RNA–Protein interactions for RNA: ENST00000430086.1

CCDC88A-206, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-206ENST00000430086 DEFB131BA0A096LNP1 70 aa1.27□□□□□ -2.21
CCDC88A-206ENST00000430086 SPINK6Q6UWN8 80 aa1.27□□□□□ -2.21
CCDC88A-206ENST00000430086 TNRC6CQ9HCJ0 1690 aaKnown RBP1.26□□□□□ -2.21
CCDC88A-206ENST00000430086 NRAPQ86VF7 1730 aa1.26□□□□□ -2.21
CCDC88A-206ENST00000430086 ABCA10Q8WWZ4 1543 aa1.25□□□□□ -2.21
CCDC88A-206ENST00000430086 POLQO75417 2590 aa1.25□□□□□ -2.21
CCDC88A-206ENST00000430086 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP1.25□□□□□ -2.212e-9■■■■□ 21.7
CCDC88A-206ENST00000430086 ETDCA0A1B0GVM5 59 aa1.25□□□□□ -2.21
CCDC88A-206ENST00000430086 DEFB114Q30KQ6 69 aa1.25□□□□□ -2.21
CCDC88A-206ENST00000430086 THOC2Q8NI27 1593 aaKnown RBP1.25□□□□□ -2.21
CCDC88A-206ENST00000430086 MEGF8Q7Z7M0 2845 aa1.25□□□□□ -2.21
CCDC88A-206ENST00000430086 ABCA6Q8N139 1617 aa1.24□□□□□ -2.21
CCDC88A-206ENST00000430086 DDX60LQ5H9U9 1706 aaKnown RBP1.23□□□□□ -2.21
CCDC88A-206ENST00000430086 TNCP24821 2201 aa1.23□□□□□ -2.21
CCDC88A-206ENST00000430086 PLXNC1O60486 1568 aa1.23□□□□□ -2.21
CCDC88A-206ENST00000430086 NDUFA3O95167 84 aa1.23□□□□□ -2.21
CCDC88A-206ENST00000430086 DEFB109BQ30KR1 87 aa1.23□□□□□ -2.21
CCDC88A-206ENST00000430086 H1FX-AS1Q4G0G2 97 aa1.23□□□□□ -2.21
CCDC88A-206ENST00000430086 PRO3102Q9H379 93 aa1.23□□□□□ -2.21
CCDC88A-206ENST00000430086 F8P00451 2351 aa1.23□□□□□ -2.21
CCDC88A-206ENST00000430086 ABCA12Q86UK0 2595 aa1.23□□□□□ -2.21
CCDC88A-206ENST00000430086 CNOT1A5YKK6 2376 aaKnown RBP1.22□□□□□ -2.21
CCDC88A-206ENST00000430086 PRXQ9BXM0 1461 aa1.22□□□□□ -2.21
CCDC88A-206ENST00000430086 ABCC6O95255 1503 aa1.21□□□□□ -2.22
CCDC88A-206ENST00000430086 SERF2P84101 59 aa1.21□□□□□ -2.22
CCDC88A-206ENST00000430086 KRTAP5-10Q6L8G5 202 aa1.21□□□□□ -2.22
CCDC88A-206ENST00000430086 PREX2Q70Z35 1606 aa1.21□□□□□ -2.22
CCDC88A-206ENST00000430086 SPTBN1Q01082 2364 aaKnown RBP1.2□□□□□ -2.22
CCDC88A-206ENST00000430086 ZNF292O60281 2723 aa1.2□□□□□ -2.22
CCDC88A-206ENST00000430086 BDP1A6H8Y1 2624 aa1.19□□□□□ -2.22
CCDC88A-206ENST00000430086 K7EMI3 77 aa1.19□□□□□ -2.22
CCDC88A-206ENST00000430086 FCER1GP30273 86 aa1.19□□□□□ -2.22
CCDC88A-206ENST00000430086 NMES1Q9C002 83 aa1.19□□□□□ -2.22
CCDC88A-206ENST00000430086 ALS2Q96Q42 1657 aa1.19□□□□□ -2.22
CCDC88A-206ENST00000430086 SPINK1P00995 79 aa1.18□□□□□ -2.22
CCDC88A-206ENST00000430086 LINC00158P58513 81 aa1.18□□□□□ -2.22
CCDC88A-206ENST00000430086 KLK9Q2XQG4 91 aa1.18□□□□□ -2.22
CCDC88A-206ENST00000430086 NCBP2-AS2Q69YL0 99 aa1.18□□□□□ -2.22
CCDC88A-206ENST00000430086 WFDC13Q8IUB5 93 aa1.18□□□□□ -2.22
CCDC88A-206ENST00000430086 CPS1P31327 1500 aa1.18□□□□□ -2.22
CCDC88A-206ENST00000430086 MUC16Q8WXI7 14507 aa1.18□□□□□ -2.22
CCDC88A-206ENST00000430086 MAST1Q9Y2H9 1570 aa1.17□□□□□ -2.22
CCDC88A-206ENST00000430086 CHD9Q3L8U1 2897 aa1.16□□□□□ -2.22
CCDC88A-206ENST00000430086 RNF17Q9BXT8 1623 aaKnown RBP1.15□□□□□ -2.22
CCDC88A-206ENST00000430086 PIEZO1Q92508 2521 aa1.15□□□□□ -2.23
CCDC88A-206ENST00000430086 TJP1Q07157 1748 aa1.15□□□□□ -2.23
CCDC88A-206ENST00000430086 C3P01024 1663 aa1.14□□□□□ -2.23
CCDC88A-206ENST00000430086 LELP1Q5T871 98 aa1.14□□□□□ -2.23
CCDC88A-206ENST00000430086 GLI2P10070 1586 aa1.13□□□□□ -2.23
CCDC88A-206ENST00000430086 CRIP1P50238 77 aa1.13□□□□□ -2.23
CCDC88A-206ENST00000430086 KRTAP19-3Q7Z4W3 81 aa1.13□□□□□ -2.23
CCDC88A-206ENST00000430086 CELSR2Q9HCU4 2923 aa1.13□□□□□ -2.23
CCDC88A-206ENST00000430086 DEPDC5O75140 1603 aa1.12□□□□□ -2.23
CCDC88A-206ENST00000430086 PKDREJQ9NTG1 2253 aa1.12□□□□□ -2.23
CCDC88A-206ENST00000430086 TPRP12270 2363 aaKnown RBP1.12□□□□□ -2.23
CCDC88A-206ENST00000430086 GVINP1Q7Z2Y8 2422 aa1.11□□□□□ -2.23
CCDC88A-206ENST00000430086 SYCP2Q9BX26 1530 aa1.1□□□□□ -2.23
CCDC88A-206ENST00000430086 AKAP6Q13023 2319 aa1.1□□□□□ -2.23
CCDC88A-206ENST00000430086 LY75O60449 1722 aa1.1□□□□□ -2.23
CCDC88A-206ENST00000430086 C4AP0C0L4 1744 aa1.1□□□□□ -2.23
CCDC88A-206ENST00000430086 C4BP0C0L5 1744 aa1.1□□□□□ -2.23
CCDC88A-206ENST00000430086 UGGT1Q9NYU2 1555 aa1.1□□□□□ -2.23
CCDC88A-206ENST00000430086 M0R1W7 72 aa1.1□□□□□ -2.23
CCDC88A-206ENST00000430086 APCP25054 2843 aa1.08□□□□□ -2.24
CCDC88A-206ENST00000430086 LYNX1G3V0Z9 82 aa1.08□□□□□ -2.24
CCDC88A-206ENST00000430086 KIAA0586Q9BVV6 1533 aa1.07□□□□□ -2.24
CCDC88A-206ENST00000430086 H0YAA0 97 aa1.07□□□□□ -2.24
CCDC88A-206ENST00000430086 PRH1P02810 166 aa1.07□□□□□ -2.24
CCDC88A-206ENST00000430086 NOTCH1P46531 2555 aa1.07□□□□□ -2.24
CCDC88A-206ENST00000430086 CROCC2H7BZ55 1655 aa1.07□□□□□ -2.24
CCDC88A-206ENST00000430086 KIF1AQ12756 1690 aa1.06□□□□□ -2.24
CCDC88A-206ENST00000430086 SMR3AQ99954 134 aa1.05□□□□□ -2.24
CCDC88A-206ENST00000430086 U3KQA8 63 aa1.05□□□□□ -2.24
CCDC88A-206ENST00000430086 FBN2P35556 2912 aa1.05□□□□□ -2.24
CCDC88A-206ENST00000430086 LOC730098B7Z3J9 87 aa1.04□□□□□ -2.24
CCDC88A-206ENST00000430086 IAPPP10997 89 aa1.04□□□□□ -2.24
CCDC88A-206ENST00000430086 MINOS1Q5TGZ0 78 aa1.04□□□□□ -2.24
CCDC88A-206ENST00000430086 ADCY10Q96PN6 1610 aa1.03□□□□□ -2.24
CCDC88A-206ENST00000430086 IGIPA6NJ69 53 aa1.02□□□□□ -2.25
CCDC88A-206ENST00000430086 KRTAP2-3P0C7H8 128 aa1.02□□□□□ -2.25
CCDC88A-206ENST00000430086 KRTAP2-4Q9BYR9 128 aa1.02□□□□□ -2.25
CCDC88A-206ENST00000430086 KRTAP2-1Q9BYU5 128 aa1.02□□□□□ -2.25
CCDC88A-206ENST00000430086 WNK2Q9Y3S1 2297 aa1.02□□□□□ -2.25
CCDC88A-206ENST00000430086 ITSN2Q9NZM3 1697 aa1.01□□□□□ -2.25
CCDC88A-206ENST00000430086 FANCD2Q9BXW9 1451 aa1.01□□□□□ -2.25
CCDC88A-206ENST00000430086 SNRPGP15A8MWD9 76 aa1.01□□□□□ -2.25
CCDC88A-206ENST00000430086 PLNP26678 52 aa1.01□□□□□ -2.25
CCDC88A-206ENST00000430086 BPTFQ12830 3046 aa1.01□□□□□ -2.25
CCDC88A-206ENST00000430086 ZNF469Q96JG9 3925 aaPredicted RBP0.99□□□□□ -2.25
CCDC88A-206ENST00000430086 H0YGX0 51 aa0.99□□□□□ -2.25
CCDC88A-206ENST00000430086 MROH2AA6NES4 1674 aa0.98□□□□□ -2.25
CCDC88A-206ENST00000430086 DEFB130BP0DP73 79 aa0.98□□□□□ -2.25
CCDC88A-206ENST00000430086 DEFB130AP0DP74 79 aa0.98□□□□□ -2.25
CCDC88A-206ENST00000430086 CMC2Q9NRP2 79 aa0.98□□□□□ -2.25
CCDC88A-206ENST00000430086 TMEM167BQ9NRX6 74 aa0.98□□□□□ -2.25
CCDC88A-206ENST00000430086 TENM4Q6N022 2769 aa0.98□□□□□ -2.25
CCDC88A-206ENST00000430086 FRAS1Q86XX4 4008 aa0.98□□□□□ -2.25
CCDC88A-206ENST00000430086 SPTA1P02549 2419 aa0.97□□□□□ -2.25
CCDC88A-206ENST00000430086 C6orf48Q9UBA6 75 aa0.97□□□□□ -2.25
CCDC88A-206ENST00000430086 TENM3Q9P273 2699 aa0.97□□□□□ -2.25
Retrieved 100 of 20,778 RNA–protein pairs in 60.7 ms