RNA–Protein interactions for RNA: ENST00000437564.5

MCF2-205, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MCF2, Length 1,988 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-205ENST00000437564 Q96NJ1 140 aa3.87□□□□□ -1.79
MCF2-205ENST00000437564 C5orf56Q8N8D9 126 aa3.87□□□□□ -1.79
MCF2-205ENST00000437564 ALMS1Q8TCU4 4167 aa3.87□□□□□ -1.79
MCF2-205ENST00000437564 CLPSL2Q6UWE3 100 aa3.85□□□□□ -1.79
MCF2-205ENST00000437564 RPL37AP61513 92 aaKnown RBP3.85□□□□□ -1.79
MCF2-205ENST00000437564 DEFB103AP81534 67 aa3.85□□□□□ -1.79
MCF2-205ENST00000437564 Q6ZRX8 168 aa3.85□□□□□ -1.79
MCF2-205ENST00000437564 SSBP3-AS1Q7Z2R9 100 aa3.85□□□□□ -1.79
MCF2-205ENST00000437564 ANAPC11Q9NYG5 84 aa3.85□□□□□ -1.79
MCF2-205ENST00000437564 NBEAQ8NFP9 2946 aa3.84□□□□□ -1.79
MCF2-205ENST00000437564 DEFB109BQ30KR1 87 aa3.84□□□□□ -1.79
MCF2-205ENST00000437564 CACNA1GO43497 2377 aa3.84□□□□□ -1.79
MCF2-205ENST00000437564 WNK1Q9H4A3 2382 aa3.84□□□□□ -1.79
MCF2-205ENST00000437564 NBDYA0A0U1RRE5 68 aa3.83□□□□□ -1.8
MCF2-205ENST00000437564 LINC01565O15544 149 aa3.83□□□□□ -1.8
MCF2-205ENST00000437564 LY6G6CO95867 125 aa3.83□□□□□ -1.8
MCF2-205ENST00000437564 IGFL1Q6UW32 110 aa3.83□□□□□ -1.8
MCF2-205ENST00000437564 DEFB132Q7Z7B7 95 aa3.83□□□□□ -1.8
MCF2-205ENST00000437564 VPS13AQ96RL7 3174 aa3.82□□□□□ -1.8
MCF2-205ENST00000437564 CFAP54Q96N23 3096 aa3.82□□□□□ -1.8
MCF2-205ENST00000437564 DNAH12Q6ZR08 3092 aa3.81□□□□□ -1.8
MCF2-205ENST00000437564 SZT2Q5T011 3432 aa3.81□□□□□ -1.8
MCF2-205ENST00000437564 KRTAP1-1Q07627 177 aa3.81□□□□□ -1.8
MCF2-205ENST00000437564 RANBP2P49792 3224 aaKnown RBP3.81□□□□□ -1.8
MCF2-205ENST00000437564 FAM186AA6NE01 2351 aa3.8□□□□□ -1.8
MCF2-205ENST00000437564 CHD7Q9P2D1 2997 aa3.8□□□□□ -1.8
MCF2-205ENST00000437564 C4orf3Q8WVX3 66 aa3.8□□□□□ -1.8
MCF2-205ENST00000437564 TNRC18O15417 2968 aaPredicted RBP3.79□□□□□ -1.8
MCF2-205ENST00000437564 SPRR1AP35321 89 aa3.79□□□□□ -1.8
MCF2-205ENST00000437564 CNOT1A5YKK6 2376 aaKnown RBP3.78□□□□□ -1.8
MCF2-205ENST00000437564 C16orf74Q96GX8 76 aa3.78□□□□□ -1.8
MCF2-205ENST00000437564 ZZEF1O43149 2961 aa3.78□□□□□ -1.8
MCF2-205ENST00000437564 A0A1W2PNN7 141 aa3.78□□□□□ -1.8
MCF2-205ENST00000437564 U3KQA8 63 aa3.78□□□□□ -1.8
MCF2-205ENST00000437564 TRIOBPQ9H2D6 2365 aa3.77□□□□□ -1.81
MCF2-205ENST00000437564 XIRP2A4UGR9 3374 aa3.77□□□□□ -1.81
MCF2-205ENST00000437564 MRPL34Q9BQ48 92 aaKnown RBP3.76□□□□□ -1.81
MCF2-205ENST00000437564 PSORS1C2Q9UIG4 136 aa3.76□□□□□ -1.81
MCF2-205ENST00000437564 CACNA1BQ00975 2339 aa3.76□□□□□ -1.81
MCF2-205ENST00000437564 CEP250Q9BV73 2442 aa3.75□□□□□ -1.81
MCF2-205ENST00000437564 A0A1B0GU33 70 aa3.75□□□□□ -1.81
MCF2-205ENST00000437564 DEFB119Q8N690 84 aa3.75□□□□□ -1.81
MCF2-205ENST00000437564 NOP10Q9NPE3 64 aaKnown RBP3.75□□□□□ -1.81
MCF2-205ENST00000437564 A0A0G2JQZ4 141 aa3.74□□□□□ -1.81
MCF2-205ENST00000437564 SPTBN2O15020 2390 aa3.74□□□□□ -1.81
MCF2-205ENST00000437564 H0YAA0 97 aa3.74□□□□□ -1.81
MCF2-205ENST00000437564 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP3.73□□□□□ -1.81
MCF2-205ENST00000437564 H3BUX3 64 aa3.73□□□□□ -1.81
MCF2-205ENST00000437564 UNC80Q8N2C7 3258 aa3.73□□□□□ -1.81
MCF2-205ENST00000437564 FRYLO94915 3013 aa3.73□□□□□ -1.81
MCF2-205ENST00000437564 KRTAP13-3Q3SY46 172 aa3.72□□□□□ -1.81
MCF2-205ENST00000437564 Q8N1X5 172 aa3.72□□□□□ -1.81
MCF2-205ENST00000437564 USP34Q70CQ2 3546 aa3.72□□□□□ -1.81
MCF2-205ENST00000437564 PKDREJQ9NTG1 2253 aa3.71□□□□□ -1.82
MCF2-205ENST00000437564 Q6ZSA8 131 aa3.71□□□□□ -1.82
MCF2-205ENST00000437564 CRIPTQ9P021 101 aa3.71□□□□□ -1.82
MCF2-205ENST00000437564 COL6A6A6NMZ7 2263 aa3.7□□□□□ -1.82
MCF2-205ENST00000437564 TPRP12270 2363 aaKnown RBP3.7□□□□□ -1.82
MCF2-205ENST00000437564 PRUNE2Q8WUY3 3088 aa3.7□□□□□ -1.82
MCF2-205ENST00000437564 LYNX1P0DP58 116 aa3.7□□□□□ -1.82
MCF2-205ENST00000437564 MKI67P46013 3256 aaKnown RBP3.69□□□□□ -1.82
MCF2-205ENST00000437564 TPRXLQ17RH7 258 aa3.69□□□□□ -1.82
MCF2-205ENST00000437564 BRD3OSQ6XYD6 125 aa3.69□□□□□ -1.82
MCF2-205ENST00000437564 CFAP47Q6ZTR5 3102 aa3.69□□□□□ -1.82
MCF2-205ENST00000437564 FRYQ5TBA9 3013 aa3.69□□□□□ -1.82
MCF2-205ENST00000437564 PRO0255Q9UI72 69 aa3.68□□□□□ -1.82
MCF2-205ENST00000437564 IGF2RP11717 2491 aa3.68□□□□□ -1.82
MCF2-205ENST00000437564 APC2O95996 2303 aa3.67□□□□□ -1.82
MCF2-205ENST00000437564 SPRR1BP22528 89 aa3.67□□□□□ -1.82
MCF2-205ENST00000437564 COX6B2Q6YFQ2 88 aa3.67□□□□□ -1.82
MCF2-205ENST00000437564 WDFY4Q6ZS81 3184 aa3.67□□□□□ -1.82
MCF2-205ENST00000437564 MAP1BP46821 2468 aaKnown RBP3.66□□□□□ -1.82
MCF2-205ENST00000437564 KALRNO60229 2985 aa3.66□□□□□ -1.82
MCF2-205ENST00000437564 CACNA1EQ15878 2313 aa3.65□□□□□ -1.82
MCF2-205ENST00000437564 H1FX-AS1Q4G0G2 97 aa3.65□□□□□ -1.83
MCF2-205ENST00000437564 CHD6Q8TD26 2715 aa3.65□□□□□ -1.83
MCF2-205ENST00000437564 PCNX1Q96RV3 2341 aa3.64□□□□□ -1.83
MCF2-205ENST00000437564 KRTAP10-2P60368 255 aa3.64□□□□□ -1.83
MCF2-205ENST00000437564 DEFB136Q30KP8 78 aa3.64□□□□□ -1.83
MCF2-205ENST00000437564 ACACAQ13085 2346 aa3.64□□□□□ -1.83
MCF2-205ENST00000437564 SPTBN5Q9NRC6 3674 aaKnown RBP3.64□□□□□ -1.83
MCF2-205ENST00000437564 KRTAP24-1Q3LI83 254 aa3.63□□□□□ -1.83
MCF2-205ENST00000437564 IGKV2-30P06310 120 aa3.63□□□□□ -1.83
MCF2-205ENST00000437564 LELP1Q5T871 98 aa3.63□□□□□ -1.83
MCF2-205ENST00000437564 DNAH14Q0VDD8 3507 aa3.63□□□□□ -1.83
MCF2-205ENST00000437564 AKAP6Q13023 2319 aa3.62□□□□□ -1.83
MCF2-205ENST00000437564 PRO2289Q9P1D8 64 aa3.62□□□□□ -1.83
MCF2-205ENST00000437564 SPTA1P02549 2419 aa3.62□□□□□ -1.83
MCF2-205ENST00000437564 ZFHX2Q9C0A1 2572 aaPredicted RBP3.62□□□□□ -1.83
MCF2-205ENST00000437564 IGKV2D-30A0A075B6S6 120 aa3.61□□□□□ -1.83
MCF2-205ENST00000437564 LY6EQ16553 131 aa3.6□□□□□ -1.83
MCF2-205ENST00000437564 OTOGQ6ZRI0 2925 aa3.6□□□□□ -1.83
MCF2-205ENST00000437564 RP1L1Q8IWN7 2480 aaPredicted RBP3.6□□□□□ -1.83
MCF2-205ENST00000437564 K7EIL1 84 aa3.6□□□□□ -1.83
MCF2-205ENST00000437564 DEFB130BP0DP73 79 aa3.6□□□□□ -1.83
MCF2-205ENST00000437564 DEFB130AP0DP74 79 aa3.6□□□□□ -1.83
MCF2-205ENST00000437564 ZDBF2Q9HCK1 2354 aa3.59□□□□□ -1.83
MCF2-205ENST00000437564 GIG44P09565 113 aaPredicted RBP3.59□□□□□ -1.83
MCF2-205ENST00000437564 LAMA2P24043 3122 aaKnown RBP3.59□□□□□ -1.84
MCF2-205ENST00000437564 PTPRZ1P23471 2315 aaPredicted RBP3.59□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 67.1 ms