RNA–Protein interactions for RNA: ENST00000470268.1

SF3B1-208, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 2,003 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-208ENST00000470268 PPDPFLQ8WWR9 84 aa3.05□□□□□ -1.92
SF3B1-208ENST00000470268 KRTAP2-2Q9BYT5 123 aa3.05□□□□□ -1.92
SF3B1-208ENST00000470268 TMEM126AQ9H061 195 aa3.05□□□□□ -1.92
SF3B1-208ENST00000470268 DNAH5Q8TE73 4624 aa3.04□□□□□ -1.92
SF3B1-208ENST00000470268 A0A1B0GVY2 172 aa3.04□□□□□ -1.92
SF3B1-208ENST00000470268 CCDC179H3BU77 68 aa3.04□□□□□ -1.92
SF3B1-208ENST00000470268 NDUFA1O15239 70 aa3.04□□□□□ -1.92
SF3B1-208ENST00000470268 C4orf26Q17RF5 130 aa3.04□□□□□ -1.92
SF3B1-208ENST00000470268 FAM19A1Q7Z5A9 133 aa3.04□□□□□ -1.92
SF3B1-208ENST00000470268 CARD19Q96LW7 228 aa3.04□□□□□ -1.92
SF3B1-208ENST00000470268 CAMK2N2Q96S95 79 aa3.04□□□□□ -1.92
SF3B1-208ENST00000470268 C6orf48Q9UBA6 75 aa3.04□□□□□ -1.92
SF3B1-208ENST00000470268 CNBPP62633 177 aaKnown RBP3.03□□□□□ -1.92
SF3B1-208ENST00000470268 SYCNQ0VAF6 134 aa3.03□□□□□ -1.92
SF3B1-208ENST00000470268 C2orf48Q96LS8 159 aa3.03□□□□□ -1.92
SF3B1-208ENST00000470268 RPL13AP40429 203 aaKnown RBP3.03□□□□□ -1.92
SF3B1-208ENST00000470268 PSMB2P49721 201 aa3.03□□□□□ -1.92
SF3B1-208ENST00000470268 NDUFV3P56181 108 aaKnown RBP3.03□□□□□ -1.92
SF3B1-208ENST00000470268 C14orf177Q52M58 125 aa3.03□□□□□ -1.92
SF3B1-208ENST00000470268 FAM19A5Q7Z5A7 132 aaPredicted RBP3.03□□□□□ -1.92
SF3B1-208ENST00000470268 C9orf163Q8N9P6 203 aa3.03□□□□□ -1.92
SF3B1-208ENST00000470268 HECTD4Q9Y4D8 3996 aa3.03□□□□□ -1.92
SF3B1-208ENST00000470268 EPPK1P58107 5090 aaKnown RBP3.02□□□□□ -1.93
SF3B1-208ENST00000470268 PKHD1P08F94 4074 aa3.02□□□□□ -1.93
SF3B1-208ENST00000470268 LOC107984156A0A0G2JMH3 177 aa3.02□□□□□ -1.93
SF3B1-208ENST00000470268 PFN2P35080 140 aa3.02□□□□□ -1.93
SF3B1-208ENST00000470268 CXCL5P42830 114 aa3.02□□□□□ -1.93
SF3B1-208ENST00000470268 MEIG1Q5JSS6 88 aa3.02□□□□□ -1.93
SF3B1-208ENST00000470268 SMIM29Q86T20 159 aa3.02□□□□□ -1.93
SF3B1-208ENST00000470268 TEN1Q86WV5 123 aa3.02□□□□□ -1.93
SF3B1-208ENST00000470268 ARL17AQ8IVW1 177 aa3.02□□□□□ -1.93
SF3B1-208ENST00000470268 SPANXCQ9NY87 97 aa3.02□□□□□ -1.93
SF3B1-208ENST00000470268 TRBV20-1A0A075B6N2 111 aa3.02□□□□□ -1.93
SF3B1-208ENST00000470268 TRBV30A0A0K0K1B3 111 aa3.02□□□□□ -1.93
SF3B1-208ENST00000470268 PANO1I0J062 215 aa3.02□□□□□ -1.93
SF3B1-208ENST00000470268 OXTP01178 125 aa3.02□□□□□ -1.93
SF3B1-208ENST00000470268 LCE1EQ5T753 118 aa3.02□□□□□ -1.93
SF3B1-208ENST00000470268 Q6ZRP5 223 aa3.02□□□□□ -1.93
SF3B1-208ENST00000470268 LINC00308Q8TCZ7 52 aa3.02□□□□□ -1.93
SF3B1-208ENST00000470268 SPANXDQ9BXN6 97 aa3.02□□□□□ -1.93
SF3B1-208ENST00000470268 TRAV16A0A0A6YYK6 109 aaPredicted RBP3.01□□□□□ -1.93
SF3B1-208ENST00000470268 IGLV9-49A0A0B4J1Y8 123 aa3.01□□□□□ -1.93
SF3B1-208ENST00000470268 A0A1B0GX51 115 aa3.01□□□□□ -1.93
SF3B1-208ENST00000470268 IFITM1P13164 125 aa3.01□□□□□ -1.93
SF3B1-208ENST00000470268 RPS28P62857 69 aaKnown RBP3.01□□□□□ -1.93
SF3B1-208ENST00000470268 SDIM1Q6ZPB5 146 aa3.01□□□□□ -1.93
SF3B1-208ENST00000470268 MIR7-3HGQ8N6C7 128 aa3.01□□□□□ -1.93
SF3B1-208ENST00000470268 PRO1854Q9UHT4 67 aa3.01□□□□□ -1.93
SF3B1-208ENST00000470268 LRP1BQ9NZR2 4599 aa3.01□□□□□ -1.93
SF3B1-208ENST00000470268 A0A096LNI7 61 aa3□□□□□ -1.93
SF3B1-208ENST00000470268 NDUFC2-KCTD14E9PQ53 114 aa3□□□□□ -1.93
SF3B1-208ENST00000470268 J3KT08 172 aa3□□□□□ -1.93
SF3B1-208ENST00000470268 SNCGO76070 127 aa3□□□□□ -1.93
SF3B1-208ENST00000470268 TCL1BO95988 128 aa3□□□□□ -1.93
SF3B1-208ENST00000470268 TLX1NBP0CAT3 122 aa3□□□□□ -1.93
SF3B1-208ENST00000470268 CHTF8P0CG12 524 aa3□□□□□ -1.93
SF3B1-208ENST00000470268 LINC00158P58513 81 aa3□□□□□ -1.93
SF3B1-208ENST00000470268 KRTAP10-1P60331 282 aa3□□□□□ -1.93
SF3B1-208ENST00000470268 PRR3P79522 188 aaKnown RBP3□□□□□ -1.93
SF3B1-208ENST00000470268 CD164Q04900 197 aa3□□□□□ -1.93
SF3B1-208ENST00000470268 C1orf195Q5TG92 126 aa3□□□□□ -1.93
SF3B1-208ENST00000470268 ANKRD29Q8N6D5 301 aa3□□□□□ -1.93
SF3B1-208ENST00000470268 Q8NDZ9 215 aa3□□□□□ -1.93
SF3B1-208ENST00000470268 DYNC1H1Q14204 4646 aaKnown RBP3□□□□□ -1.93
SF3B1-208ENST00000470268 IGKV2-28A0A075B6P5 120 aa3□□□□□ -1.93
SF3B1-208ENST00000470268 IGKV2D-28P01615 120 aa3□□□□□ -1.93
SF3B1-208ENST00000470268 Q1RN00 199 aa3□□□□□ -1.93
SF3B1-208ENST00000470268 C9orf129Q5T035 196 aaKnown RBP3□□□□□ -1.93
SF3B1-208ENST00000470268 LYRM7Q5U5X0 104 aa3□□□□□ -1.93
SF3B1-208ENST00000470268 Q6Q795 121 aa3□□□□□ -1.93
SF3B1-208ENST00000470268 KRTAP7-1Q8IUC3 87 aa3□□□□□ -1.93
SF3B1-208ENST00000470268 XAGE1AQ9HD64 81 aa3□□□□□ -1.93
SF3B1-208ENST00000470268 A0A0B4J2C4 111 aa2.99□□□□□ -1.93
SF3B1-208ENST00000470268 IGKV2-24A0A0C4DH68 120 aa2.99□□□□□ -1.93
SF3B1-208ENST00000470268 TIMM17BO60830 172 aa2.99□□□□□ -1.93
SF3B1-208ENST00000470268 RPL18AQ02543 176 aaKnown RBP2.99□□□□□ -1.93
SF3B1-208ENST00000470268 COX17Q14061 63 aa2.99□□□□□ -1.93
SF3B1-208ENST00000470268 CLEC2BQ92478 149 aa2.99□□□□□ -1.93
SF3B1-208ENST00000470268 SND1-IT1Q9HBX3 110 aa2.99□□□□□ -1.93
SF3B1-208ENST00000470268 DNAH8Q96JB1 4490 aa2.99□□□□□ -1.93
SF3B1-208ENST00000470268 LOC107984640A0A0U1RRK4 108 aa2.98□□□□□ -1.93
SF3B1-208ENST00000470268 FAM168BA1KXE4 195 aa2.98□□□□□ -1.93
SF3B1-208ENST00000470268 C16orf90A8MZG2 172 aa2.98□□□□□ -1.93
SF3B1-208ENST00000470268 SCGB1C2P0DMR2 95 aa2.98□□□□□ -1.93
SF3B1-208ENST00000470268 CIRBPQ14011 172 aaKnown RBP2.98□□□□□ -1.93
SF3B1-208ENST00000470268 LINC00337Q8N6G1 96 aa2.98□□□□□ -1.93
SF3B1-208ENST00000470268 HMCN1Q96RW7 5635 aa2.98□□□□□ -1.93
SF3B1-208ENST00000470268 A0A1W2PNN7 141 aa2.98□□□□□ -1.93
SF3B1-208ENST00000470268 HAMPP81172 84 aa2.98□□□□□ -1.93
SF3B1-208ENST00000470268 Q6ZSA8 131 aa2.98□□□□□ -1.93
SF3B1-208ENST00000470268 SPACA4Q8TDM5 124 aa2.98□□□□□ -1.93
SF3B1-208ENST00000470268 C9JAW5 83 aa2.97□□□□□ -1.93
SF3B1-208ENST00000470268 PKIGQ9Y2B9 76 aa2.97□□□□□ -1.93
SF3B1-208ENST00000470268 APOBP04114 4563 aaKnown RBP2.97□□□□□ -1.93
SF3B1-208ENST00000470268 SLC25A20O43772 301 aa2.97□□□□□ -1.93
SF3B1-208ENST00000470268 FAM218AQ96MZ4 157 aa2.97□□□□□ -1.93
SF3B1-208ENST00000470268 A0A087WYN8 130 aa2.96□□□□□ -1.94
SF3B1-208ENST00000470268 NCR3O14931 201 aa2.96□□□□□ -1.94
SF3B1-208ENST00000470268 CDK2AP2O75956 126 aa2.96□□□□□ -1.94
SF3B1-208ENST00000470268 CIRBP-AS1Q8TBR5 109 aa2.96□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 66.9 ms