RNA–Protein interactions for RNA: ENST00000461608.1

HDAC6-212, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 397 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-212ENST00000461608 SMIM4Q8WVI0 70 aa0.68□□□□□ -2.3
HDAC6-212ENST00000461608 LINC00472Q9H8W2 130 aa0.68□□□□□ -2.3
HDAC6-212ENST00000461608 PROK2Q9HC23 129 aa0.68□□□□□ -2.3
HDAC6-212ENST00000461608 SMCO4Q9NRQ5 59 aa0.68□□□□□ -2.3
HDAC6-212ENST00000461608 DMXL1Q9Y485 3027 aa0.68□□□□□ -2.3
HDAC6-212ENST00000461608 ZNF292O60281 2723 aa0.68□□□□□ -2.3
HDAC6-212ENST00000461608 DMDP11532 3685 aa0.68□□□□□ -2.3
HDAC6-212ENST00000461608 VPS13AQ96RL7 3174 aa0.67□□□□□ -2.3
HDAC6-212ENST00000461608 G3V318 75 aa0.67□□□□□ -2.3
HDAC6-212ENST00000461608 K7EIL1 84 aa0.67□□□□□ -2.3
HDAC6-212ENST00000461608 PDCD5O14737 125 aa0.67□□□□□ -2.3
HDAC6-212ENST00000461608 HMGN2P05204 90 aaKnown RBP0.67□□□□□ -2.3
HDAC6-212ENST00000461608 SPINK7P58062 85 aa0.67□□□□□ -2.3
HDAC6-212ENST00000461608 Q5BKY6 102 aa0.67□□□□□ -2.3
HDAC6-212ENST00000461608 C6orf201Q7Z4U5 140 aa0.67□□□□□ -2.3
HDAC6-212ENST00000461608 SMIM11BQ8TCY0 68 aa0.67□□□□□ -2.3
HDAC6-212ENST00000461608 CHD6Q8TD26 2715 aa0.67□□□□□ -2.3
HDAC6-212ENST00000461608 KNL1Q8NG31 2342 aa0.67□□□□□ -2.3
HDAC6-212ENST00000461608 SPTA1P02549 2419 aa0.67□□□□□ -2.3
HDAC6-212ENST00000461608 CREBBPQ92793 2442 aa0.67□□□□□ -2.3
HDAC6-212ENST00000461608 C2CD3Q4AC94 2353 aa0.67□□□□□ -2.3
HDAC6-212ENST00000461608 IGF2RP11717 2491 aa0.66□□□□□ -2.3
HDAC6-212ENST00000461608 ASPMQ8IZT6 3477 aa0.66□□□□□ -2.3
HDAC6-212ENST00000461608 MYO18BQ8IUG5 2567 aa0.66□□□□□ -2.3
HDAC6-212ENST00000461608 ZFYVE26Q68DK2 2539 aa0.66□□□□□ -2.3
HDAC6-212ENST00000461608 ZNF462Q96JM2 2506 aa0.66□□□□□ -2.3
HDAC6-212ENST00000461608 FLNBO75369 2602 aaKnown RBP0.66□□□□□ -2.3
HDAC6-212ENST00000461608 MYMXA0A1B0GTQ4 84 aa0.66□□□□□ -2.3
HDAC6-212ENST00000461608 BCE1O60756 84 aa0.66□□□□□ -2.3
HDAC6-212ENST00000461608 CFDP00746 253 aaPredicted RBP0.66□□□□□ -2.3
HDAC6-212ENST00000461608 ACYP1P07311 99 aa0.66□□□□□ -2.3
HDAC6-212ENST00000461608 SPTBP11277 2137 aa0.66□□□□□ -2.3
HDAC6-212ENST00000461608 RPL37P61927 97 aaKnown RBP0.66□□□□□ -2.3
HDAC6-212ENST00000461608 GNGT1P63211 74 aa0.66□□□□□ -2.3
HDAC6-212ENST00000461608 COX17Q14061 63 aa0.66□□□□□ -2.3
HDAC6-212ENST00000461608 SPINK13Q1W4C9 94 aa0.66□□□□□ -2.3
HDAC6-212ENST00000461608 C10orf113Q5VZT2 155 aa0.66□□□□□ -2.3
HDAC6-212ENST00000461608 Q6JHZ5 121 aa0.66□□□□□ -2.3
HDAC6-212ENST00000461608 C18orf32Q8TCD1 76 aa0.66□□□□□ -2.3
HDAC6-212ENST00000461608 SPRR4Q96PI1 79 aa0.66□□□□□ -2.3
HDAC6-212ENST00000461608 ASH1LQ9NR48 2969 aaKnown RBP0.66□□□□□ -2.3
HDAC6-212ENST00000461608 DOPEY1Q5JWR5 2465 aa0.66□□□□□ -2.3
HDAC6-212ENST00000461608 DOCK11Q5JSL3 2073 aa0.66□□□□□ -2.3
HDAC6-212ENST00000461608 SPTBN1Q01082 2364 aaKnown RBP0.65□□□□□ -2.3
HDAC6-212ENST00000461608 PTPN13Q12923 2485 aa0.65□□□□□ -2.3
HDAC6-212ENST00000461608 PCNX1Q96RV3 2341 aa0.65□□□□□ -2.3
HDAC6-212ENST00000461608 A0A0D9SFI3 127 aa0.65□□□□□ -2.31
HDAC6-212ENST00000461608 CEBPZOSA8MTT3 80 aa0.65□□□□□ -2.31
HDAC6-212ENST00000461608 SMIM13P0DJ93 91 aa0.65□□□□□ -2.31
HDAC6-212ENST00000461608 PLGLAQ15195 96 aa0.65□□□□□ -2.31
HDAC6-212ENST00000461608 TMEM263Q8WUH6 116 aaKnown RBP0.65□□□□□ -2.31
HDAC6-212ENST00000461608 LINC01600Q96MT4 127 aa0.65□□□□□ -2.31
HDAC6-212ENST00000461608 NAV3Q8IVL0 2385 aa0.65□□□□□ -2.31
HDAC6-212ENST00000461608 BPTFQ12830 3046 aa0.65□□□□□ -2.31
HDAC6-212ENST00000461608 SPTAN1Q13813 2472 aaKnown RBP0.65□□□□□ -2.31
HDAC6-212ENST00000461608 USP9XQ93008 2570 aaPredicted RBP0.65□□□□□ -2.31
HDAC6-212ENST00000461608 ANKRD11Q6UB99 2663 aaPredicted RBP0.65□□□□□ -2.31
HDAC6-212ENST00000461608 MYO7BQ6PIF6 2116 aa0.65□□□□□ -2.31
HDAC6-212ENST00000461608 HIVEP3Q5T1R4 2406 aa0.65□□□□□ -2.31
HDAC6-212ENST00000461608 SPEGQ15772 3267 aa0.65□□□□□ -2.31
HDAC6-212ENST00000461608 MAST4O15021 2626 aa0.65□□□□□ -2.31
HDAC6-212ENST00000461608 SMG1Q96Q15 3661 aaKnown RBP0.65□□□□□ -2.31
HDAC6-212ENST00000461608 DMXL2Q8TDJ6 3036 aa0.64□□□□□ -2.31
HDAC6-212ENST00000461608 LOC400499M0QZD8 3231 aa0.64□□□□□ -2.31
HDAC6-212ENST00000461608 F8P00451 2351 aa0.64□□□□□ -2.31
HDAC6-212ENST00000461608 NBPF19A0A087WUL8 3843 aa0.64□□□□□ -2.31
HDAC6-212ENST00000461608 AHNAK2Q8IVF2 5795 aa0.64□□□□□ -2.31
HDAC6-212ENST00000461608 FRYQ5TBA9 3013 aa0.64□□□□□ -2.31
HDAC6-212ENST00000461608 WDFY3Q8IZQ1 3526 aa0.64□□□□□ -2.31
HDAC6-212ENST00000461608 H0Y9P7 68 aa0.64□□□□□ -2.31
HDAC6-212ENST00000461608 HMGA1P17096 107 aaKnown RBP0.64□□□□□ -2.31
HDAC6-212ENST00000461608 HMGN3Q15651 99 aa0.64□□□□□ -2.31
HDAC6-212ENST00000461608 SPATA8Q6RVD6 105 aa0.64□□□□□ -2.31
HDAC6-212ENST00000461608 SSBP3-AS1Q7Z2R9 100 aa0.64□□□□□ -2.31
HDAC6-212ENST00000461608 LINC00846Q9NV44 126 aa0.64□□□□□ -2.31
HDAC6-212ENST00000461608 PKDREJQ9NTG1 2253 aa0.64□□□□□ -2.31
HDAC6-212ENST00000461608 NBASA2RRP1 2371 aa0.64□□□□□ -2.31
HDAC6-212ENST00000461608 SETXQ7Z333 2677 aaKnown RBP0.64□□□□□ -2.31
HDAC6-212ENST00000461608 GCN1Q92616 2671 aaKnown RBP0.64□□□□□ -2.31
HDAC6-212ENST00000461608 CELSR3Q9NYQ7 3312 aa0.64□□□□□ -2.31
HDAC6-212ENST00000461608 IGSF10Q6WRI0 2623 aa0.64□□□□□ -2.31
HDAC6-212ENST00000461608 TEP1Q99973 2627 aaKnown RBP0.64□□□□□ -2.31
HDAC6-212ENST00000461608 UNC79Q9P2D8 2635 aa0.64□□□□□ -2.31
HDAC6-212ENST00000461608 CACNA1CQ13936 2221 aa0.64□□□□□ -2.31
HDAC6-212ENST00000461608 LAMA5O15230 3695 aa0.63□□□□□ -2.31
HDAC6-212ENST00000461608 FREM2Q5SZK8 3169 aa0.63□□□□□ -2.31
HDAC6-212ENST00000461608 DNHD1Q96M86 4753 aa0.63□□□□□ -2.31
HDAC6-212ENST00000461608 FRYLO94915 3013 aa0.63□□□□□ -2.31
HDAC6-212ENST00000461608 AKAP13Q12802 2813 aa0.63□□□□□ -2.31
HDAC6-212ENST00000461608 CFAP46Q8IYW2 2715 aa0.63□□□□□ -2.31
HDAC6-212ENST00000461608 BSNQ9UPA5 3926 aa0.63□□□□□ -2.31
HDAC6-212ENST00000461608 SMIM31A0A1B0GVY4 71 aa0.63□□□□□ -2.31
HDAC6-212ENST00000461608 ZZEF1O43149 2961 aa0.63□□□□□ -2.31
HDAC6-212ENST00000461608 S100A3P33764 101 aa0.63□□□□□ -2.31
HDAC6-212ENST00000461608 KRTAP5-10Q6L8G5 202 aa0.63□□□□□ -2.31
HDAC6-212ENST00000461608 PLAC8Q9NZF1 115 aa0.63□□□□□ -2.31
HDAC6-212ENST00000461608 ANKRD36A6QL64 1941 aa0.63□□□□□ -2.31
HDAC6-212ENST00000461608 ABCA12Q86UK0 2595 aa0.63□□□□□ -2.31
HDAC6-212ENST00000461608 CEP295Q9C0D2 2601 aa0.63□□□□□ -2.31
HDAC6-212ENST00000461608 HECTD1Q9ULT8 2610 aa0.63□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms