RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 A0A087WTM6 91 aa3.96□□□□□ -1.78
SCN1A-203ENST00000409050 ASB16-AS1Q495Z4 193 aa3.96□□□□□ -1.78
SCN1A-203ENST00000409050 COL27A1Q8IZC6 1860 aaPredicted RBP3.96□□□□□ -1.78
SCN1A-203ENST00000409050 A0A1W2PNM2 257 aa3.96□□□□□ -1.78
SCN1A-203ENST00000409050 DSCR10P59022 87 aa3.96□□□□□ -1.78
SCN1A-203ENST00000409050 LINC01558Q9Y6Z2 57 aa3.95□□□□□ -1.78
SCN1A-203ENST00000409050 TNP2Q05952 138 aa3.94□□□□□ -1.78
SCN1A-203ENST00000409050 APLNQ9ULZ1 77 aa3.94□□□□□ -1.78
SCN1A-203ENST00000409050 MUC4Q99102 2169 aa3.94□□□□□ -1.78
SCN1A-203ENST00000409050 A0A096LNT2 108 aa3.94□□□□□ -1.78
SCN1A-203ENST00000409050 CHTF8P0CG12 524 aa3.94□□□□□ -1.78
SCN1A-203ENST00000409050 FAM168BA1KXE4 195 aa3.93□□□□□ -1.78
SCN1A-203ENST00000409050 GIG44P09565 113 aaPredicted RBP3.93□□□□□ -1.78
SCN1A-203ENST00000409050 IGLV8-61A0A075B6I0 122 aa3.93□□□□□ -1.78
SCN1A-203ENST00000409050 LINC00483Q53H64 154 aa3.92□□□□□ -1.78
SCN1A-203ENST00000409050 COX6B2Q6YFQ2 88 aa3.92□□□□□ -1.78
SCN1A-203ENST00000409050 J3QL48 77 aa3.91□□□□□ -1.78
SCN1A-203ENST00000409050 SPRR1BP22528 89 aa3.91□□□□□ -1.78
SCN1A-203ENST00000409050 DMAC1Q96GE9 116 aa3.91□□□□□ -1.78
SCN1A-203ENST00000409050 CHD8Q9HCK8 2581 aa3.91□□□□□ -1.78
SCN1A-203ENST00000409050 NCOR2Q9Y618 2525 aa3.91□□□□□ -1.78
SCN1A-203ENST00000409050 PSORS1C2Q9UIG4 136 aa3.91□□□□□ -1.78
SCN1A-203ENST00000409050 K7EIL1 84 aa3.9□□□□□ -1.79
SCN1A-203ENST00000409050 EIF4EBP3O60516 100 aaPredicted RBP3.9□□□□□ -1.79
SCN1A-203ENST00000409050 FN1P02751 2386 aaKnown RBP3.89□□□□□ -1.79
SCN1A-203ENST00000409050 LINC01554Q52M75 96 aa3.89□□□□□ -1.79
SCN1A-203ENST00000409050 JMJD1CQ15652 2540 aa3.89□□□□□ -1.79
SCN1A-203ENST00000409050 A0A1B0GU33 70 aa3.88□□□□□ -1.79
SCN1A-203ENST00000409050 HRES1P13985 223 aa3.88□□□□□ -1.79
SCN1A-203ENST00000409050 SPRR1AP35321 89 aa3.88□□□□□ -1.79
SCN1A-203ENST00000409050 LRRK2Q5S007 2527 aa3.88□□□□□ -1.79
SCN1A-203ENST00000409050 ZFYVE26Q68DK2 2539 aa3.87□□□□□ -1.79
SCN1A-203ENST00000409050 F8P00451 2351 aa3.87□□□□□ -1.79
SCN1A-203ENST00000409050 A0A1W2PNN7 141 aa3.87□□□□□ -1.79
SCN1A-203ENST00000409050 A0A0A0MQY5 61 aa3.86□□□□□ -1.79
SCN1A-203ENST00000409050 KRTAP10-11P60412 298 aa3.86□□□□□ -1.79
SCN1A-203ENST00000409050 Q8N9P0 234 aaPredicted RBP3.85□□□□□ -1.79
SCN1A-203ENST00000409050 TLN1Q9Y490 2541 aaKnown RBP3.85□□□□□ -1.79
SCN1A-203ENST00000409050 ZCCHC13Q8WW36 166 aaKnown RBP3.84□□□□□ -1.79
SCN1A-203ENST00000409050 IGF2RP11717 2491 aa3.84□□□□□ -1.79
SCN1A-203ENST00000409050 MMP24-AS1A0A0U1RRL7 71 aa3.84□□□□□ -1.79
SCN1A-203ENST00000409050 PLAC8Q9NZF1 115 aa3.84□□□□□ -1.79
SCN1A-203ENST00000409050 ABCA12Q86UK0 2595 aa3.83□□□□□ -1.8
SCN1A-203ENST00000409050 BPTFQ12830 3046 aa3.83□□□□□ -1.8
SCN1A-203ENST00000409050 USP9XQ93008 2570 aaPredicted RBP3.83□□□□□ -1.8
SCN1A-203ENST00000409050 TLN2Q9Y4G6 2542 aa3.83□□□□□ -1.8
SCN1A-203ENST00000409050 CSAG1Q6PB30 78 aa3.82□□□□□ -1.8
SCN1A-203ENST00000409050 Q6ZSA8 131 aa3.82□□□□□ -1.8
SCN1A-203ENST00000409050 ZNF462Q96JM2 2506 aa3.82□□□□□ -1.8
SCN1A-203ENST00000409050 PKD1L2Q7Z442 2459 aa3.81□□□□□ -1.8
SCN1A-203ENST00000409050 Q5XG85 94 aa3.81□□□□□ -1.8
SCN1A-203ENST00000409050 C9orf92A6NGG3 77 aa3.8□□□□□ -1.8
SCN1A-203ENST00000409050 PRR26Q8N8Z3 221 aa3.8□□□□□ -1.8
SCN1A-203ENST00000409050 MTORP42345 2549 aa3.8□□□□□ -1.8
SCN1A-203ENST00000409050 LINC00472Q9H8W2 130 aa3.8□□□□□ -1.8
SCN1A-203ENST00000409050 CAMK2N1Q7Z7J9 78 aa3.79□□□□□ -1.8
SCN1A-203ENST00000409050 Q8N1X5 172 aa3.79□□□□□ -1.8
SCN1A-203ENST00000409050 A0A087X002 238 aa3.79□□□□□ -1.8
SCN1A-203ENST00000409050 KRTAP10-3P60369 221 aa3.79□□□□□ -1.8
SCN1A-203ENST00000409050 Q5VV11 94 aa3.78□□□□□ -1.8
SCN1A-203ENST00000409050 PIEZO2Q9H5I5 2752 aa3.78□□□□□ -1.8
SCN1A-203ENST00000409050 USP9YO00507 2555 aaPredicted RBP3.78□□□□□ -1.81
SCN1A-203ENST00000409050 S4R3F8 94 aa3.77□□□□□ -1.81
SCN1A-203ENST00000409050 FP248Q71RG6 208 aaPredicted RBP3.77□□□□□ -1.81
SCN1A-203ENST00000409050 KRTAP1-3Q8IUG1 177 aa3.76□□□□□ -1.81
SCN1A-203ENST00000409050 A0A0D9SG42 100 aa3.76□□□□□ -1.81
SCN1A-203ENST00000409050 Q6ZR54 194 aa3.76□□□□□ -1.81
SCN1A-203ENST00000409050 Q5W150 140 aa3.76□□□□□ -1.81
SCN1A-203ENST00000409050 RPL37P61927 97 aaKnown RBP3.76□□□□□ -1.81
SCN1A-203ENST00000409050 KRTAP1-1Q07627 177 aa3.75□□□□□ -1.81
SCN1A-203ENST00000409050 SEC61BP60468 96 aaKnown RBP3.75□□□□□ -1.81
SCN1A-203ENST00000409050 ROMO1P60602 79 aa3.75□□□□□ -1.81
SCN1A-203ENST00000409050 CASC10Q5T4H9 136 aa3.74□□□□□ -1.81
SCN1A-203ENST00000409050 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP3.74□□□□□ -1.81
SCN1A-203ENST00000409050 RPS29P62273 56 aaKnown RBP3.74□□□□□ -1.81
SCN1A-203ENST00000409050 A0A0G2JQZ4 141 aa3.73□□□□□ -1.81
SCN1A-203ENST00000409050 FASNP49327 2511 aaKnown RBP3.73□□□□□ -1.81
SCN1A-203ENST00000409050 ANAPC11Q9NYG5 84 aa3.72□□□□□ -1.81
SCN1A-203ENST00000409050 SETD2Q9BYW2 2564 aaPredicted RBP3.71□□□□□ -1.82
SCN1A-203ENST00000409050 A0A0C4DFX4 3053 aa3.71□□□□□ -1.82
SCN1A-203ENST00000409050 H1FX-AS1Q4G0G2 97 aa3.7□□□□□ -1.82
SCN1A-203ENST00000409050 SPINK7P58062 85 aa3.69□□□□□ -1.82
SCN1A-203ENST00000409050 KRTAP26-1Q6PEX3 210 aa3.69□□□□□ -1.82
SCN1A-203ENST00000409050 R4GN34 69 aa3.69□□□□□ -1.82
SCN1A-203ENST00000409050 SPATA8Q6RVD6 105 aa3.69□□□□□ -1.82
SCN1A-203ENST00000409050 KRTAP29-1A8MX34 341 aaPredicted RBP3.68□□□□□ -1.82
SCN1A-203ENST00000409050 SMR3BP02814 79 aaPredicted RBP3.68□□□□□ -1.82
SCN1A-203ENST00000409050 OXTP01178 125 aa3.67□□□□□ -1.82
SCN1A-203ENST00000409050 CEP295Q9C0D2 2601 aa3.67□□□□□ -1.82
SCN1A-203ENST00000409050 H3BS24 57 aa3.66□□□□□ -1.82
SCN1A-203ENST00000409050 LCE6AA0A183 80 aa3.66□□□□□ -1.82
SCN1A-203ENST00000409050 KRTAP4-16G5E9R7 235 aaPredicted RBP3.66□□□□□ -1.82
SCN1A-203ENST00000409050 ANKRD11Q6UB99 2663 aaPredicted RBP3.65□□□□□ -1.82
SCN1A-203ENST00000409050 ACANP16112 2415 aa3.64□□□□□ -1.83
SCN1A-203ENST00000409050 Q8NDZ9 215 aa3.63□□□□□ -1.83
SCN1A-203ENST00000409050 M0QZ58 72 aa3.63□□□□□ -1.83
SCN1A-203ENST00000409050 SPTBN4Q9H254 2564 aa3.63□□□□□ -1.83
SCN1A-203ENST00000409050 CR1P17927 2039 aa3.62□□□□□ -1.83
SCN1A-203ENST00000409050 PRAC1Q96KF2 57 aa3.62□□□□□ -1.83
SCN1A-203ENST00000409050 ANKRD17O75179 2603 aaKnown RBP3.62□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 94.3 ms