RNA–Protein interactions for RNA: ENST00000427947.7

USP40-204, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 794 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-204ENST00000427947 TRBV30A0A0K0K1B3 111 aa1.3□□□□□ -2.2
USP40-204ENST00000427947 NBDYA0A0U1RRE5 68 aa1.3□□□□□ -2.2
USP40-204ENST00000427947 HCG22E2RYF7 251 aa1.3□□□□□ -2.2
USP40-204ENST00000427947 EFNA4P52798 201 aa1.3□□□□□ -2.2
USP40-204ENST00000427947 CAV3P56539 151 aa1.3□□□□□ -2.2
USP40-204ENST00000427947 S100A10P60903 97 aa1.3□□□□□ -2.2
USP40-204ENST00000427947 C5orf56Q8N8D9 126 aa1.3□□□□□ -2.2
USP40-204ENST00000427947 PPP1R1CQ8WVI7 109 aa1.3□□□□□ -2.2
USP40-204ENST00000427947 CHD3Q12873 2000 aaKnown RBP1.3□□□□□ -2.2
USP40-204ENST00000427947 TRAV30A0A087WSZ9 112 aa1.29□□□□□ -2.2
USP40-204ENST00000427947 S100A8P05109 93 aa1.29□□□□□ -2.2
USP40-204ENST00000427947 GNG11P61952 73 aa1.29□□□□□ -2.2
USP40-204ENST00000427947 SSBP1Q04837 148 aaKnown RBP1.29□□□□□ -2.2
USP40-204ENST00000427947 FAM74A4Q5TZK3 123 aa1.29□□□□□ -2.2
USP40-204ENST00000427947 BET1LQ9NYM9 111 aa1.29□□□□□ -2.2
USP40-204ENST00000427947 LINC00312Q9Y6C7 94 aa1.29□□□□□ -2.2
USP40-204ENST00000427947 U3KQA8 63 aa1.29□□□□□ -2.2
USP40-204ENST00000427947 DNAH6Q9C0G6 4158 aa1.29□□□□□ -2.2
USP40-204ENST00000427947 MUC22E2RYF6 1773 aaPredicted RBP1.29□□□□□ -2.2
USP40-204ENST00000427947 SPTBP11277 2137 aa1.28□□□□□ -2.2
USP40-204ENST00000427947 UQCRHLA0A096LP55 91 aa1.28□□□□□ -2.2
USP40-204ENST00000427947 UQCRHP07919 91 aa1.28□□□□□ -2.2
USP40-204ENST00000427947 SNCAP37840 140 aa1.28□□□□□ -2.2
USP40-204ENST00000427947 UBE2D1P51668 147 aa1.28□□□□□ -2.2
USP40-204ENST00000427947 C5orf38Q86SI9 138 aa1.28□□□□□ -2.2
USP40-204ENST00000427947 C4orf33Q8N1A6 199 aa1.28□□□□□ -2.2
USP40-204ENST00000427947 COX7B2Q8TF08 81 aa1.28□□□□□ -2.2
USP40-204ENST00000427947 IGKV2D-29A0A075B6S2 120 aaPredicted RBP1.27□□□□□ -2.21
USP40-204ENST00000427947 UBE2L5PA0A1B0GUS4 154 aa1.27□□□□□ -2.21
USP40-204ENST00000427947 M0R143 59 aa1.27□□□□□ -2.21
USP40-204ENST00000427947 ANGP03950 147 aaKnown RBP1.27□□□□□ -2.21
USP40-204ENST00000427947 UBE2L3P68036 154 aaKnown RBP1.27□□□□□ -2.21
USP40-204ENST00000427947 CCL8P80075 99 aa1.27□□□□□ -2.21
USP40-204ENST00000427947 NCMAPQ5T1S8 102 aa1.27□□□□□ -2.21
USP40-204ENST00000427947 C10orf128Q5T292 105 aa1.27□□□□□ -2.21
USP40-204ENST00000427947 LINC00575Q6W349 94 aa1.27□□□□□ -2.21
USP40-204ENST00000427947 TTC9CQ8N5M4 171 aa1.27□□□□□ -2.21
USP40-204ENST00000427947 KRTAP4-1Q9BYQ7 146 aa1.27□□□□□ -2.21
USP40-204ENST00000427947 RBAKDNA6NC62 111 aa1.26□□□□□ -2.21
USP40-204ENST00000427947 SSSCA1O60232 199 aa1.26□□□□□ -2.21
USP40-204ENST00000427947 CCL3L1P16619 93 aa1.26□□□□□ -2.21
USP40-204ENST00000427947 ATP5EP56381 51 aaPredicted RBP1.26□□□□□ -2.21
USP40-204ENST00000427947 KLKP1Q107X0 134 aa1.26□□□□□ -2.21
USP40-204ENST00000427947 KRTAP19-6Q3LI70 58 aa1.26□□□□□ -2.21
USP40-204ENST00000427947 ZNF818PQ6ZRF7 136 aa1.26□□□□□ -2.21
USP40-204ENST00000427947 COMMD6Q7Z4G1 85 aa1.26□□□□□ -2.21
USP40-204ENST00000427947 ACBD7Q8N6N7 88 aa1.26□□□□□ -2.21
USP40-204ENST00000427947 MYOZ3Q8TDC0 251 aa1.26□□□□□ -2.21
USP40-204ENST00000427947 DPH3P1Q9H4G8 78 aa1.26□□□□□ -2.21
USP40-204ENST00000427947 V9GYV3 84 aa1.26□□□□□ -2.21
USP40-204ENST00000427947 DNAJC13O75165 2243 aa1.25□□□□□ -2.21
USP40-204ENST00000427947 NCOA6Q14686 2063 aaPredicted RBP1.25□□□□□ -2.21
USP40-204ENST00000427947 TRBV7-1A0A0A6YYK4 115 aa1.25□□□□□ -2.21
USP40-204ENST00000427947 SPTY2D1-AS1A0A0U1RR47 76 aa1.25□□□□□ -2.21
USP40-204ENST00000427947 LOC285095A0A1B0GVY8 99 aa1.25□□□□□ -2.21
USP40-204ENST00000427947 SIX6O95475 246 aa1.25□□□□□ -2.21
USP40-204ENST00000427947 ELOF1P60002 83 aaKnown RBP1.25□□□□□ -2.21
USP40-204ENST00000427947 DCDP81605 110 aaKnown RBP1.25□□□□□ -2.21
USP40-204ENST00000427947 DEFB133Q30KQ1 61 aa1.25□□□□□ -2.21
USP40-204ENST00000427947 NCBP2-AS2Q69YL0 99 aa1.25□□□□□ -2.21
USP40-204ENST00000427947 DEFB106AQ8N104 65 aa1.25□□□□□ -2.21
USP40-204ENST00000427947 TSLPQ969D9 159 aa1.25□□□□□ -2.21
USP40-204ENST00000427947 TMEM14BQ9NUH8 114 aa1.25□□□□□ -2.21
USP40-204ENST00000427947 MYO7BQ6PIF6 2116 aa1.25□□□□□ -2.21
USP40-204ENST00000427947 CACNA1CQ13936 2221 aa1.24□□□□□ -2.21
USP40-204ENST00000427947 PHGR1C9JFL3 82 aa1.24□□□□□ -2.21
USP40-204ENST00000427947 H3BQF6 201 aa1.24□□□□□ -2.21
USP40-204ENST00000427947 ARL14EPLP0DKL9 152 aa1.24□□□□□ -2.21
USP40-204ENST00000427947 EDDM3BP56851 147 aa1.24□□□□□ -2.21
USP40-204ENST00000427947 PKIAP61925 76 aa1.23□□□□□ -2.21
USP40-204ENST00000427947 DEFB109BQ30KR1 87 aa1.23□□□□□ -2.21
USP40-204ENST00000427947 LINC00474Q9P2X8 69 aa1.23□□□□□ -2.21
USP40-204ENST00000427947 AP4S1Q9Y587 144 aa1.23□□□□□ -2.21
USP40-204ENST00000427947 TMEM262E9PQX1 116 aa1.22□□□□□ -2.21
USP40-204ENST00000427947 LY6G6CO95867 125 aa1.22□□□□□ -2.21
USP40-204ENST00000427947 PPP1R17O96001 155 aa1.22□□□□□ -2.21
USP40-204ENST00000427947 IFI6P09912 130 aa1.22□□□□□ -2.21
USP40-204ENST00000427947 COX14Q96I36 57 aa1.22□□□□□ -2.21
USP40-204ENST00000427947 CYP4F30PQ9H0H9 118 aa1.22□□□□□ -2.21
USP40-204ENST00000427947 SCP2D1Q9UJQ7 156 aa1.22□□□□□ -2.21
USP40-204ENST00000427947 ZGRF1Q86YA3 2104 aa1.21□□□□□ -2.22
USP40-204ENST00000427947 DOCK11Q5JSL3 2073 aa1.21□□□□□ -2.22
USP40-204ENST00000427947 CLPSL1A2RUU4 121 aa1.21□□□□□ -2.22
USP40-204ENST00000427947 MPC2O95563 127 aa1.21□□□□□ -2.22
USP40-204ENST00000427947 FDCSPQ8NFU4 85 aa1.21□□□□□ -2.22
USP40-204ENST00000427947 LPAP08519 4548 aa1.2□□□□□ -2.22
USP40-204ENST00000427947 GNGT2O14610 69 aa1.2□□□□□ -2.22
USP40-204ENST00000427947 ACYP2P14621 99 aa1.2□□□□□ -2.22
USP40-204ENST00000427947 SPINT3P49223 89 aa1.2□□□□□ -2.22
USP40-204ENST00000427947 GNGT1P63211 74 aa1.2□□□□□ -2.22
USP40-204ENST00000427947 COL5A1-AS1Q5SY13 56 aa1.2□□□□□ -2.22
USP40-204ENST00000427947 PLAC4Q8WY50 150 aa1.2□□□□□ -2.22
USP40-204ENST00000427947 MANBALQ9NQG1 85 aa1.2□□□□□ -2.22
USP40-204ENST00000427947 ESPL1Q14674 2120 aa1.19□□□□□ -2.22
USP40-204ENST00000427947 USF3Q68DE3 2245 aa1.19□□□□□ -2.22
USP40-204ENST00000427947 TRBV7-3A0A075B6L6 115 aa1.19□□□□□ -2.22
USP40-204ENST00000427947 A0A087WTM6 91 aa1.19□□□□□ -2.22
USP40-204ENST00000427947 NAP1L6A6NFF2 107 aa1.19□□□□□ -2.22
USP40-204ENST00000427947 CRYM-AS1A6NIL9 109 aa1.19□□□□□ -2.22
USP40-204ENST00000427947 F2Z2F3 143 aa1.19□□□□□ -2.22
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms