RNA–Protein interactions for RNA: ENST00000461872.6

SYNE1-216, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,075 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-216ENST00000461872 TEX15Q9BXT5 2789 aa4.67□□□□□ -1.66
SYNE1-216ENST00000461872 SERTAD4-AS1Q5TG53 156 aa4.67□□□□□ -1.66
SYNE1-216ENST00000461872 C1orf64Q8NEQ6 169 aa4.67□□□□□ -1.66
SYNE1-216ENST00000461872 MAP1AP78559 2803 aaPredicted RBP4.67□□□□□ -1.66
SYNE1-216ENST00000461872 HECTD1Q9ULT8 2610 aa4.67□□□□□ -1.66
SYNE1-216ENST00000461872 ATP11AUNQ6ZP68 121 aa4.67□□□□□ -1.66
SYNE1-216ENST00000461872 TEP1Q99973 2627 aaKnown RBP4.67□□□□□ -1.66
SYNE1-216ENST00000461872 KRTAP10-9P60411 292 aa4.66□□□□□ -1.66
SYNE1-216ENST00000461872 LINC00476Q8WZB0 136 aa4.66□□□□□ -1.66
SYNE1-216ENST00000461872 M0R2N4 97 aa4.65□□□□□ -1.66
SYNE1-216ENST00000461872 CNBPP62633 177 aaKnown RBP4.65□□□□□ -1.66
SYNE1-216ENST00000461872 C15orf56Q8N910 161 aa4.65□□□□□ -1.67
SYNE1-216ENST00000461872 INAFM1C9JVW0 142 aa4.65□□□□□ -1.67
SYNE1-216ENST00000461872 MGAM2Q2M2H8 2515 aa4.65□□□□□ -1.67
SYNE1-216ENST00000461872 IGLV8-61A0A075B6I0 122 aa4.64□□□□□ -1.67
SYNE1-216ENST00000461872 RETNLBQ9BQ08 111 aa4.64□□□□□ -1.67
SYNE1-216ENST00000461872 MGAQ8IWI9 3026 aa4.64□□□□□ -1.67
SYNE1-216ENST00000461872 TRIOO75962 3097 aa4.64□□□□□ -1.67
SYNE1-216ENST00000461872 LY6G6CO95867 125 aa4.64□□□□□ -1.67
SYNE1-216ENST00000461872 C8orf87E5RJ46 101 aa4.63□□□□□ -1.67
SYNE1-216ENST00000461872 PSPHP1O15172 72 aa4.63□□□□□ -1.67
SYNE1-216ENST00000461872 Q8N377 158 aa4.63□□□□□ -1.67
SYNE1-216ENST00000461872 SPRR1AP35321 89 aa4.63□□□□□ -1.67
SYNE1-216ENST00000461872 LINC00336Q6ZUF6 198 aa4.63□□□□□ -1.67
SYNE1-216ENST00000461872 CIRBP-AS1Q8TBR5 109 aa4.63□□□□□ -1.67
SYNE1-216ENST00000461872 IGHV6-1A0A0B4J1U7 121 aa4.63□□□□□ -1.67
SYNE1-216ENST00000461872 EPM2AB3EWF7 344 aa4.63□□□□□ -1.67
SYNE1-216ENST00000461872 CD164Q04900 197 aa4.63□□□□□ -1.67
SYNE1-216ENST00000461872 ACYP2P14621 99 aa4.62□□□□□ -1.67
SYNE1-216ENST00000461872 Q5XG85 94 aa4.62□□□□□ -1.67
SYNE1-216ENST00000461872 MDFIQ99750 246 aa4.62□□□□□ -1.67
SYNE1-216ENST00000461872 NIPBLQ6KC79 2804 aaeCLIP4.62□□□□□ -1.67
SYNE1-216ENST00000461872 C9orf129Q5T035 196 aaKnown RBP4.61□□□□□ -1.67
SYNE1-216ENST00000461872 NBEAQ8NFP9 2946 aa4.61□□□□□ -1.67
SYNE1-216ENST00000461872 FAM229AH3BQW9 127 aa4.6□□□□□ -1.67
SYNE1-216ENST00000461872 NSD1Q96L73 2696 aaPredicted RBP4.6□□□□□ -1.67
SYNE1-216ENST00000461872 PCOTHQ58A44 107 aa4.6□□□□□ -1.67
SYNE1-216ENST00000461872 K7EQZ3 153 aa4.6□□□□□ -1.67
SYNE1-216ENST00000461872 SPRR1BP22528 89 aa4.59□□□□□ -1.67
SYNE1-216ENST00000461872 NOTCH1P46531 2555 aa4.59□□□□□ -1.67
SYNE1-216ENST00000461872 KRTAP1-3Q8IUG1 177 aa4.59□□□□□ -1.68
SYNE1-216ENST00000461872 PRLHP81277 87 aa4.59□□□□□ -1.68
SYNE1-216ENST00000461872 UTRNP46939 3433 aa4.58□□□□□ -1.68
SYNE1-216ENST00000461872 IGFL1Q6UW32 110 aa4.58□□□□□ -1.68
SYNE1-216ENST00000461872 LAMA2P24043 3122 aaKnown RBP4.58□□□□□ -1.68
SYNE1-216ENST00000461872 A0A1W2PNM2 257 aa4.58□□□□□ -1.68
SYNE1-216ENST00000461872 LCE6AA0A183 80 aa4.57□□□□□ -1.68
SYNE1-216ENST00000461872 NBEAL1Q6ZS30 2694 aa4.57□□□□□ -1.68
SYNE1-216ENST00000461872 ITPR1Q14643 2758 aa4.57□□□□□ -1.68
SYNE1-216ENST00000461872 UTP20O75691 2785 aaKnown RBP4.57□□□□□ -1.68
SYNE1-216ENST00000461872 LINC00588Q9Y4M8 146 aa4.57□□□□□ -1.68
SYNE1-216ENST00000461872 KTN1-AS1Q86SY8 53 aa4.57□□□□□ -1.68
SYNE1-216ENST00000461872 SPINT4Q6UDR6 99 aa4.57□□□□□ -1.68
SYNE1-216ENST00000461872 IGKV2D-30A0A075B6S6 120 aa4.56□□□□□ -1.68
SYNE1-216ENST00000461872 IGKV2-30P06310 120 aa4.56□□□□□ -1.68
SYNE1-216ENST00000461872 Q75L30 129 aa4.56□□□□□ -1.68
SYNE1-216ENST00000461872 CDC42SE1Q9NRR8 79 aa4.55□□□□□ -1.68
SYNE1-216ENST00000461872 KRTAP1-1Q07627 177 aa4.55□□□□□ -1.68
SYNE1-216ENST00000461872 ASB16-AS1Q495Z4 193 aa4.55□□□□□ -1.68
SYNE1-216ENST00000461872 SPAG11AQ6PDA7 123 aa4.55□□□□□ -1.68
SYNE1-216ENST00000461872 TNP2Q05952 138 aa4.55□□□□□ -1.68
SYNE1-216ENST00000461872 COA5Q86WW8 74 aa4.55□□□□□ -1.68
SYNE1-216ENST00000461872 ITPR2Q14571 2701 aa4.55□□□□□ -1.68
SYNE1-216ENST00000461872 COL6A5A8TX70 2615 aa4.55□□□□□ -1.68
SYNE1-216ENST00000461872 DSCR10P59022 87 aa4.54□□□□□ -1.68
SYNE1-216ENST00000461872 SSBP3-AS1Q7Z2R9 100 aa4.54□□□□□ -1.68
SYNE1-216ENST00000461872 STAB1Q9NY15 2570 aa4.54□□□□□ -1.68
SYNE1-216ENST00000461872 IGLV7-46A0A075B6I9 117 aa4.54□□□□□ -1.68
SYNE1-216ENST00000461872 OXLD1Q5BKU9 147 aa4.54□□□□□ -1.68
SYNE1-216ENST00000461872 MRPL34Q9BQ48 92 aaKnown RBP4.54□□□□□ -1.68
SYNE1-216ENST00000461872 CFAP54Q96N23 3096 aa4.54□□□□□ -1.68
SYNE1-216ENST00000461872 FRYQ5TBA9 3013 aa4.54□□□□□ -1.68
SYNE1-216ENST00000461872 VPS13AQ96RL7 3174 aa4.54□□□□□ -1.68
SYNE1-216ENST00000461872 A0A1B0GVX0 72 aa4.54□□□□□ -1.68
SYNE1-216ENST00000461872 FP248Q71RG6 208 aaPredicted RBP4.54□□□□□ -1.68
SYNE1-216ENST00000461872 IGLV5-52A0A0A0MRZ9 124 aa4.54□□□□□ -1.68
SYNE1-216ENST00000461872 C7orf65Q6ZTY9 151 aa4.54□□□□□ -1.68
SYNE1-216ENST00000461872 C9orf163Q8N9P6 203 aa4.53□□□□□ -1.68
SYNE1-216ENST00000461872 HRNRQ86YZ3 2850 aaPredicted RBP4.53□□□□□ -1.68
SYNE1-216ENST00000461872 A0A1B0GU69 56 aa4.52□□□□□ -1.69
SYNE1-216ENST00000461872 NBEAL2Q6ZNJ1 2754 aa4.52□□□□□ -1.69
SYNE1-216ENST00000461872 C8orf17Q9NRJ1 99 aa4.52□□□□□ -1.69
SYNE1-216ENST00000461872 UBR5O95071 2799 aaPredicted RBP4.52□□□□□ -1.69
SYNE1-216ENST00000461872 ZCCHC13Q8WW36 166 aaKnown RBP4.51□□□□□ -1.69
SYNE1-216ENST00000461872 NBDYA0A0U1RRE5 68 aa4.51□□□□□ -1.69
SYNE1-216ENST00000461872 ST20-AS1Q8NBB2 130 aa4.51□□□□□ -1.69
SYNE1-216ENST00000461872 A0A087X002 238 aa4.51□□□□□ -1.69
SYNE1-216ENST00000461872 DEFB116Q30KQ4 102 aa4.5□□□□□ -1.69
SYNE1-216ENST00000461872 KRTAP4-16G5E9R7 235 aaPredicted RBP4.5□□□□□ -1.69
SYNE1-216ENST00000461872 UQCR11O14957 56 aa4.49□□□□□ -1.69
SYNE1-216ENST00000461872 A8MUN3 132 aa4.49□□□□□ -1.69
SYNE1-216ENST00000461872 KRTAP26-1Q6PEX3 210 aa4.49□□□□□ -1.69
SYNE1-216ENST00000461872 CYSTM1Q9H1C7 97 aa4.49□□□□□ -1.69
SYNE1-216ENST00000461872 TACC2O95359 2948 aa4.49□□□□□ -1.69
SYNE1-216ENST00000461872 STAB2Q8WWQ8 2551 aa4.48□□□□□ -1.69
SYNE1-216ENST00000461872 LINC01558Q9Y6Z2 57 aa4.48□□□□□ -1.69
SYNE1-216ENST00000461872 ZNF861PO60384 105 aa4.47□□□□□ -1.69
SYNE1-216ENST00000461872 Q8N9P0 234 aaPredicted RBP4.47□□□□□ -1.69
SYNE1-216ENST00000461872 LINC00472Q9H8W2 130 aa4.47□□□□□ -1.69
SYNE1-216ENST00000461872 ZANQ9Y493 2812 aa4.47□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms