RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 C1orf137Q5JT78 98 aa11.19□□□□□ -0.62
SDC1-203ENST00000403076 DIRC1Q969H9 104 aa11.19□□□□□ -0.62
SDC1-203ENST00000403076 ETDCA0A1B0GVM5 59 aa11.19□□□□□ -0.62
SDC1-203ENST00000403076 C6orf99Q4VX62 202 aa11.18□□□□□ -0.62
SDC1-203ENST00000403076 TSPAN13O95857 204 aa11.17□□□□□ -0.62
SDC1-203ENST00000403076 RPL28P46779 137 aaKnown RBP11.17□□□□□ -0.62
SDC1-203ENST00000403076 PSMB2P49721 201 aa11.17□□□□□ -0.62
SDC1-203ENST00000403076 FAM19A1Q7Z5A9 133 aa11.17□□□□□ -0.62
SDC1-203ENST00000403076 RPL37AP61513 92 aaKnown RBP11.16□□□□□ -0.62
SDC1-203ENST00000403076 COL5A1-AS1Q5SY13 56 aa11.16□□□□□ -0.62
SDC1-203ENST00000403076 BCE1O60756 84 aa11.15□□□□□ -0.62
SDC1-203ENST00000403076 SPRR1AP35321 89 aa11.15□□□□□ -0.62
SDC1-203ENST00000403076 VAMP3Q15836 100 aa11.15□□□□□ -0.62
SDC1-203ENST00000403076 UBE2AP49459 152 aa11.14□□□□□ -0.63
SDC1-203ENST00000403076 FAM229AH3BQW9 127 aa11.14□□□□□ -0.63
SDC1-203ENST00000403076 COX7BP24311 80 aa11.14□□□□□ -0.63
SDC1-203ENST00000403076 APOBP04114 4563 aaKnown RBP11.13□□□□□ -0.63
SDC1-203ENST00000403076 KRTAP4-16G5E9R7 235 aaPredicted RBP11.12□□□□□ -0.63
SDC1-203ENST00000403076 PRLHP81277 87 aa11.12□□□□□ -0.63
SDC1-203ENST00000403076 NAA38Q9BRA0 125 aaKnown RBP11.12□□□□□ -0.63
SDC1-203ENST00000403076 B5MCH6 92 aa11.11□□□□□ -0.63
SDC1-203ENST00000403076 TRIAP1O43715 76 aa11.11□□□□□ -0.63
SDC1-203ENST00000403076 COX6CP09669 75 aa11.11□□□□□ -0.63
SDC1-203ENST00000403076 TRBV7-6A0A0J9YX20 115 aa11.1□□□□□ -0.63
SDC1-203ENST00000403076 TAX1BP3O14907 124 aa11.1□□□□□ -0.63
SDC1-203ENST00000403076 IGLV7-43P04211 117 aa11.1□□□□□ -0.63
SDC1-203ENST00000403076 SCGB1C2P0DMR2 95 aa11.1□□□□□ -0.63
SDC1-203ENST00000403076 ELOF1P60002 83 aaKnown RBP11.09□□□□□ -0.63
SDC1-203ENST00000403076 H3BUT2 72 aa11.09□□□□□ -0.63
SDC1-203ENST00000403076 PLA2G1BP04054 148 aaKnown RBP11.09□□□□□ -0.63
SDC1-203ENST00000403076 Q6ZRX8 168 aa11.09□□□□□ -0.63
SDC1-203ENST00000403076 C9orf118A6NHY6 69 aa11.08□□□□□ -0.64
SDC1-203ENST00000403076 H0YGX0 51 aa11.08□□□□□ -0.64
SDC1-203ENST00000403076 HIGD2AQ9BW72 106 aa11.07□□□□□ -0.64
SDC1-203ENST00000403076 ZNF861PO60384 105 aa11.06□□□□□ -0.64
SDC1-203ENST00000403076 Q5VSD8 79 aa11.06□□□□□ -0.64
SDC1-203ENST00000403076 H0Y9J4 135 aa11.05□□□□□ -0.64
SDC1-203ENST00000403076 SLC25A20O43772 301 aa11.04□□□□□ -0.64
SDC1-203ENST00000403076 Q8N1X5 172 aa11.04□□□□□ -0.64
SDC1-203ENST00000403076 DHRS4-AS1Q9P1J3 65 aa11.04□□□□□ -0.64
SDC1-203ENST00000403076 KRTAP13-1Q8IUC0 172 aa11.04□□□□□ -0.64
SDC1-203ENST00000403076 RYR1P21817 5038 aa11.03□□□□□ -0.64
SDC1-203ENST00000403076 SNCGO76070 127 aa11.03□□□□□ -0.64
SDC1-203ENST00000403076 INAFM2P0DMQ5 153 aa11.03□□□□□ -0.64
SDC1-203ENST00000403076 LYRM7Q5U5X0 104 aa11.03□□□□□ -0.64
SDC1-203ENST00000403076 LINC00575Q6W349 94 aa11.03□□□□□ -0.64
SDC1-203ENST00000403076 CLEC2BQ92478 149 aa11.03□□□□□ -0.64
SDC1-203ENST00000403076 Q9BRP9 147 aa11.03□□□□□ -0.64
SDC1-203ENST00000403076 SMCR5Q8TEV8 140 aa11.02□□□□□ -0.65
SDC1-203ENST00000403076 KIAA1109Q2LD37 5005 aa11.02□□□□□ -0.65
SDC1-203ENST00000403076 hADV29S1A0JD25 119 aa11□□□□□ -0.65
SDC1-203ENST00000403076 A0A1W2PPM0 123 aa10.99□□□□□ -0.65
SDC1-203ENST00000403076 FABP2P12104 132 aa10.99□□□□□ -0.65
SDC1-203ENST00000403076 KRTAP10-4P60372 401 aaPredicted RBP10.99□□□□□ -0.65
SDC1-203ENST00000403076 FAM218AQ96MZ4 157 aa10.99□□□□□ -0.65
SDC1-203ENST00000403076 ERC2-IT1O76042 136 aa10.98□□□□□ -0.65
SDC1-203ENST00000403076 A0A1B0GV90 55 aa10.97□□□□□ -0.65
SDC1-203ENST00000403076 KRTAP17-1Q9BYP8 105 aa10.97□□□□□ -0.65
SDC1-203ENST00000403076 SPINK6Q6UWN8 80 aa10.96□□□□□ -0.65
SDC1-203ENST00000403076 HSPG2P98160 4391 aa10.96□□□□□ -0.66
SDC1-203ENST00000403076 A0A1B0GX51 115 aa10.95□□□□□ -0.66
SDC1-203ENST00000403076 TCL1BO95988 128 aa10.95□□□□□ -0.66
SDC1-203ENST00000403076 TRBV20-1A0A075B6N2 111 aa10.94□□□□□ -0.66
SDC1-203ENST00000403076 LST1O00453 97 aa10.94□□□□□ -0.66
SDC1-203ENST00000403076 ATXN8Q156A1 80 aa10.94□□□□□ -0.66
SDC1-203ENST00000403076 FAT1Q14517 4588 aa10.94□□□□□ -0.66
SDC1-203ENST00000403076 DNAL4O96015 105 aa10.94□□□□□ -0.66
SDC1-203ENST00000403076 Q6ZQY7 126 aa10.93□□□□□ -0.66
SDC1-203ENST00000403076 ST20-AS1Q8NBB2 130 aa10.93□□□□□ -0.66
SDC1-203ENST00000403076 ZNF706Q9Y5V0 76 aaPredicted RBP10.93□□□□□ -0.66
SDC1-203ENST00000403076 DEFB105AQ8NG35 78 aa10.92□□□□□ -0.66
SDC1-203ENST00000403076 SPCS1Q9Y6A9 102 aa10.92□□□□□ -0.66
SDC1-203ENST00000403076 VPS13BQ7Z7G8 4022 aa10.91□□□□□ -0.66
SDC1-203ENST00000403076 TRACP01848 142 aa10.91□□□□□ -0.66
SDC1-203ENST00000403076 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP10.91□□□□□ -0.66
SDC1-203ENST00000403076 GAGE2AQ6NT46 116 aa10.9□□□□□ -0.66
SDC1-203ENST00000403076 SPRR4Q96PI1 79 aa10.89□□□□□ -0.67
SDC1-203ENST00000403076 OCIAD2Q56VL3 154 aa10.87□□□□□ -0.67
SDC1-203ENST00000403076 ORMDL1Q9P0S3 153 aa10.86□□□□□ -0.67
SDC1-203ENST00000403076 HERC2O95714 4834 aa10.86□□□□□ -0.67
SDC1-203ENST00000403076 SRRM2Q9UQ35 2752 aaKnown RBP10.86□□□□□ -0.67
SDC1-203ENST00000403076 TEX49A0A1B0GTD5 131 aa10.85□□□□□ -0.67
SDC1-203ENST00000403076 GHRHP01286 108 aa10.85□□□□□ -0.67
SDC1-203ENST00000403076 H3BMG7 143 aa10.84□□□□□ -0.67
SDC1-203ENST00000403076 K7EP34 96 aa10.84□□□□□ -0.67
SDC1-203ENST00000403076 GTF2H5Q6ZYL4 71 aa10.84□□□□□ -0.67
SDC1-203ENST00000403076 ANAPC11Q9NYG5 84 aa10.84□□□□□ -0.67
SDC1-203ENST00000403076 IGLV5-48A0A075B6I7 105 aa10.83□□□□□ -0.68
SDC1-203ENST00000403076 LINC01547P58512 204 aaPredicted RBP10.83□□□□□ -0.68
SDC1-203ENST00000403076 KRTAP4-5Q9BYR2 181 aa10.83□□□□□ -0.68
SDC1-203ENST00000403076 C9JAW5 83 aa10.82□□□□□ -0.68
SDC1-203ENST00000403076 Q8N377 158 aa10.82□□□□□ -0.68
SDC1-203ENST00000403076 H3BQ85 93 aa10.8□□□□□ -0.68
SDC1-203ENST00000403076 BAALC-AS2P0C853 105 aa10.8□□□□□ -0.68
SDC1-203ENST00000403076 SPRR1BP22528 89 aa10.8□□□□□ -0.68
SDC1-203ENST00000403076 LINC00483Q53H64 154 aa10.8□□□□□ -0.68
SDC1-203ENST00000403076 KRTAP1-4P0C5Y4 121 aa10.79□□□□□ -0.68
SDC1-203ENST00000403076 PPDPFLQ8WWR9 84 aa10.79□□□□□ -0.68
SDC1-203ENST00000403076 LAMTOR3Q9UHA4 124 aa10.79□□□□□ -0.68
SDC1-203ENST00000403076 TMEM256-PLSCR3K7ERE1 68 aa10.78□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms