RNA–Protein interactions for RNA: ENST00000461608.1

HDAC6-212, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 397 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-212ENST00000461608 AEBP2Q6ZN18 517 aaPredicted RBP17.18■□□□□ 0.34
HDAC6-212ENST00000461608 CHIC1Q5VXU3 224 aa16.39■□□□□ 0.21
HDAC6-212ENST00000461608 SENP3Q9H4L4 574 aaPredicted RBP14.98□□□□□ -0.01
HDAC6-212ENST00000461608 PHF23Q9BUL5 403 aaPredicted RBP14.65□□□□□ -0.06
HDAC6-212ENST00000461608 FOXD1Q16676 465 aa13.84□□□□□ -0.19
HDAC6-212ENST00000461608 POTEDQ86YR6 584 aa13.4□□□□□ -0.26
HDAC6-212ENST00000461608 MSH5O43196 834 aa13.31□□□□□ -0.28
HDAC6-212ENST00000461608 PIAS4Q8N2W9 510 aaPredicted RBP13□□□□□ -0.33
HDAC6-212ENST00000461608 PLPPR3Q6T4P5 718 aa12.86□□□□□ -0.35
HDAC6-212ENST00000461608 ADRA2BP18089 450 aa12.61□□□□□ -0.39
HDAC6-212ENST00000461608 PPP6R1Q9UPN7 881 aa12.58□□□□□ -0.4
HDAC6-212ENST00000461608 SCAF1Q9H7N4 1312 aaKnown RBP11.84□□□□□ -0.51
HDAC6-212ENST00000461608 DMRT2Q9Y5R5 561 aa11.73□□□□□ -0.53
HDAC6-212ENST00000461608 MAPK8IP2Q13387 824 aaPredicted RBP11.65□□□□□ -0.54
HDAC6-212ENST00000461608 CACNB1Q02641 598 aaPredicted RBP11.64□□□□□ -0.55
HDAC6-212ENST00000461608 DCAF8L1A6NGE4 600 aa11.48□□□□□ -0.57
HDAC6-212ENST00000461608 RNF39Q9H2S5 420 aa11.17□□□□□ -0.62
HDAC6-212ENST00000461608 PPP4R3CPQ6ZMV5 832 aa11.15□□□□□ -0.62
HDAC6-212ENST00000461608 HOXD11P31277 338 aaPredicted RBP11.14□□□□□ -0.63
HDAC6-212ENST00000461608 C1QBPQ07021 282 aaKnown RBP11.1□□□□□ -0.63
HDAC6-212ENST00000461608 CNKSR2Q8WXI2 1034 aa11.08□□□□□ -0.64
HDAC6-212ENST00000461608 RNF216Q9NWF9 866 aaPredicted RBP11.04□□□□□ -0.64
HDAC6-212ENST00000461608 DNAJC5BQ9UF47 199 aa10.89□□□□□ -0.67
HDAC6-212ENST00000461608 NCBP3Q53F19 620 aaKnown RBP10.8□□□□□ -0.68
HDAC6-212ENST00000461608 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.8□□□□□ -0.683e-8■■□□□ 13
HDAC6-212ENST00000461608 NPM3O75607 178 aaKnown RBP10.51□□□□□ -0.73
HDAC6-212ENST00000461608 POTEHQ6S545 545 aa10.51□□□□□ -0.73
HDAC6-212ENST00000461608 CAPN15O75808 1086 aa10.49□□□□□ -0.73
HDAC6-212ENST00000461608 APLP2Q06481 763 aa10.37□□□□□ -0.75
HDAC6-212ENST00000461608 KCNA4P22459 653 aa10.36□□□□□ -0.75
HDAC6-212ENST00000461608 DSG3P32926 999 aa10.34□□□□□ -0.75
HDAC6-212ENST00000461608 U3KPZ7 1027 aaPredicted RBP10.33□□□□□ -0.76
HDAC6-212ENST00000461608 SPINK5Q9NQ38 1064 aaPredicted RBP10.29□□□□□ -0.76
HDAC6-212ENST00000461608 ZNF219Q9P2Y4 722 aaPredicted RBP10.22□□□□□ -0.77
HDAC6-212ENST00000461608 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.21□□□□□ -0.77
HDAC6-212ENST00000461608 TRHP20396 242 aaPredicted RBP10.21□□□□□ -0.77
HDAC6-212ENST00000461608 HNRNPUL2Q1KMD3 747 aaKnown RBP10.21□□□□□ -0.77
HDAC6-212ENST00000461608 ABCB7O75027 752 aa10.11□□□□□ -0.79
HDAC6-212ENST00000461608 RBM42Q9BTD8 480 aaKnown RBP10.1□□□□□ -0.79
HDAC6-212ENST00000461608 SLC4A2P04920 1241 aa10.08□□□□□ -0.8
HDAC6-212ENST00000461608 SAMD1Q6SPF0 538 aaPredicted RBP10.06□□□□□ -0.8
HDAC6-212ENST00000461608 CHRDL2Q6WN34 429 aa9.88□□□□□ -0.83
HDAC6-212ENST00000461608 POLA2Q14181 598 aa9.79□□□□□ -0.84
HDAC6-212ENST00000461608 MYCNP04198 464 aaPredicted RBP9.76□□□□□ -0.85
HDAC6-212ENST00000461608 ZBTB12Q9Y330 459 aaPredicted RBP9.73□□□□□ -0.85
HDAC6-212ENST00000461608 SLC4A1APQ9BWU0 796 aaKnown RBP9.71□□□□□ -0.86
HDAC6-212ENST00000461608 SP7Q8TDD2 431 aaPredicted RBP9.7□□□□□ -0.86
HDAC6-212ENST00000461608 AKT1S1Q96B36 256 aa9.69□□□□□ -0.86
HDAC6-212ENST00000461608 ZBTB22O15209 634 aa9.59□□□□□ -0.87
HDAC6-212ENST00000461608 HAX1O00165 279 aa9.58□□□□□ -0.88
HDAC6-212ENST00000461608 FOXD4L1Q9NU39 408 aa9.58□□□□□ -0.88
HDAC6-212ENST00000461608 ATF5Q9Y2D1 282 aaPredicted RBP9.58□□□□□ -0.88
HDAC6-212ENST00000461608 REM2Q8IYK8 340 aaPredicted RBP9.53□□□□□ -0.88
HDAC6-212ENST00000461608 PIP4P2Q8N4L2 257 aa9.51□□□□□ -0.89
HDAC6-212ENST00000461608 OSCARQ8IYS5 282 aa9.46□□□□□ -0.9
HDAC6-212ENST00000461608 PITPNM1O00562 1244 aa9.41□□□□□ -0.9
HDAC6-212ENST00000461608 FXR2P51116 673 aaKnown RBP eCLIP9.39□□□□□ -0.91
HDAC6-212ENST00000461608 FBLN2P98095 1184 aa9.34□□□□□ -0.91
HDAC6-212ENST00000461608 SPDYE2BA6NHP3 402 aa9.29□□□□□ -0.92
HDAC6-212ENST00000461608 SPDYE6P0CI01 402 aa9.29□□□□□ -0.92
HDAC6-212ENST00000461608 SPDYE2Q495Y8 402 aa9.29□□□□□ -0.92
HDAC6-212ENST00000461608 CLEC11AQ9Y240 323 aa9.29□□□□□ -0.92
HDAC6-212ENST00000461608 SPDYE1Q8NFV5 336 aaPredicted RBP9.26□□□□□ -0.93
HDAC6-212ENST00000461608 PRKAR2AP13861 404 aaKnown RBP9.24□□□□□ -0.93
HDAC6-212ENST00000461608 ATXN8OSP0DMR3 200 aa9.22□□□□□ -0.93
HDAC6-212ENST00000461608 EVX2Q03828 476 aa9.15□□□□□ -0.94
HDAC6-212ENST00000461608 ZNF692Q9BU19 519 aaPredicted RBP9.15□□□□□ -0.94
HDAC6-212ENST00000461608 MKRN4PQ13434 485 aaPredicted RBP9.12□□□□□ -0.95
HDAC6-212ENST00000461608 EHMT2Q96KQ7 1210 aa9.12□□□□□ -0.95
HDAC6-212ENST00000461608 LHX8Q68G74 356 aa9.11□□□□□ -0.95
HDAC6-212ENST00000461608 CSRNP3Q8WYN3 585 aa9.11□□□□□ -0.95
HDAC6-212ENST00000461608 C19orf67A6NJJ6 358 aa9.1□□□□□ -0.95
HDAC6-212ENST00000461608 GABBR2O75899 941 aa9.08□□□□□ -0.96
HDAC6-212ENST00000461608 PRR29P0C7W0 189 aa9.08□□□□□ -0.96
HDAC6-212ENST00000461608 CLCN6P51797 869 aa9.02□□□□□ -0.97
HDAC6-212ENST00000461608 SSUH2Q9Y2M2 353 aa9□□□□□ -0.97
HDAC6-212ENST00000461608 CHADLQ6NUI6 762 aa8.99□□□□□ -0.97
HDAC6-212ENST00000461608 CD44P16070 742 aaKnown RBP8.95□□□□□ -0.98
HDAC6-212ENST00000461608 PABPN1Q86U42 306 aaKnown RBP eCLIP8.95□□□□□ -0.98
HDAC6-212ENST00000461608 DCBLD2Q96PD2 775 aa8.94□□□□□ -0.98
HDAC6-212ENST00000461608 PLSCR2Q9NRY7 297 aa8.91□□□□□ -0.98
HDAC6-212ENST00000461608 FARP1Q9Y4F1 1045 aaPredicted RBP8.87□□□□□ -0.99
HDAC6-212ENST00000461608 PAK3O75914 559 aaPredicted RBP8.81□□□□□ -1
HDAC6-212ENST00000461608 ZRANB1Q9UGI0 708 aa8.78□□□□□ -1
HDAC6-212ENST00000461608 STAG3Q9UJ98 1225 aa8.77□□□□□ -1.01
HDAC6-212ENST00000461608 POTEIP0CG38 1075 aa8.74□□□□□ -1.01
HDAC6-212ENST00000461608 ZNF579Q8NAF0 562 aaKnown RBP8.73□□□□□ -1.01
HDAC6-212ENST00000461608 NPM1P06748 294 aaKnown RBP eCLIP8.66□□□□□ -1.02
HDAC6-212ENST00000461608 POTEMA6NI47 508 aa8.6□□□□□ -1.03
HDAC6-212ENST00000461608 GALR2O43603 387 aaPredicted RBP8.6□□□□□ -1.03
HDAC6-212ENST00000461608 SPDYE4A6NLX3 237 aa8.59□□□□□ -1.03
HDAC6-212ENST00000461608 PCDH10Q9P2E7 1040 aa8.59□□□□□ -1.03
HDAC6-212ENST00000461608 MAMSTRQ6ZN01 415 aa8.58□□□□□ -1.04
HDAC6-212ENST00000461608 CREBZFQ9NS37 354 aa8.58□□□□□ -1.04
HDAC6-212ENST00000461608 OTUD5Q96G74 571 aa8.57□□□□□ -1.04
HDAC6-212ENST00000461608 POTEGQ6S5H5 508 aa8.55□□□□□ -1.04
HDAC6-212ENST00000461608 SLC39A7Q92504 469 aa8.52□□□□□ -1.05
HDAC6-212ENST00000461608 PHF12Q96QT6 1004 aa8.52□□□□□ -1.05
HDAC6-212ENST00000461608 SCUBE2Q9NQ36 999 aa8.51□□□□□ -1.05
HDAC6-212ENST00000461608 C7P10643 843 aa8.5□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms