC1-206ENST00000482879 H0YGX0 51 aa7.4□□□□□ -1.22
SDC1-206ENST00000482879 ERC2-IT1O76042 136 aa7.4□□□□□ -1.22
SDC1-206ENST00000482879 FLG2Q5D862 2391 aaPredicted RBP7.4□□□□□ -1.23
SDC1-206ENST00000482879 SLC25A20O43772 301 aa7.39□□□□□ -1.23
SDC1-206ENST00000482879 COX6CP09669 75 aa7.39□□□□□ -1.23
SDC1-206ENST00000482879 LINC00575Q6W349 94 aa7.39□□□□□ -1.23
SDC1-206ENST00000482879 SCGB1C2P0DMR2 95 aa7.38□□□□□ -1.23
SDC1-206ENST00000482879 NAA38Q9BRA0 125 aaKnown RBP7.38□□□□□ -1.23
SDC1-206ENST00000482879 hADV29S1A0JD25 119 aa7.37□□□□□ -1.23
SDC1-206ENST00000482879 TAX1BP3O14907 124 aa7.37□□□□□ -1.23
SDC1-206ENST00000482879 COL5A1-AS1Q5SY13 56 aa7.37□□□□□ -1.23
SDC1-206ENST00000482879 ZNF706Q9Y5V0 76 aaPredicted RBP7.36□□□□□ -1.23
SDC1-206ENST00000482879 PKHD1L1Q86WI1 4243 aa7.36□□□□□ -1.23
SDC1-206ENST00000482879 C9orf118A6NHY6 69 aa7.35□□□□□ -1.23
SDC1-206ENST00000482879 H3BUT2 72 aa7.35□□□□□ -1.23
SDC1-206ENST00000482879 SNCGO76070 127 aa7.35□□□□□ -1.23
SDC1-206ENST00000482879 ST20-AS1Q8NBB2 130 aa7.35□□□□□ -1.23
SDC1-206ENST00000482879 CLEC2BQ92478 149 aa7.35□□□□□ -1.23
SDC1-206ENST00000482879 FAM218AQ96MZ4 157 aa7.35□□□□□ -1.23
SDC1-206ENST00000482879 SPRR4Q96PI1 79 aa7.35□□□□□ -1.23
SDC1-206ENST00000482879 GAGE2AQ6NT46 116 aa7.33□□□□□ -1.24
SDC1-206ENST00000482879 ANAPC11Q9NYG5 84 aa7.33□□□□□ -1.24
SDC1-206ENST00000482879 A0A1B0GX51 115 aa7.32□□□□□ -1.24
SDC1-206ENST00000482879 KRTAP1-4P0C5Y4 121 aa7.32□□□□□ -1.24
SDC1-206ENST00000482879 Q6ZQY7 126 aa7.32□□□□□ -1.24
SDC1-206ENST00000482879 DEFB105AQ8NG35 78 aa7.32□□□□□ -1.24
SDC1-206ENST00000482879 LYRM7Q5U5X0 104 aa7.31□□□□□ -1.24
SDC1-206ENST00000482879 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP7.31□□□□□ -1.24
SDC1-206ENST00000482879 TEX49A0A1B0GTD5 131 aa7.29□□□□□ -1.24
SDC1-206ENST00000482879 A0A1W2PPM0 123 aa7.29□□□□□ -1.24
SDC1-206ENST00000482879 LST1O00453 97 aa7.29□□□□□ -1.24
SDC1-206ENST00000482879 LINC00483Q53H64 154 aa7.29□□□□□ -1.24
SDC1-206ENST00000482879 IGLV5-48A0A075B6I7 105 aa7.28□□□□□ -1.24
SDC1-206ENST00000482879 TCL1BO95988 128 aa7.28□□□□□ -1.24
SDC1-206ENST00000482879 DNAL4O96015 105 aa7.28□□□□□ -1.24
SDC1-206ENST00000482879 TRACP01848 142 aa7.28□□□□□ -1.24
SDC1-206ENST00000482879 FABP2P12104 132 aa7.28□□□□□ -1.24
SDC1-206ENST00000482879 SPRR1BP22528 89 aa7.28□□□□□ -1.24
SDC1-206ENST00000482879 LINC01547P58512 204 aaPredicted RBP7.28□□□□□ -1.24
SDC1-206ENST00000482879 ATXN8Q156A1 80 aa7.28□□□□□ -1.24
SDC1-206ENST00000482879 FAM229BQ4G0N7 80 aa7.28□□□□□ -1.24
SDC1-206ENST00000482879 LINC01600Q96MT4 127 aa7.28□□□□□ -1.24
SDC1-206ENST00000482879 TRBV20-1A0A075B6N2 111 aa7.27□□□□□ -1.25
SDC1-206ENST00000482879 CRYGAP11844 174 aa7.27□□□□□ -1.25
SDC1-206ENST00000482879 OCIAD2Q56VL3 154 aa7.27□□□□□ -1.25
SDC1-206ENST00000482879 Q8N377 158 aa7.27□□□□□ -1.25
SDC1-206ENST00000482879 PRR26Q8N8Z3 221 aa7.27□□□□□ -1.25
SDC1-206ENST00000482879 A0A087X002 238 aa7.26□□□□□ -1.25
SDC1-206ENST00000482879 OXTP01178 125 aa7.26□□□□□ -1.25
SDC1-206ENST00000482879 GHRHP01286 108 aa7.25□□□□□ -1.25
SDC1-206ENST00000482879 ORMDL1Q9P0S3 153 aa7.25□□□□□ -1.25
SDC1-206ENST00000482879 LAMTOR3Q9UHA4 124 aa7.25□□□□□ -1.25
SDC1-206ENST00000482879 ABCA13Q86UQ4 5058 aa7.25□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 106.1 ms